Visual pigment absorbance and spectral sensitivity of the <Emphasis Type="Italic">Mysis relicta</Emphasis> species group (Crustacea,Mysida) in different light environments

Visual-pigment absorbance spectra and eye spectral sensitivities were examined in eight populations of opossum shrimp from different light environments. Four Finnish populations, two from the Baltic Sea and two from freshwater lakes, represent Mysis relicta, sensu stricto. The sibling species M. salemaai and M. diluviana are represented by, respectively, two Baltic Sea populations and two populations from freshwater lakes in Idaho, USA. In M. relicta, the visual pigments of the two lake populations were similar (λ_max=554.3±0.8 nm and 556.4±0.4 nm), but significantly red-shifted compared with the sea populations (at 529 and 535 nm) and with M. salemaai (at 521 and 525 nm). All these pigments had only A2 chromophore and the lake/sea difference indicates adaptive evolution of the opsin. In M. diluviana, λ_max varied in the range 505–529 nm and the shapes of spectra suggested varying A1/A2 chromophore proportions, with pure A1 in the 505 nm animals. Eye sensitivity spectra were flatter and peaked at longer wavelengths than the relevant visual-pigment templates, but declined with the same slope beyond ca. 700 nm. The deviations from visual-pigment spectra can be explained by ocular light filters based on three types of identified screening pigments.     

Low-temperature energy transfer in LHC-II trimers from the Chl a/b light-harvesting antenna of photosystem II.

Temperature dependence in electronic energy transfer steps within light-harvesting antenna trimers from photosystem II was investigated by studying Chl a pump-probe anisotropy decays at several wavelengths from 675 to 682 nm. The anisotropy lifetime is markedly sensitive to temperature at the longest wavelengths (680-682 nm), increasing by factors of 5 to 6 as the trimers are cooled from room temperature to 13 K. The temperature dependence is muted at 677 and 675 nm. This behavior is modeled using simulations of temperature-broadened Chl a absorption and fluorescence spectra in spectral overlap calculations of Förster energy transfer rates. In this model, the 680 nm anisotropy decays are dominated by uphill energy transfers from 680 nm Chl a pigments at the red edge of the LHC-II spectrum; the 675 nm anisotropy decays reflect a statistical average of uphill and downhill energy transfers from 676-nm pigments. The measured temperature dependence is consistent with essentially uncorrelated inhomogeneous broadening of donor and acceptor Chl a pigments.     

Two equilibration pools of chlorophylls in the Photosystem I core antenna of <Emphasis Type="Italic">Chlamydomonas reinhardtii</Emphasis>

Summary Femtosecond transient absorption spectroscopy was applied for a comparative study of excitation decay in several different Photosystem I (PSI) core preparations from the green alga Chlamydomonas reinhardtii. For PSI cores with a fully interconnected network of chlorophylls, the excitation energy was equilibrated over a pool of chlorophylls absorbing at ∼683 nm, independent of excitation wavelength [Gibasiewicz et al. J Phys Chem B 105:11498–11506, 2001; J Phys Chem B 106:6322–6330, 2002]. In preparations with impaired connectivity between chlorophylls, we have found that the spectrum of chlorophylls connected to the reaction center (i.e., with ∼20 ps decay time) over which the excitation is equilibrated becomes excitation-wavelength-dependent. Excitation at 670 nm is finally equilibrated over chlorophylls absorbing at ∼675 nm, whereas excitation at 695 nm or 700 nm is equilibrated over chlorophylls absorbing at ∼683 nm. This indicates that in the vicinity of the reaction center there are two spectrally different and spatially separated pools of chlorophylls that are equally capable of effective excitation energy transfer to the reaction center. We propose that they are related to the two groups of central PSI core chlorophylls lying on the opposite sides of reaction center.     

Spectral properties of chloroplast membranes as a function of physiological temperatures.

The absorption spectrum of chloroplasts changes as a function of temperature. As chloroplasts are cooled from room temperature to 10°C there are increases in absorption at 675, 500 and 436 nm, plus a small decrease at 685 nm. As the chloroplasts are heated to 34°C there are decreases in absorption at 675, 500 and 436 nm plus increases in absorption at 690 and 400 nm. It is concluded that the temperature dependent change in phase of the membrane lipids (solid to liquid crystal state) modifies the state of chlorophyll aggregation.     

Identifying zones of phenetic compression in West Mediterranean butterflies (Satyrinae): refugia,invasion and hybridization

Aim Distinct insular populations are generally considered important units for conservation. In island–mainland situations, unidirectional introgressive gene flow from the most abundant, typically continental, populations into the smaller island populations can erase native insular genetic units. As an indication of threat, the concept of phenetic slope is developed, a measure proportional to differentiation and to geographical proximity. Location The Western Mediterranean, including the following islands: Sardinia, Sicily, Corsica, Balearics, circum‐Italian, circum‐Sicilian and circum‐Sardo‐Corsican archipelagos. Eastern Europe is included for comparison. Methods Geometric morphometrics was applied to 2392 male genitalia of seven butterfly species groups. Geographic Information System techniques were used to depict the pattern in the distribution of morphotypes. The slope of variation in genital shape was computed to highlight geographical areas showing abrupt morphological changes. Correlation analyses were performed between the mean slope values across sea straits separating islands and nearest sources and ecological traits of the species that underlie their colonization and migration capacity. Results Phenetic slope analysis has revealed that the strait of Messina and the northern Tyrrhenian Sea support particularly contrasting populations. In these areas, mean slopes for species also correlated with certain ecological traits of the species. Sardinia emerges as the most stable refugium for ancestral mediterranean populations. Main conclusions There is strong support for the hypothesis that Italy has experienced invasion by populations from Eastern Europe with postglacial expansion of these populations across Italy. However, propagules are impeded from invading islands by the expanse of sea straits. Even so, sea straits are not invariably barriers. Our results suggest that wind direction in combination with habitat occupancy may have maintained ancestral insular populations in key locations distinguished by phenetic compression. We conclude that native insular populations acting as barriers to introgression in the areas showing particularly steep phenetic slopes deserve attention in conservation programmes.     

Red region excitation spectra of protochlorophyllide in dark-grown leaves from plant species with different proportions of its spectral forms

Etiolated leaves of three different species, maize, wheat, and pea, as well as a pea mutant (lip1) were used to compare the excitation spectra of protochlorophyllide (Pchlide) in the red region. The species used have different composition of short-wavelength and long-wavelength Pchlide forms. The relation between different forms was furthermore changed through incubating the leaves in 5-aminolevulinic acid (ALA), which caused an accumulation of short-wavelength Pchlide forms, as shown by changes in absorption and fluorescence spectra. This is the first time a comprehensive comparison is made between excitation spectra from different species covering an emission wavelength range of 675–750 nm using fluorescence equipment with electronic compensation for the variations in excitation irradiance. The different forms of Pchlide having excitations peaks at 628, 632, 637, 650, and 672 nm could be best measured at 675, 700, 710, 725, and 750 nm, respectively. Measuring emission at wavelengths between 675– 710 nm gave an exaggeration of the short-wavelength forms and measuring at longer wavelengths gave for the pea leaves an exaggeration of the 672 nm peak. In general, an energy transfer from short-wavelength Pchlide forms to long-wavelength Pchlide forms occurred, but such an energy transfer sometimes seemed to be limited as a result of a discrete location of the Pchlide spectral forms. The excitation spectra resembling the absorption spectrum most were measured at an emission wavelength of 740 nm. Measuring the excitation at 710 nm gave higher intensity of the spectra but the short-wavelength forms were accentuated.     

Characterization of chlorophyll–protein complexes isolated from a Siphonous green alga, Bryopsis corticulans

Six chlorophyll–protein complexes are isolated from thylakoid membranes of Bryopsis corticulans by dodecyl-β-d-maltoside polyacrylamide gel electrophoresis. Unlike that of higher plants, the 77 K fluorescence emission spectrum of the CP1 band, the PSI core complexes of B. corticulans, presents two peaks, one at 675 nm and the other at 715–717 nm. The emission peak at 715–717 nm is slightly higher than that at 675 nm in the CP1 band when excited at 438 or 540 nm. However, the peak at 715 nm is obviously lower than that at 675 nm when excited at 480 nm. The excitation spectra of CP1 demonstrate that the peak at 675 nm is mainly attributed to energy from Chl b while it is the energy from Chl a that plays an important role in exciting the peak at 715–717 nm. Siphonaxanthin is found to contribute to both the 675 nm and 715–717 nm peaks. We propose from the above results that chlorophyll a and siphonaxanthin are mainly responsible for the transfer of energy to the far-red region of PSI while it is Chl b that contributes most of the transfer of energy to the red region of PSI. The analysis of chlorophyll composition and spectral characteristics of LHCP¹ and LHCP³ also indicate that higher content of Chl b and siphonaxanthin, mainly presented in LHCP¹, the trimeric form of LHCII, are evolved by B. corticulans to absorb an appropriate amount of light energy so as to adapt to their natural habitats.     

Photoreduction of Protochlorophyllide to Chlorophyllide in 2-d-old Dark-Grown Bean (Phaseolus vulgaris cv. Commodore) Leaves. Comparison with 10-d-old Dark-Grown (Etiolated) Leaves

Two-d-old leaves which do not contain prolamellar bodies synthesizeactive protochlorophyllide in darkness. When protochlorophyllideis photoreduced by one intense white flash, a main chlorophyllidespecies emitting at 690 nm is formed. After the photoreduction,the emission maximum is shifted to 675 nm within 5s. This resultsuggests that in young leaves, chlorophyllide formed after oneflash is quickly released from the active site of NADPH: protochlorophyllideoxidoreductase. This interpretation is strenghtened by time-resolvedfluorescence measurements at room temperature, showing that675 nm emitting chlorophyllide does not transfer excitationenergy to the 696 nm emitting chlorophyllide which is formedin very low amount. In 10-d-old bean leaves, the 690 nm chlorophyllideemitting species formed after one short flash undergoes thewellknown rapid and Shibata spectral shifts. The 675 nm emittingchlorophyllide appears only as a shoulder. At both ages, thefluorescence intensity of the active protochlorophyllide stronglydecreases during and after photoreduction, suggesting rapidmodifications in the close environment of the pigment. Key words: Bean, chlorophyllide, etioplast, proplastid, protochlorophyllide     

The M intermediate of Pharaonis phoborhodopsin is photoactive

The retinal protein phoborhodopsin (pR) (also called sensory rhodopsin II) is a specialized photoreceptor pigment used for negative phototaxis in halobacteria. Upon absorption of light, the pigment is transformed into a short-wavelength intermediate, M, that most likely is the signaling state (or its precursor) that triggers the motility response of the cell. The M intermediate thermally decays into the initial pigment, completing the cycle of transformations. In this study we attempted to determine whether M can be converted into the initial state by light. The M intermediate was trapped by the illumination of a water glycerol suspension of phoborhodopsin from Natronobacterium pharaonis called pharaonis phoborhodopsin (ppR) with yellow light (>450 nm) at -50 degrees C. The M intermediate absorbing at 390 nm is stable in the dark at this temperature. We found, however, that M is converted into the initial (or spectrally similar) state with an absorption maximum at 501 nm upon illumination with 380-nm light at -60 degrees C. The reversible transformations ppR if M are accompanied by the perturbation of tryptophan(s) and probably tyrosine(s) residues, as reflected by changes in the UV absorption band. Illumination at lower temperature (-160 degrees C) reveals two intermediates in the photoconversion of M, which we termed M' (or M'(404)) and ppR' (or ppR'(496)). A third photoproduct, ppR'(504), is formed at -110 degrees C during thermal transformations of M'(404) and ppR'(496). The absorption spectrum of M'(404) (maximum at 404 nm) consists of distinct vibronic bands at 362, 382, 404, and 420 nm that are different from the vibronic bands of M at 348, 368, 390, and 415 nm. ppR'(496) has an absorption band that is shifted to shorter wavelengths by 5 nm compared to the initial ppR, whereas ppR'(504) is redshifted by at least 3 nm. As in bacteriorhodopsin, photoexcitation of the M intermediate of ppR and, presumably, photoisomerization of the chromophore during the M --> M' transition result in a dramatic increase in the proton affinity of the Schiff base, followed by its reprotonation during the M' --> ppR' transition. Because the latter reaction occurs at very low temperature, the proton is most likely taken from the counterion (Asp(75)) rather than from the bulk. The phototransformation of M reveals a certain heterogeneity of the pigment, which probably reflects different populations of M or its photoproduct M'. Photoconversion of the M intermediate provides a possible pathway for photoreception in halobacteria and a useful tool for studying the mechanisms of signal transduction by phoborhodopsin (sensory rhodopsin II).     

The reaction with oxygen of cytochrome oxidase (cytochrome d) in Escherichia coli K12: optical studies of intermediate species and cytochrome b oxidation at sub-zero temperatures

Optical changes in d- and b-type cytochromes, following initiation of the reaction of cytochrome oxidase d with O2, have been studied in cells and derived membrane particles from oxygen-limited cultures of Escherichia coli K12. At successively higher temperatures between -132 and -88 degrees C, the first scan after photolysis of the Co-liganded, reduced oxidase in the presence of O2 and a slow increase in absorbance at 675 to 680 nm due to an unidentified chromophore. A similar sequence occurs when a single sample is scanned repetitively at -91 degrees C. At higher temperatures, oxidation of at least two spectrally distinct cytochromes b occurs. Selective photolysis of the cytochrome d-CO complex with a He-Ne laser shows that neither of these cytochromes is the CO-binding cytochrome o436. In all oxidation states examined, no absorbance in the 720 to 860 nm region was observed; it is concluded that both cytochromes d and o436 lack redox-active copper that has an environment similar to the copper(s) in mitochondrial cytochrome c oxidase. The amount of cytochrome d650 (but not the amount of reduced cytochrome o436) formed after photolysis is directly proportional to the oxygen concentration in the sample at the time of freeze trapping. The results are discussed in relation to the composition and mechanism of action of cytochrome d.     

Energy transfer in phycobilisomes from phycoerythrin to allophycocyanin

Allophycocyanin appears to be the pigment through which energy trapped by phycobiliproteins is funneled to the chloroplast lamellae. Isolated, intact phycobilisomes from Porphyridium cruentum have a maximum fluorescence emission peak at 675–680 nm when excited at 545 nm. Upon dissociation, when the energy transfer is interrupted the 675–680-nm peak declines. Excitation at 435 nm produced no significant fluorescence at this wavelength.     

Optimal concentration of ammonium ion in a minimal synthetic medium for the growth of Candida albicans

Candida albicans strain B 311-10 with and without starvation was cultivated in the minimal synthetic medium of Shepherd et al. [18], modified without biotin, aminoacids, low glucose concentration [20] and with decreasing amounts of (NH₄)₂SO₄, to determine the optimal growth requirement for this strain. All the experiments were carried out under sterile conditions at 25 °C in a thermostat with initial O.D.s (675 nm) of 0.500 and 0.100. Cell growth was generally monitored everyday for six days with a spectrophotometer by determining the absorbance of the cultures at 675 nm. All the experiments were repeated three times and a statistical analysis of the data with a probability of 99% and 1% of error was performed to confirm the validity of the results. Best growth was obtained with starved cells at an initial O.D. of 0.100 and with a 0.1 g/L concentration of (NH₄)₂SO₄. At this concentration, the growth of C. albicans B 311-10 was best between the first and the fourth day with the maximum at the third day. With (NH₄)₂SO₄ concentrations of 0.05 and 0.5 g/L, cell growth was the same.     

Spectrally resolved microscopy of GFP trafficking.

Folding and chromophore cyclization-oxidation processes of green and cyan fluorescent fusion proteins (GFP and CFP) in subcellular microenvironments of transfected C6 glioma cells were studied by multipixel spectrally resolved microscopy (SRM). Discrete time-dependent spectral transitions were characterized during protein folding and chromophore maturation in the cytosol, nucleus, mitochondria, endoplasmic reticulum (ER), and Golgi. Spectral similarity mapping of fluorophore transition phases demarcated spatio-temporal fluorescence correlation at a subcellular level. Folding stages were characterized by a transition from red-shifted spectral populations in the time interval of 7-10 hr after transfection to a fully matured fluorophore emitting typical GFP or CFP fluorescence after 10-15 hr. The nascent protein revealed an initial focal accumulation in cytosol emitting in the range of 580-680 nm. After 10 hr, mixed pixel population spectra were measured and at 15 hr GFP was visualized in the cytoplasm by its specific spectral fingerprints with maxima at 545 nm. For nucleus- and mitochondrion-targeted CFPs, the mature conformer was discovered only in its final destination, whereas intermediate steps of fluorophore synthesis (at 10 hr) were found in the cytoplasm. Enhanced fluorescence maturation was manifested only by the ER-Golgi-targeted CFP after 10 hr post transfection by spectral imaging. Moreover, only remnants of initial intermediate fluorescent pixels were localized externally to the Golgi framework at 15 hr. SRM assessed the competence of ER-Golgi to maintain efficient CFP folding in comparison to the rest of the cellular compartments.     

Stopped-flow spectrophotometric characterization of enzymic reaction intermediates in the anaerobic reduction of pig-plasma benzylamine oxidase by amine substrates.

Reduction of benzylamine oxidase by p-methoxybenzylamine under anaerobic conditions leads to biphasic absorbance changes at 470 nm. These reflect the intermediate formation of an enzyme substrate complex with spectral properties different from those of native enzyme and fully reduced enzyme. The spectrally modified enzyme-substrate complex exhibits a broad difference absorption band centered around 360 nm. The transient accumulation of this intermediate during reaction can be conveniently followed by stopped-flow techniques at wavelengths between 320 and 360 nm, where contributions from the subsequent reduction of the enzymic 470-nm chromophore are of minor significance. 2. Analogous intermediates exhibiting similar absorption spectra seem to be formed on reduction of the enzyme by benzylamine and other amine substrates which were tested. Substitution of benzylamine as the reducing substrate by [alpha, alpha-2H]benzylamine results in a decreased accumulation of the spectrally modified intermediate. This indicates that its formation is preceded by deprotonation of the alpha-carbon of the amine substrate. 3. Circular dichroism spectra of benzylamine oxidase exhibit a positive band at 360 nm, lending support to the previous conclusion that benzylamine oxidase is a pyridoxal enzyme. Formation of the spectrally modified enzyme-substrate complex then most likely reflects the prototropic shift converting an amine-pyridoxal Schiff-base obtained by rapid pre-equilibration between enzyme and substrate into an aldehyde-pyridoxamine Schiff-base.     

Selection for resistance to a nucleopolyhedrosis virus in laboratory populations of the cotton bollworm, Heliothis zea

Resistance to a nucleopolyhedrosis virus (Baculovirus heliothis) did not develop in laboratory populations of the cotton bollworm, Heliothis zea. A selection pressure of LD₅₀ to 70 was maintained throughout 20 to 25 generations of selection. No significant changes in LD₅₀, slope, or intercept of dose-mortality lines were detected. Laboratory populations under selection were as susceptible to the virus as nonselected or wild populations of H. zea. The resistance ratio (LD₅₀ of selected generation/initial generation) ranged from 0.5 to 1.2.     

PHYCOBILIPROTEIN COMPOSITION AND CHLOROPLAST STRUCTURE IN THE FRESHWATER RED ALGA COMPSOPOGON COERULEUS (RHODOPHYTA)1

Serial sections of uncorticated axial cells of Compsopogon coeruleus revealed a single interconnected parietal chloroplast. Phycobilisomes in such chloroplasts were hemidiscoidal in shape with a broad-face diameter of ca. 25–30 nm. The molar ratio of phycobiliproteins in whole cell extracts was IPE:3PC:1APC, similar to isolated phycobilisomes. Two spectrally distinct C-phycocyanin forms (A618 nm, F648 nm and A630 nm, F652 nm) were resolved in dissociated phycobilisomes along with B-phycoerythrin and allophycocyanin.     

NIR spectroscopy,mineral nitrogen analysis and soil incubations for the prediction of crop uptake of nitrogen during the growing season

To predict the amount of N taken up in above-ground plant parts during the growing season, initial mineral soil N, a soil incubation method, soil organic matter and NIR data were compared as predictors. Soil samples were taken from 15 plots cropped with winter wheat on a farm in south-western Sweden. The plots were not fertilized with N during the 1997 growing season. N contents in above-ground plant parts were measured in mid-June and in mid-August. All methods were capable of predicting the crop uptake of N reasonably well. NIR data gave at least as good predictions as the best traditional method, initial soil NO₃-N. The most important wavelengths, around 1400 and 1700 nm, and above 2000 nm, coincide with the wavelengths reported earlier to be important for the prediction of soil organic matter. However, the data suggest that other soil components influencing mineralization are also spectrally active. Since very few samples were taken, the studies need to be extended in order to be able to use the method in practice. It is recommended that further studies be instigated for the possibility of using the same NIR calibration over several years and to clarify the spatial regions that the calibrations can cover. This revised version was published online in June 2006 with corrections to the Cover Date.     

Fluorescence properties of the envelope membranes from spinach chloroplasts. Detection of protochlorophyllide

At 77 K, under excitation at 440 nm, two major fluorescence emission peaks were observed in envelope membranes from spinach chloroplasts at 636 and 680 nm. A narrow range of wavelengths around 440 nm and a wider range of wavelengths between 390 and 440 nm, respectively, were responsible for excitation of the 636 and 680 nm fluorescence emissions which, in marked contrast with thylakoid fluorescence emission, were devoid of any exciting components between 460 and 500 nm. In acetonic extract of envelope membranes, two fluorescence emission peaks were observed at 635 and 675 nm. After extraction of the acetonic solution by nonpolar solvents (petroleum ether or hexane), the 675 nm fluorescence emission was partitioned between the polar and nonpolar phases whereas the 635 nm fluorescence emission was solely recovered in the polar phase. All together, the results obtained suggest that envelope membranes contain low amounts of pigments having the absorption and fluorescence spectroscopic properties, together with the behavior in polar/nonpolar solvents, of protochlorophyllide and chlorophyllide. In addition, modulation of the level of fluorescence at 636 and 680 nm could be obtained by addition of NADPH to envelope membranes under illumination. The presence of protochlorophyllide in chloroplast envelope membranes together with its possible photoconversion into chlorophyllide could have major implication for the understanding of chlorophyll biosynthesis in mature chloroplasts.     

Light dependent oxygen uptake by the blue green alga Anacystis nidulans.

Cells of Anacystis nidulans consume oxygen when illuminated with 750 nm light. The same process occurs with 675 nm light when the photosynthetic production of oxygen has been halted by gentle heating of the cells. These reactions do not require the addition of artificial redox compounds. There seem to be two separate systems, one activated by 750 nm light, the other by 675 nm light. Polarographic action action spectra reveal that the 675 nm system utilises pigments of the photosynthetic apparatus, excluding phycocyanin. Fluorescence excitation spectra suggest that only the pigment P750 is involved in the 750 nm system. Purified P750 recombines spontaneously with extracted pigment-free cell fragments. After recombination the P750 has the same spectroscopic properties as the pigment in vivo.     

Dominance of a 675?nm chlorophyll(ide) form upon selective 632.8 or 654?nm laser illumination after partial protochlorophyllide phototransformation

The phototransformation pathways of protochlorophyllide forms were studied in 8?C14-day-old leaves of dark-germinated wheat (Triticum aestivum L.) using white, 632.8?nm He?CNe laser and 654?nm laser diode light. The photon flux density (PFD) values (0.75?C360???mol photons?m^?2?s^?1), the illumination periods (20?ms?C10?s) and the temperature of the leaves (between ?60?°C and room temperature) were varied. The 77?K fluorescence spectra of partially phototransformed leaves showed gradual accumulation or even the dominance of the 675?nm emitting chlorophyllide or chlorophyll form at room temperature with 632.8?nm of PFD less than 200???mol photons?m^?2?s^?1 or with 654?nm of low PFD (7.5???mol photons?m^?2?s^?1) up to 1?s. Longer wavelength (685 or 690?nm) emitting chlorophyllide forms appeared at illuminations under ?25?°C with both laser lights or at room temperature when the PFD values were higher or the illumination period was longer than above. We concluded that the formation of the 675?nm emitting chlorophyllide form does not indicate the direct photoactivity of the 633?nm emitting protochlorophyllide form; it can derive from 644 and 657?nm forms via instantaneous disaggregation of the newly-produced chlorophyllide complexes. The disaggregation is strongly influenced by the molecular environment and the localization of the complex.