Isolation and characterization of novel polymorphic nuclear microsatellite markers from Ophrys fusca (Orchidaceae) and cross-species amplification

The present study reports the isolation and characterization of eight new polymorphic microsatellite loci from the sexually deceptive orchid Ophrys fusca. Microsatellites were isolated from two partially enriched genomic libraries using FIASCO (Fast Isolation by AFLP of Sequences COntaining repeats). Seventy-three loci were screened for primer design and primer pairs corresponding to eight different loci were selected for microsatellite characterization of two Portuguese populations. Total number of alleles per locus ranged from 10 to 32. All loci showed a high level of observed heterozygosity (H₀) ranging from 0.33 to 1 and were possible to amplify in 16 other species of Ophrys using the same primers. H. C. Cotrim and F. A. Monteiro have contributed equally to this work.     

近缘种扩增法对黑叶猴微卫星位点的筛选及特征分析(英文)

微卫星位点近缘种筛选法使得在探讨各种灵长类种群遗传结构和生殖策略上更加便捷。我们利用138条人类微卫星引物在黑叶猴中进行筛选,得到了23个具有多态性位点。在28个检测个体中,每个位点的等位基因数为3到9个,期望杂合度为0.62,观测杂合度为0.50,其中有7个位点偏离Hardy-Weinberg平衡,9个位点存在无效等位基因现象。但是各位点之间均未检测到连锁不平衡现象。这些位点将在黑叶猴种群遗传结构的研究中发挥重要作用。     

Isolation and characterization of polymorphic microsatellite loci from a dinucleotide-enriched genomic library of starry flounder (Platichthys stellatus) and cross-species amplification

Starry flounder (Platichthys stellatus) is a rare fish species in China. Here, we reported 12 polymorphic microsatellite loci isolated from a dinucleotide-enriched genomic library of starry flounder (P. stellatus). The number of alleles, observed and expected heterozygosity per locus in 30 individuals ranged from two to six, from 0.2500 to 1.0000 and from 0.4512 to 0.7667, respectively. One locus significantly deviated from Hardy–Weinberg equilibrium after Bonferroni correction and no significant linkage disequilibrium between pairs of loci was found. Cross-species amplification of these microsatellite loci in additional three fish species was performed. These polymorphic microsatellite loci would be useful for investigating genetic population structure and construction of genetic linkage map in P. stellatus. Guidong Miao and Changwei Shao have contributed equally.     

Novel microsatellite markers for Begonia maxwelliana and transferability to 23 Begonia species of Peninsular Malaysia

Begonias are hyper-diverse and important horticultural plants. Six polymorphic microsatellite markers were developed from CT- and GT-enriched libraries of Begonia maxwelliana. The number of alleles per locus ranged from 2 to 12 and the observed heterozygosity ranged from 0.036 to 0.813. Null alleles were detected in one locus (Bma161) after Bonferroni correction. All the six markers were amplifiable in 23 selected Begonia species with the success rates of 17–100%. On average, species of the same section as B. maxwelliana (i.e. sect. Platycentrum) yielded higher transferability (91%). These markers will be useful for population genetic studies of the genus Begonia.     

高原鼢鼠寄生皮蝇的形态和分子鉴定

皮蝇蛆病是由双翅目(Diptera)狂蝇科(Oestridae)皮蝇亚科(Hypodermatinae)幼虫感染所导致的一种寄生虫病,会严重影响农牧业发展与公共卫生安全.本研究采用形态学和分子系统学方法对甘南藏族自治州碌曲境内高原鼢鼠(Eospalax baileyi)感染的皮蝇进行鉴定,旨在确定皮蝇的种类,为皮蝇蛆病...     

Isolation and characterization of microsatellite markers from Hibiscus rosa-sinensis (Malvaceae) and cross-species amplifications

We report on the development of 10 microsatellite markers in Hibiscus rosa-sinensis (Hrs). Three markers were obtained from sequences available in GenBank and seven were isolated using a two-step ‘primer extension’ procedure, based on the microsatellite-AFLP (M-AFLP) technique. Polymorphism was explored in 21 Hrs genotypes representing the genetic variation within commercial varieties. Inter-specific amplification was assessed on 12 Hibiscus wild species. A total of 45 and 56 alleles (ranging from 1 to 10 for each locus) was amplified respectively from the 21 Hrs varieties and among the full Hibiscus spp. genotype set. Primers and conditions for polymerase chain reaction (PCR) amplification of the detected loci are reported.     

Utility of pairwise mtDNA genetic distances for predicting cross-species microsatellite amplification and polymorphism success in fishes

In many studies involving microsatellites cross-species amplification, primers designed for one (source) species are used to amplify homologous loci in related (target) species. However, it is not clear how closely related the species must be to attain significant success. Genetic divergence is a clear and easy way to assess similarity between species and provides an accurate measure of their evolutionary distance. Eight Mediterranean target species of the family Serranidae were analysed using twelve primers developed for Serranus cabrilla. Additionally, two mitochondrial genes (12S rRNA and 16S rRNA) were chosen on the basis of their extensive use in phylogenetic and evolutionary analyses to compute genetic divergence between the species. Significant negative correlations were found between genetic divergence and both cross-species amplification and maintained polymorphism of microsatellite markers, which could be generalized by gathering information from different fish studies. The success of obtaining amplifiable and polymorphic microsatellite loci can be a priori approximated knowing the mtDNA genetic divergence between a given source and target species using our inferred regression equations. Electronic Supplementary Material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

甘肃鼢鼠和高原鼢鼠小肠组织学结构的比较

甘肃鼢鼠小肠仅为相同体重高原鼢鼠小肠长度的70％,为满足相同的能量需求,甘肃鼢鼠消化系统中某些部位必然会发生相应调整,以代偿其较短的小肠在能量消化吸收方面的不足.本研究应用苏木精-伊红染色技术,对成年甘肃鼢鼠和高原鼢鼠的小肠组织学结构进行了对比研究.结果显示,甘肃鼢鼠十二指肠、空肠和回肠绒毛间距均显著小于高原鼢鼠,而其空肠管径显著大于高原鼢鼠,两种鼢鼠小肠总绒毛面积无明显差异.研究表明,甘肃鼢鼠通过缩小小肠绒毛间距并增大空肠管径来增加小肠吸收表面积,减缓食物通过速率,提高小肠对食物的营养吸收和消化功能,进而代偿其较短的小肠在能量消化和吸收方面的不足.     

鲤科鱼蓝黑鲮微卫星位点的种间扩增(英文)

本研究使用105对微卫星引物对7种鲤科鱼类进行跨越种间PCR扩增,共得到14个多态性微卫星位点.其中9个扩增效果较好的位点用于分析来自帕吉勒提河(Bhagirathi, n=20)和戈达瓦里河(Godavari, n=25)的蓝黑鲮(Labeo calbasu)样品的遗传多样性.结果显示,前者在每个位点的平均等位基因数为7.33,而后者为8 1,期望杂合度介于0.795(Bhagirathi)和0.801(Godavari)之间;4个位点MFW11* (Godavari)、R1*(Godavari)、R3* (Bhagirathi) 和 Lr38*(Bhagirathi和Godavari)都表现出明显的杂合子缺失和哈迪温伯格平衡偏离;而任意两位点间都未观测到连锁不平衡现象;位点R3*极可能存在无效等位基因.上述结果表明这些多态性微卫星位点作为共显性标记在蓝黑鲮群体遗传学研究中有着较好的应用前景.     

Diet selection in overwinter caches of plateau zokor (Eospalax baileyi)

Subterranean herbivores affect the plant community by plant consumption and burrowing activities. However, diet selection of subterranean herbivores has not been studied in detail in complex natural fields, mainly for lack of an accurate method to determine diet species, frequency, and biomass. Plateau zokors' (Eospalax baileyi) caching habit for the long inclement winter makes it possible to solve this problem. We studied the diet composition and biomass in caches and vicinity of plateau zokors' burrow systems. We found that plateau zokors are dietary generalist but show a significant selection among the available food items, plant parts, functional groups, organ types, and habitats. These results suggested that plateau zokors strictly selected their diet and were able to adjust their foraging strategy according to the different conditions of food abundance and quality. Plateau zokors' selective foraging can directly reduce the proportion of toxicity forbs; plateau zokors can be recognized as an important element to influence the alpine meadow plant community and cattle husbandry.     

Genetic diversity estimation and core collection construction of Sinojackia huangmeiensis based on novel microsatellite markers

Sinojackia huangmeiensis is a critically endangered tree species in the Styracaceae endemic to China. To create tools to better evaluate the genetic diversity of this species, we used a modified genomic library enrichment method, the PETUER (Probe Extension and TEACl Universal EnRichment) method, to develop genetic markers. The resulting 18 microsatellite loci had high polymorphism with 3–12 alleles per locus and showed negligible stutter. Observed (H_O) heterozygosities were 0.057–0.724, and polymorphism information content (PIC) was 0.109–0.794. No significant linkage disequilibrium between pairs of loci was found. All 123 individuals found in the National Natural Reserve of Longgan Lake was genotyped at the 18 loci and used to estimate a UPGMA dendrogram. Using an iterative clustering method, a set of 18 individuals was established as a core collection to represent genetic diversity and would be useful to facilitate the conservation for S. huangmeiensis. In addition, we tested the 18 loci for cross-species amplification in three other Sinojackia species and the closely related Changiostyrax dolichocarpa. These polymorphic loci will be valuable for future population genetic and phylogenetic studies of S. huangmeiensis and congeneric species, as well as in closely related Styracaceae.     

祁连山东段高原鼢鼠种群特征与环境因子的关系分析

为明晰环境因子对高原鼢鼠(Eospalax baileyi)种群特征的影响,本研究以高原鼢鼠的种群密度、体重、妊娠率作为其种群特征指标,选择2008~2014年的归一化植被指数(NDVI)、年均降水量和年均温为环境因子,分析种群特征与环境因子在时间尺度上的变化关系。2008~2014年,研究区域归一化植被指数(NDVI)年度间无显著性差异(P0.05),高原鼢鼠体重、妊娠率和种群密度年度间均无显著性差异(P0.05);高原鼢鼠雌雄个体体重以及种群密度和妊娠率均与环境因子归一化植被指数(NDVI)、年均降水量及年均温均无相关关系(P0.05)。以上结果说明,高原鼢鼠体重变化、妊娠率和种群密度与栖息地植被生长状况及气候因子无相关关系,环境因子对高原鼢鼠种群特征的影响较小。     

Reverse ascertainment bias in microsatellite allelic diversity in owls (Aves, Strigiformes)

A rich source of markers may be overlooked by screening for polymorphism in the source species only. We screened 129 microsatellite loci isolated from the powerful owl (Ninox strenua) against two closely related species; Ninox connivens and Ninox novaeseelandiae. From the screening effort 20 polymorphic markers were isolated, including six loci which were originally discarded as they were monomorphic in the source species. Further cross-species amplification of all 20 loci across species from two families, Strigidae and Tytonidae, revealed unusually high levels of polymorphism within closely related species, and limited success within phylogenetically distant species. Routine screening of multiple species during the marker development phase can yield a wider range of polymorphic markers which can subsequently enhance cross-species amplification attempts.     

高原鼢鼠精子发生的形态学特征和关键调控因子探究

季节性繁殖是动物在长期进化中为适应环境变化而形成的生活史特征,受光周期和下丘脑-垂体-性腺轴的严密调控。高原鼢鼠（Eospalax baileyi）是青藏高原特有的地下啮齿类动物,其繁殖活动表现出明显的季节性。然而,地下啮齿类动物精子发生的形态特征和关键调控因子尚不明确。本研究以成年高原鼢鼠为研究对象,发现繁殖期成年雄性睾丸曲精小管内有各级生殖细胞,附睾内有长形精子,生精上皮可分为10个期;而非繁殖期睾丸重量显著下降,曲精小管内仅见精原细胞和支持细胞。激素水平检测结果显示,与非繁殖期相比,繁殖期褪黑素水平显著降低（P < 0.05）,促性腺激素释放激素、促黄体生成素和睾酮水平显著升高（P < 0.05）,而卵泡刺激素水平无显著差异。进一步研究发现,精原细胞分化的关键诱导因子维甲酸水平和其调控基因表达均呈季节性变化,且外源维甲酸注射能够诱导非繁殖期高原鼢鼠重启精子发生。综上,高原鼢鼠虽为地下动物,但其精子发生与下丘脑-垂体-性腺轴激素水平明显相关,且受睾酮和维甲酸信号的调控。本研究首次揭示了高原鼢鼠精子发生的形态学特征和关键调控因子,为理解季节性繁殖动物尤其是地下啮齿类动物生殖生理的调控机制提供了重要参考。     

Isolation and characterization of microsatellite markers for Pinellia ternata and cross-species amplification

In this study, we isolated and characterized 12 microsatellite loci for Pinellia ternata. Polymorphism of these 12 loci was assessed in 46 individuals collected from two wild populations. All the loci were polymorphic with four to 13 alleles per locus and the observed and expected heterozygosities ranged from 0.312 to 0.680 and from 0.506 to 0.734, respectively. None of the loci showed significant deviation from Hardy–Weinberg equilibrium (P < 0.05). No significant linkage disequilibrium was observed between pairs of studied loci. In addition, most markers amplified successfully in three closely related taxa that are Pinellia cordata, P. peltata and P. pedatisecta. These microsatellite markers could provide a useful tool for genetic structure studies of the Pinellia species.     

Highly polymorphic microsatellite loci for the Parsley frog (Pelodytes punctatus): characterization and testing for cross-species amplification

A microsatellite library was developed using genomic DNA of the Parsley frog, Pelodytes punctatus, an amphibian species which inhabits Mediterranean temporary pond systems. Number of alleles and heterozygosity ranged from 10 to 25 and from 0.66 to 0.90, respectively. Cross-species amplification was successful for 13 of the 15 developed loci for the related species, Pelodytes ibericus. The high levels of polymorphism revealed by these loci will be extremely useful for characterizing the population genetic diversity and structure and to estimate levels of dispersal and gene flow in the species P. punctatus and P. ibericus.     

Isolation and characterization of 13 microsatellite markers for the viviparous surfperch Ditrema temmincki (Embiotocidae) and cross-species amplification

Thirteen microsatellite loci were isolated from a size-selected genomic library of the surfperch (Ditrema temmincki Bleeker). All loci displayed a high degree of length polymorphism, as observed in the total number of alleles per locus (two to 23) and a high degree of estimated heterozygosity, ranging from 0.080 to 0.893. The primers developed for D. temmincki were also tested for their ability to amplify homologous sequences in D. viride and Neoditrema ransonetii. Distinct differences were observed among three species of surfperches, in both genetic variability and the frequency distribution of the alleles.