Alteration and resilience of the soil microbial community following compost amendment: effects of compost level and compost-borne microbial community

Compost amendment has been reported to impact soil microbial activities or community composition. However, little information is available on (i) to what extent compost amendment concurrently affects the activity, size and composition of soil microbial community, (ii) the relative effect of the addition of a material rich in organic matter versus addition of compost-borne microorganisms in explaining the effects of amendment and (iii) the resilience of community characteristics. We compared five treatments in microcosms: (i) control soil (S), (ii) soil + low level of compost (Sc), (iii) soil + high level of compost (SC), (iv) sterilized soil + high level of compost [(S)C] and (v) soil + high level of sterilized compost [S(C)]. The actual C mineralization rate, substrate-induced respiration, size of microbial community (biomass and heterotrophic cells number), and structure of total microbial (phospholipid fatty acids) and bacterial (automated ribosomal intergenic spacer analysis, A-RISA) communities were surveyed during 6 months after amendment. Our results show that (i) compost amendment affected the activity, size and composition of the soil microbial community, (ii) the effect of compost amendment was mainly due to the physicochemical characteristics of compost matrix rather than to compost-borne microorganisms and (iii) no resilience of microbial characteristics was observed 6-12 months after amendment with a high amount of compost.     

‘Alperujo’ compost amendment of contaminated calcareous and acidic soils: Effects on growth and trace element uptake by five Brassica species

The effects of ‘alperujo’ compost on trace element availability and on microbial activity of two contaminated soils, a calcareous soil (S1) with high contents of Pb and Zn, and an acidic soil (S2) with a substantial amount of Al, As, Pb and Zn, were assessed. Additionally, the growth and capacity for contaminant phytoextraction of five Brassica species were studied. Compost amendment did not affect S1, but in S2 it increased soil pH, thus reducing Al and Zn bioavailability and toxicity. Compost application also increased microbial population and bioactivity in both soils. Brassica plants did not survive in S2, yet they thrived in S1. When compost was applied to S2, Brassica carinata, Brassica napus and Brassica oleracea grew adequately. Considering both the capacity to accumulate trace elements in the shoot and the ability to grow in the contaminated soils tested, the most efficient phytoextractors were Brassica juncea in S1 (particularly for Zn) and Brassica oleracea in S2 (for Al, As, Pb and Zn).     

Characterization of different compost extracts using Fourier-transform infrared spectroscopy (FTIR) and thermal analysis

Compost extract or “compost tea” is a liquid extract of compost obtained by mixing compost and water for a defined period of time. Compost tea contains nutrients and a range of different organisms and is applied to the soil or directly to plants with the principal aim of suppressing certain plant diseases. In addition, the application of compost tea supplies nutrients and organic matter to the soil. Thermal analysis and Fourier transform infrared spectroscopy (FTIR) are two widely applied analytical techniques for establishing the stability of compost, and although numerous studies have evaluated the capacity of compost tea to suppress plant diseases, there are no studies employing these techniques to characterize compost-tea. For the present study, 12 compost extracts were produced under varying conditions in a purpose-built reactor. Two different composts, an stable compost produced from manure and an unstable compost produced from municipal solid waste, respectively, two aeration systems (aerated and non-aerated extracts) and three temperatures (10, 20 and 30°C) were used in these experiments. The extracts were freeze-dried and subsequently analysed, together with the two composts, by means of FTIR and thermal analysis. Extracts produced from high stability compost, independently of the conditions of aeration and temperature, showed very similar results. In contrast, differences among extracts produced from the unstable compost were more noticeable. However, the different conditions of aeration and temperature during the production of the extracts only explained partially these differences, since the transformations undergone by compost over the 3 months that the experiments lasted were also reflected in the composition of the extracts. In spite of everything, extraction process favoured the degradation of easily oxidizable organic matter, which was more abundant in unstable compost. This degradation was more intense for non-aerated processes, probably due to the longer duration of these (10 days) with respect to aerated extractions (2 days). The effect of temperature was not clear in these experiments, although high temperatures could increase micro organism activity and consequently favour the degradation of easily oxidizable organic matter.     

Microbiological parameters as indicators of compost maturity

AIMS: The objectives of this study were to determine the changes of microbial properties of pig manure collected from pens with different management strategies and composted using different turning and moisture regimes; relate their association with humification parameters and compost temperature; and identify the most suitable microbial indicators of compost maturity. METHODS AND RESULTS: Six different microbial parameters, including total bacterial count, oxygen consumption rate, ATP content, dehydrogenase activity, and microbial biomass C and N, along with humification parameters [humic acid (HA), fulvic acid (FA) and HA : FA ratio] and compost temperature were monitored during composting. Significant positive correlations were found between temperature and microbial properties, including O2 consumption rate, ATP content, dehydrogenase activity, and microbial biomass N. The humification parameters also showed significant correlations with microbial properties of the manure compost. For instance, HA contents of pig manures was positively correlated with total aerobic heterotrophs, and microbial biomass N and C; and negatively correlated with O2 consumption rate, ATP content, and dehydrogenase activity. Among the six microbial parameters examined, dehydrogenase activity was the most important factor affecting compost temperature and humification parameters. Composting strategies employed in this study affected the speed of composting and time of maturation. If the moisture content is maintained weekly at 60% with a 4-day turning frequency, the pig manure will reach maturity in 56 days. CONCLUSIONS: The composting process went through predictable changes in temperature, microbial properties and chemical components despite differences in the initial pig manure and composting strategies used. Among the six microbial parameters used, dehydrogenase activity is the most suitable indicator of compost maturity. Compared with respiration rate, ATP content and microbial biomass procedures, dehydrogenase activity is the simplest, quickest, and cheapest method that can be used to monitor the stability and maturity of composts. SIGNIFICANCE AND IMPACT OF THE STUDY: The results presented here show that microbial parameters can be used in revealing differences between composts and compost maturity. The statistical relationship established between humification parameters and microbial parameters, particularly dehydrogenase activity, demonstrates that it is possible to monitor the composting process more easily and rapidly by avoiding longer and more expensive analytical procedures.     

Municipal solid waste compost amendment in agricultural soil: changes in soil microbial biomass

Agricultural application of Municipal Solid Waste (MSW), as nutrient source for plants and as soil conditioner, is the most cost-effective option of MSW management because of its advantages over traditional means such as landfilling or incineration. However, agricultural application of MSW can lead to a potential environmental threat due to the presence of pathogens and toxic pollutants. Composting is an attractive alternative of MSW recycling. Application of MSW compost (MSWC) in agricultural soils can directly alter soil physico-chemical properties as well as promote plant growth. The soil microbial biomass, considered as the living part of soil organic matter, is very closely related to the soil organic matter content in many arable agricultural soils. Numerous studies, with different MSWC amendment doses on different soil types and under different water regimes revealed no detrimental effect on soil microbial biomass. In this review, we show the state of art about the effects of MSWC amendment on soil microbial biomass.     

葡萄籽对猪粪秸秆高温堆肥中微生物群落与碳氮含量的影响

以猪粪与秸秆(鲜质量10.5∶1)为基础,在自制的强制通风静态堆肥反应箱中进行堆肥化试验,研究添加8%葡萄籽对猪粪秸秆高温堆肥中微生物群落演替和碳氮转化的影响.在堆肥化的30 d里,分7次采集不同时期的堆肥样品,测定堆肥中微生物区系、微生物生理群的数量及堆肥碳氮含量.结果表明：添加葡萄籽使堆肥中细菌数量略高、放线菌数量显著增加、真菌数量明显降低,细菌/放线菌下降;氨化细菌和反硝化细菌数量降低;而硝化细菌、固氮菌和纤维素分解菌数量增多;铵态氮和有机碳含量下降,而硝态氮含量明显提高.堆肥中硝态氮含量与放线菌数量呈极显著正相关关系.添加葡萄籽使堆体升温快且高温期稳定,堆肥含水率波动较小,从而使堆肥高温期放线菌和亚硝化细菌的波动较小,数量较高,有利于堆肥中硝态氮含量的增加.     

Tropical soils degraded by slash‐and‐burn cultivation can be recultivated when amended with ashes and compost

In many tropical regions, slash‐and‐burn agriculture is considered as a driver of deforestation; the forest is converted into agricultural land by cutting and burning the trees. However, the fields are abandoned after few years because of yield decrease and weed invasion. Consequently, new surfaces are regularly cleared from the primary forest. We propose a reclamation strategy for abandoned fields allowing and sustaining re‐cultivation. In the dry region of south‐western Madagascar, we tested, according to a split‐plot design, an alternative selective slash‐and‐burn cultivation technique coupled with compost amendment on 30–year‐old abandoned fields. Corn plants (Zea mays L.) were grown on four different types of soil amendments: no amendment (control), compost, ashes (as in traditional slash‐and‐burn cultivation), and compost + ashes additions. Furthermore, two tree cover treatments were applied: 0% tree cover (as in traditional slash‐and‐burn cultivation) and 50% tree cover (selective slash‐and‐burn). Both corn growth and soil fertility parameters were monitored during the growing season 2015 up to final harvest. The amendment compost + ashes strongly increased corn yield, which was multiplied by 4–5 in comparison with ashes or compost alone, reaching 1.5 t/ha compared to 0.25 and 0.35 t/ha for ashes and compost, respectively. On control plots, yield was negligible as expected on these degraded soils. Structural equation modeling evidenced that compost and ashes were complementary fertilizing pathways promoting soil fertility through positive effects on soil moisture, pH, organic matter, and microbial activity. Concerning the tree cover treatment, yield was reduced on shaded plots (50% tree cover) compared to sunny plots (0% tree cover) for all soil amendments, except ashes. To conclude, our results provide empirical evidence on the potential of recultivating tropical degraded soils with compost and ashes. This would help mitigating deforestation of the primary forest by increasing lifespan of agricultural lands.     

菇床废料对设施栽培土壤盐害下小白菜生长的影响

通过盆栽试验,研究了菇床废料对缓解设施栽培土壤次生盐渍化及小白菜盐胁迫的影响.结果表明:盐渍化土壤添加菇床废料(0～30 g·kg-1)栽培60 d后,土壤pH趋于中性,有机质和有效磷含量显著提高,水溶性盐总量的增加幅度小于不加菇床废料的对照土壤;当菇床废料添加量为10 g·kg-1时,土壤盐分增加幅度最小,说明适量添加菇床废料可以减少设施栽培土壤的盐分积累.加入菇床废料后,小白菜的种子发芽率、株高、鲜质量、叶绿素SPAD值和维生素C含量均有所提高,脯氨酸含量显著下降,说明菇床废料能改善小白菜生长环境,有效缓解盐胁迫对小白菜的危害.     

Effects of hydrocarbon enrichment on trichloroethylene biodegradation and microbial populations in finished compost

This study focused on the capacity of finished compost, often used as packing material in biofiltration units, to support microbial biodegradation of trichloroethylene (TCE). Finished compost was enriched with methane or propane (10% head space) to stimulate cometabolic biodegradation of gaseous TCE. Successful hydrocarbon enrichment, as indicated by rapid depletion of hydrocarbon gas and measurable growth of hydrocarbon-utilizing micro-organisms, occurred within a week. Within batch reactor flasks, approximately 75% of head space TCE (1–40 ppmv) was rapidly sorbed onto compost material. Up to 99% of the remaining head space TCE was removed via biodegradation in compost enriched with either hydrocarbon. Hydrocarbon enrichment with methane or propane corresponded to 10-fold increases in methanotrophic or propanotrophic populations, respectively. Based on growth assessment under different nutritional regimes, there appeared to be complex metabolic interactions within the microbial community in enriched compost. Five separate bacterial cultures were derived from the hydrocarbon-enriched compost and assayed for the ability to degrade TCE.     

Suitable Chemical Properties of Animal Manure Compost to Facilitate Pb Immobilization in Soil

Chemical immobilization using animal manure compost is one of the most useful for low-cost, in-situ soil remediation techniques. The present study aimed to determine suitable chemical properties of animal manure compost to facilitate lead (Pb) immobilization in soil. The level of mobile Pb in soil amended with swine compost was higher than that amended with cattle compost during the early stage of incubation. However, the level of mobile Pb was almost the same in soil amended with both types of compost on day 184 of incubation. The ratio of the residual fraction after sequential extraction was enhanced in soil amended with both types of compost, particularly swine compost. X-ray diffractometer (XRD) results demonstrated the precipitation of Pb phosphate minerals, such as pyromorphite, in Pb-sorbed composts, particularly swine compost. Amendment using swine compost could reduce Pb solubility even when it had a high content of water-soluble organic matter because it significantly lowered Pb phase solubility. The amendment with swine compost improved plant growth and microbial activity. This study suggests that composts with high phosphorus (P) content are suitable for Pb immobilization amendment even if they have a high water-soluble organic matter content.     

Continuous vapor-phase trichloroethylene biofiltration using hydrocarbon-enriched compost as filtration matrix

Two sources of finished compost material were examined for the capacity to support trichloroethylene(TCE)-degrading microbial populations in a gas-phase bioreactor. Gaseous hydrocarbon was passed through the bioreactor to stimulate cometabolic oxidation of TCE. Significant differences in TCE removal efficiencies were observed between the two compost types, and between hydrocarbon-stimulated and non-stimulated compost. At an average column retention time of 5.6 min, deciduous leaf debris compost removed more than 95% of a 5–50 ppm (by vol.) TCE gas stream, whereas less than 15% removal was observed under similar conditions with a woodchip and bark compost. Trichloroethylene removal efficiency varied with the hydrocarbon-stimulation regime employed, although propane and methane stimulated TCE degradation equally well. Amendment of compost with granular activated carbon substantially increased biological TCE removal. Differences in TCE removal efficiencies observed between the two compost types and between hydrocarbon-stimulated and non-stimulated composts were investigated in terms of changes in the overall heterotrophic microbial populations by using community-level physiological profile analysis. Received: 14 April 1997 / Received revision: 21 July 1997 / Accepted: 25 August 1997     

Effect of matured compost as a bulking and inoculating agent on the microbial community and maturity of cattle manure compost

Cattle manure composts were consecutively manufactured. Compost that reached maturity first was used as a bulking and inoculating agent for subsequent compost production. The microbial community was measured through phospholipid fatty acid analysis. Changes in the content of fatty acid methyl esters derived from phospholipids were similar in all the composts. The diversity index for the fatty acid methyl ester content increased in the secondary-produced compost from the onset of composting. Microbial succession was accelerated using matured compost. The proportion of biomarker fatty acids for gram-positive bacteria also increased in the secondary-produced compost from the early stage of composting. Changes in germination index indicated the maturity stage of the compost. The proportion of biomarker fatty acids for gram-positive bacteria was positively correlated to the germination index, indicating that phospholipid fatty acid analysis is an indicator for evaluating the maturity of cattle manure composts.     

Effects of Compost on Colonization of Roots of Plants Grown in Metalliferous Mine Tailings, as Examined by Fluorescence In Situ Hybridization

The relationship between compost amendment, plant biomass produced, and bacterial root colonization as measured by fluorescence in situ hybridization was examined following plant growth in mine tailings. Mine tailings can remain devoid of vegetation for decades after deposition due to a combination of factors that include heavy metal toxicity, low pH, poor substrate structure and water-holding capacity, and a severely impacted heterotrophic microbial community. Research has shown that plant establishment, a desired remedial objective to reduce eolian and water erosion of such tailings, is enhanced by organic matter amendment and is correlated with significant increases in rhizosphere populations of neutrophilic heterotrophic bacteria. Results show that for the acidic metalliferous tailings tested in this study, compost amendment was associated with significantly increased bacterial colonization of roots and increased production of plant biomass. In contrast, for a Vinton control soil, increased compost had no effect on root colonization and resulted only in increased plant biomass at high levels of compost amendment. These data suggest that the positive association between compost amendment and root colonization is important in the stressed mine tailings environment where root colonization may enhance both microbial and plant survival and growth.     

Production of compost from marine waste: evaluation of the product for use in ecological agriculture

The sea contains large amounts of resources that are sometimes considered as waste. Such material includes the waste generated by the fish-processing industry and seaweed that is washed up on shores. In this study, these waste products were windrow composted, along with pine bark as a source of carbon and aeration. The final mix proportions were 20 % seaweed, 20 % fish waste, and 60 % pine bark (v/v). After 10 weeks, stable, well-structured, hygienic compost, which was rich in organic matter and nutrients and had a low metal content, was obtained. Tests for maturity, hygiene, and phytotoxicity, along with a detailed physical and chemical characterization, showed that this compost can be used as an organic amendment and/or growth substrate for use in ecological agriculture. The only limiting feature was the high salinity, which could easily be lowered prior to composting the material.     

Characters of aerated compost tea from immature compost that limit colonization of bean leaflets by Botrytis cinerea

Aims: The aim was to produce and characterize an aerated compost tea (ACT) that suppressed growth of the plant pathogen Botrytis cinerea. Methods and Results: Three different open‐windrow composts were sampled weekly from the early secondary mesophilic stage until maturity. Each 10 kg of compost sample was extracted in 30 l of aerated water for 24, 48 or 72 h. Relative to water, all batches of ACT applied to detached bean leaflets reduced lesion development following single‐point inoculations of B. cinerea. There was a significant linear, inverse relationship between the internal windrow temperature of compost (≤51°C) used to prepare ACT and the extent of lesion development. Bacterial diversity in ACTs from one windrow was highest using compost sampled at 48°C. The compost weight‐to‐water volume ratios of 1 : 3, 1 : 10 or 1 : 30, using compost sampled from a fourth windrow at 50°C, also produced ACTs that reduced the growth of B. cinerea on bean leaflets. The ‘1 : 3’ ACT, and to a lesser degree the same ACT filtered to remove micro‐organisms, inhibited the germination of B. cinerea conidia. Conclusions: ACT produced using the methods reported here suppressed the growth of B. cinerea on bean leaflets, with an abundant and diverse microbial community likely to contribute to pathogen suppression. Significance and Impact of the Study: This is the first report of the use of immature compost to produce a pathogen‐suppressive ACT, suggesting that compost stage is an important production variable.     

Effect of initial physical characteristics on sludge compost performance

To develop an active microbial activity quickly developing stabilizing thermophilic temperatures during the composting of wastewater sludge, the bulking agent (BA) plays a major role in establishing the recipe structure, exposed particle surface area and porosity. To optimize the biodegradation of a sludge compost recipe, the objective of this paper was to study the effect and interaction of initial moisture content (MC) and BA particle size distribution. Three 300 L insulated laboratory composters were used to treat two series of ten (10) recipes with different combinations of MC and BA particle size distribution. Using a to wastewater sludge to BA dry mass ratio of 1/6, the ten (10) recipes were repeated using two BA, residues recycled from a commercial sludge composting plant and crushed wood pallets. Each four week trial monitored O₂ uptake, temperature, compost consolidation and airflow distribution. The Central Composite Factor Design method produced a model from the results estimating the impact of a wider range of MC and BA particles size distribution. The MC directly affected the total O₂ uptake and therefore, organic matter biodegradation. The BA particle size distribution influenced compost consolidation with a MC crossed effect. Both BA particle size distribution and MC influenced compost airflow dispersion. Composting was optimized using the BA consisting of recycled green waste residues with particle size of 20–30 mm and a 55% MC. The predictive models suggested the need for further optimization of sludge and wood residue composting recipe.     

Effects of spawn,supplement and phase II compost additions and time of re-casing second break compost on mushroom (Agaricus bisporus) yield and biological efficiency

Three cropping experiments (0710, 0803 and 0805) were conducted to determine the effect of adding spawn, various levels of delayed release nutrient, and phase II compost to 2nd break mushroom compost (2BkC) on mushroom yield and biological efficiency (BE). We also investigated the effect of delaying time of re-casing non-supplemented and supplemented 2BkC on mushroom yields and BEs. The addition of 14.6% spawn to nutrient-supplemented 2BkC (w.w./d.w) increased yield by 11.1% over the control (no spawn) but did not affect BE. The addition of delayed release supplements to 2BkC increased maximum yields by 29–54%, depending on the treatment. Substitution of 15% phase II compost in 2BkC (15/85) did not significantly affect mushroom yields. However, use of 15% phase II compost in 2BkC increased the response of the mixture to delayed release supplement. Yield response to increasing levels of supplement was greater in the 15/85 mixture compared to 100% 2BkC. Yields also increased as time of re-casing was delayed up to 10 days. Mushroom yields increased approximately 2.1% for each day re-casing was delayed. Overall yields were generally higher from commercial 2BkC compared to 2BkC originating from the Penn State Mushroom Research Center (MRC) probably due to nitrogen (N) content of the 2BkC. Nitrogen content in commercial 2BkC (Crop 0805) was 3% while N content in 2BkC from Crops 0710 and 0803 was 2.2% and 2.1%, respectively. By optimizing supplement levels and adding 15% phase II compost to commercial 2BkC, or by delaying casing by 5–10 days, it was possible to obtain BEs that were equivalent to supplemented phase II compost.     

Soil Water Content and Organic Carbon Availability Are Major Determinants of Soil Microbial Community Composition

Exploration of environmental factors governing soil microbial community composition is long overdue and now possible with improved methods for characterizing microbial communities. Previously, we observed that rice soil microbial communities were distinctly different from tomato soil microbial communities, despite management and seasonal variations within soil type. Potential contributing factors included types and amounts of organic inputs, organic carbon content, and timing and amounts of water inputs. Of these, both soil water content and organic carbon availability were highly correlated with observed differences in composition. We examined how organic carbon amendment (compost, vetch, or no amendment) and water additions (from air dry to flooded) affect microbial community composition. Using canonical correspondence analysis of phospholipid fatty acid data, we determined flooded, carbon-amended (+C) microcosm samples were distinctly different from other +C samples and unamended (–C) samples. Although flooding without organic carbon addition influenced composition some, organic carbon addition was necessary to substantially alter community composition. Organic carbon availability had the same general effects on microbial communities regardless of whether it was compost or vetch in origin. In addition, flooded samples, regardless of organic carbon inputs, had significantly lower ratios of fungal to bacterial biomarkers, whereas under drier conditions and increased organic carbon availability the microbial communities had higher proportions of fungal biomass. When comparing field and microcosm soil, flooded +C microcosm samples were most similar to field-collected rice soil, whereas all other treatments were more similar to field-collected tomato soil. Overall, manipulating water and carbon content selected for microbial communities similar to those observed when the same factors were manipulated at the field scale.     

Comparison of signature lipid methods to determine microbial community structure in compost

The microbial community structure changes substantially during the composting process and simple methods to follow these changes can potentially be used to estimate compost maturity. In this study, two such methods, the microbial identification (MIDI) method and the ester-linked (EL) procedure to determine the composition of long-chain fatty acids, were applied to compost samples of different age. The ability of the two methods to describe the microbial succession was evaluated by comparison with phospholipid fatty acid (PLFA) analysis on the same samples.Samples were taken from a 200-l laboratory compost reactor, treating source-separated organic household waste. During the initial stages of the process, the total concentration of fatty acids in compost samples treated with the EL and MIDI methods was many times higher than with the PLFA method. This was probably due to the presence of fatty acids from the organic material in the original waste. However, this substantial difference between PLFA and the other two methods was not found later in composting. Although the PLFA method gave the most detailed information about the growth and overall succession of the microbial community, the much simpler MIDI and EL methods also successfully described the shift from the initially dominating straight chain fatty acids to iso- and anteiso branched, 10 Me branched and cyclopropane fatty acids in the later stages of the process. Thus, the MIDI and EL extraction methods appear to be suitable for analysis of microbial FAME profiles in compost, particularly in the later stages of the process.