Branching out: a remarkable new branching syllid (Annelida) living in a Petrosia sponge (Porifera: Demospongiae)

We describe the morphology and biology of a previously unknown form of branching annelid, Ramisyllis multicaudata gen. et sp. nov. , an endosymbiont of shallow‐water marine sponges (Petrosia sp., Demospongiae) in northern Australia. It belongs to the polychaete family Syllidae, as does Syllis ramosa McIntosh, 1879, the only other named branching annelid, which was collected from deep‐water hexactinellid sponges during the 1875 Challenger expedition. It differs from S. ramosa in parapodial and chaetal morphology. Ramisyllis multicaudata gen. et sp. nov. has segments of several types, including specialized posterior segments on the emergent portions of the worm, and simplified elongate segments that bridge larger cavities in the sponge interior. Aside from the obvious branching form, the new annelid is similar to Parahaplosyllis, differing from it in lacking pharyngeal armature and in the details of the parapodial chaetae and dorsal cirri. Molecular evidence from 16S and 18S rDNA supports a sister‐group relationship with Parahaplosyllis, with both being sister to Trypanosyllis and Eurysyllis. The phylogenetic position of R. multicaudata gen. et sp. nov. indicates that branching has evolved independently in Ramisyllis gen. nov. and Syllis. This is supported by differences in the branching process between the two taxa: in S. ramosa branching is initiated by segment addition at the parapodium, whereas in R. multicaudata gen. et sp. nov. segments are added from a region between parapodia. A model for branching in R. multicaudata gen. et sp. nov. is proposed and possible developmental processes underlying branching in Annelida, and body symmetry comparisons with other invertebrates, are also discussed. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 481–497.     

Molecular phylogeny of Abyssocladia (Cladorhizidae: Poecilosclerida) and Phelloderma (Phellodermidae: Poecilosclerida) suggests a diversification of chelae microscleres in cladorhizid sponges

Vargas, S., Erpenbeck, D., Göcke, C., Hall, K. A., Hooper, J. N. A., Janussen, D. & Wörheide, G. (2012) Molecular phylogeny of Abyssocladia (Cladorhizidae: Poecilosclerida) and Phelloderma (Phellodermidae: Poecilosclerida) suggests a diversification of chelae microscleres in cladorhizid sponges. —Zoologica Scripta, 42, 106–116. The taxonomic placement of Abyssocladia Lévi, 1964 (Poecilosclerida) is controversial, having been assigned at various times to three different families (Mycalidae, Cladorhizidae and Phellodermidae) in two different suborders (Mycalina and Myxillina, respectively), since its inception in 1964. It shares the general body plan with the carnivorous sponge family Cladorhizidae (Mycalina), including the lack of an aquiferous system. Nevertheless, it also has chela spicules apparently identical to those in Phelloderma Ridley & Dendy 1886 (Phellodermidae, Myxillina). The ongoing debate on the position of Abyssocladia ultimately reduces to a discussion on the use of chelae morphology to infer phylogenetic relationships within Poecilosclerida. Here, we infer the phylogenetic relationships of the genera Phelloderma and Abyssocladia using two independent molecular markers (28S rDNA and COI), showing that Abyssocladia is not closely related to Phelloderma and belongs in Cladorhizidae. We suggest that despite their complexity, chelae morphology can evolve independently in different poecilosclerid lineages and as such might be potentially misleading as indicator of the phylogenetic history of the group. We also provide the first phylogenetic analysis of the carnivorous sponge family Cladorhizidae and give first insights into the evolution of this feeding mode in Poecilosclerida and, more generally, in Porifera.     

Revision and cladistic analysis of the jumping spider genus Onomastus (Araneae: Salticidae)

The jumping spider genus Onomastus Simon, 1900 is revised. Four new species: Onomastus indra sp. nov. , Onomastus kaharian sp. nov. , Onomastus pethiyagodai sp. nov. , and Onomastus rattotensis sp. nov. are described. Parsimony analysis of 26 morphological characters supported the monophyly of Onomastus. Lyssomanes is sister to Onomastus. Onomastus separates into two clades: the widespread South‐East Asia clade and the South Asia clade. The South Asia clade is restricted to the Sri Lanka–Western Ghats biodiversity hotspot. Species of the South Asia clade appear to be spot endemics, highly in danger of extinction because of habitat loss and climate change. Male palps are complex and species‐specific, suggesting rapid divergent evolution. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 159 , 711–745.     

Multigene phylogeny of Synura (Synurophyceae) and descriptions of four new species based on morphological and DNA evidence

We used phylogenetic analyses based on multiple gene sequences (partial nr SSU and LSU rDNA, partial pt LSU rDNA, psaA and rbcL) from 148 strains (including three outgroups) and scale ultrastructure to examine phylogenetic relationships among species of the colonial genera Synura and Tessellaria. The phylogenetic tree based on the combined dataset was congruent with ultrastructural characteristics of the scales. Synura was divided into three major clades, two including species in section Synura, and one representing section Peterseniae. One clade, consisting of seven strains of S. uvella (section Synura), diverged at the base of the genus. The second clade consisted of the remaining species belonging to the section Synura. The third clade, containing organisms in the section Peterseniae and characterized by scales possessing a keel, was monophyletic with strong support values. Based on our findings, S. uvella needs to be in a separate section from other spine-bearing species, and we therefore propose new sectional ranks; Synura, Peterseniae, Curtispinae (presence of body scales with slender spines, tubular scales and caudal scales). We further propose four new species based on phylogenetic analyses and unique scale characters: S. longitubularis sp. nov., S. sungminbooi sp. nov., S. soroconopea sp. nov. and S. lanceolata sp. nov. Lastly, we propose a new genus name, Neotessella, to replace the invalid use of the name Tessellaria.     

New species and a new combination in the <Emphasis Type="Italic">Hyphopichia</Emphasis> and <Emphasis Type="Italic">Yarrowia</Emphasis> yeast clades

Three new species of Candida and a new combination in the genus Hyphopichia are proposed from phylogenetic analysis of nucleotide divergence in domains D1/D2 of the large subunit (26S) rDNA. The new taxa and their type strains are the following: Candida bentonensis sp. nov. (NRRL YB-2364, CBS 9994), Candida hispaniensis sp. nov. (NRRL Y-5580, CBS 9996), Candida pseudorhagii sp. nov. (NRRL YB-2076, CBS 9998) and Hyphopichia heimii comb. nov. (NRRL Y-7502, CBS 6139), basionym Pichia heimii Pignal. Phylogenetic analysis placed C. pseudorhagii and H. heimii in the Hyphopichia clade whereas C. bentonensis and C. hispaniensis are members of the Yarrowia clade.     

Descriptions and phylogenetic relationships of a new genus and two new species of Oligo‐Miocene cormorants (Aves: Phalacrocoracidae) from Australia

Tertiary cormorant fossils (Aves: Phalacrocoracidae) from Late Oligocene deposits in Australia are described. They derive from the Late Oligocene – Early Miocene (26–24 Mya) Etadunna and Namba Formations in the Lake Eyre and Lake Frome Basins, South Australia, respectively. A new genus, Nambashag gen. nov. , with two new species ( Nambashag billerooensis sp. nov. , 30 specimens; Nambashag microglaucus sp. nov. , 14 specimens), has been established. Phylogenetic analyses based on 113 morphological and two integumentary characters indicated that Nambashag is the sister taxon to the Early Miocene Nectornis miocaenus of Europe and all extant phalacrocoracids. As Nambashag, Nectornis, and extant phalacrocoracids constitute a strongly supported clade sister to Anhinga species, the fossil taxa have been referred to Phalacrocoracidae. Sulids and Fregata were successive sister taxa to the Phalacrocoracoidea, i.e. phalacrocoracids + Anhinga. As phalacrocoracids lived in both Europe and Australia during the Late Oligocene and no older phalacrocoracid taxa are known, the biogeographical origin of cormorants remains unanswered. The phylogenetic relationships of extant taxa were not wholly resolved, but contrary to previous morphological analyses, considerable concordance was found with relationships recovered by recent molecular analyses. Microcarbo is sister to all other extant phalacrocoracids, and all Leucocarbo species form a well‐supported clade. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 277–314.     

Morphology and molecular phylogeny of coccoid green algae Coelastrella sensu lato (Scenedesmaceae,Sphaeropeales), including the description of three new species and two new varieties

The genus Coelastrella was established by Chodat (Bull. Soc. Bot. Geneve, 13 [1922] 66), and was characterized as being unicellular or in few‐celled aggregations with many longitudinal ribs on the cell wall. Many species of this genus showed strong ability to accumulate carotenoids and oils, so they have recently attracted much attention from researchers due to its potential applicability in the energy and food industries. In this study, a total of 23 strains of Coelastrella were sampled from China, and three new species and two new varieties were described: C. thermophila sp. nov., C. yingshanensis sp. nov., C. tenuitheca sp. nov., C. thermophila var. globulina var. nov., C. rubescens var. oocystiformis var. nov. Besides 18S rDNA and ITS2 sequences, we have newly sequenced the tufA gene marker for this taxon. Phylogenetic analysis combined with morphological studies revealed four morphotypes within the Coelastrella sensu lato clade, which contained the morphotype of original Coelastrella, original Scotiellopsis, Asterarcys, and morphotype of C. vacuolata and C. tenuitheca sp. nov. The relationships between morphological differences and phylogenic diversity based on different markers were discussed. Our results support that 18S rDNA was too conserved to be used a species‐specific or even a genus‐specific marker in this clade. The topology of tufA gene‐based phylogenetic tree had a better match with the morphological findings.     

Phylogeny of the spider genus Ixchela Huber, 2000 (Araneae: Pholcidae) based on morphological and molecular evidence (CO1 and 16S), with a hypothesized diversification in the Pleistocene

The genus Ixchela Huber is composed of 20 species distributed from north‐eastern Mexico to Central America, including the five new species described here from Mexico: I xchela azteca sp. nov. , I xchela jalisco sp. nov. , I xchela mendozai sp. nov. , I xchela purepecha sp. nov. and I xchela tlayuda sp. nov. We test the monophyly and investigate the phylogenetic relationships among species of the genus Ixchela using morphological and molecular data. Parsimony (PA) analysis of 24 taxa and 40 morphological characters with equal and implied weights supported the monophyly of Ixchela with eight morphological synapomorphies. The PA analyses with equal and implied weights, and separate Bayesian inference (BI) analyses for the CO1 gene (506 characters), concatenated gene fragments CO1 + 16S (885 characters), morphology + CO1 (546 characters) and the combined evidence data set (morphology + CO1 + 16S) (925 characters) support the monophyly of Ixchela. Our preferred topology shows two large clades; clade 1 has a natural distribution in the Mesoamerican biotic component, whereas clade 2 predominates in the Mexican Montane biotic component. The genus Ixchela diverged in the late Miocene, and the divergence between the internal clades in the genus occurred in the late Pliocene; by contrast, most of the speciation events seem to have occurred mainly during the Pleistocene, where climatic changes brought on by repeated glaciations played an important role in the diversification of the genus. © 2015 The Linnean Society of London     

A species complex within the isopod genus Haploniscus (Crustacea: Malacostraca: Peracarida) from the Southern Ocean deep sea: a morphological and molecular approach

Seven new species of the genus Haploniscus from the deep Scotia and Weddell Seas are presented, combining morphological and molecular data (mitochondrial 16S rDNA and nuclear 18S rDNA). Haploniscus cassilatus sp. nov. , H. cucullus sp. nov. , H. weddellensis sp. nov. , H. procerus sp. nov. and H. kyrbasia sp. nov. are characterized by a prominent rostral process, the size and shape of which vary among species. The rostrum of H. microkorys sp. nov. is distinctly smaller than that of the former species, while H. nudifrons sp. nov. does not possess a rostrum. The status of the latter as separate species is obvious, owing to the stronger morphological differences. DNA was sequenced from three of the other five species. Genetic distances together with the more subtle morphological variation justify the erection of separate species. Overall morphological variations between these species are small yet noticeable and include, among others, the rostrum, the shape of the pleotelson and setation of pereopods. Our molecular data sets reveal detailed phylogenetic insights within the Haploniscus cucullus complex, supporting the monophyly of all species. We found p -distances of at least 0.0732 (16S rDNA) and 0.0140 (complete 18S rDNA) between pairs of species and show that both genes can be used as a marker for DNA taxonomy.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 152 , 655–706.     

Morphology and molecular phylogeny of three new oligotrich ciliates (Protozoa,Ciliophora) from the South China Sea

The present paper documents the morphology and systematic positions of three new oligotrich ciliates, P arallelostrombidium obesum sp. nov. , P arallelostrombidium ellipticum sp. nov. , and S trombidium tropicum sp. nov. , which were sampled from habitats with different salinities in southern China. P arallelostrombidium obesum sp. nov. is characterized by a fat body and the posterior portions of the girdle and ventral kineties extending transversely on the dorsal side. P arallelostrombidium ellipticum sp. nov. is recognizable by the anterior ends of the girdle and ventral kineties being close to each other and the posterior ends of the girdle and ventral kineties intersecting on the dorsal side. S trombidium tropicum sp. nov. is distinguished by a ventrally opened girdle kinety that is slightly spiralled with the right end shifted posteriad. Small subunit rRNA gene trees show that P . obesum sp. nov. and P . ellipticum sp. nov. fall into a mixed group composed of Parallelostrombidium and some Novistrombidium species, and that S . tropicum sp. nov. branches at the base of the clade containing non‐Strombidium species. The relationships of Parallelostrombidium species and that of Strombidium species are both not resolved considering their low support values in our phylogenetic analysis. © 2015 The Linnean Society of London     

The lace web spiders (Araneae,Phyxelididae) of Madagascar: phylogeny,biogeography and taxonomy

We briefly review the potential history of Madagascar as either a Darwinian or a Wallacean island, summarize the phylogenetic evidence regarding the biogeography of Madagascar spiders, examine the dispersal history of the Madagascar Phyxelididae, and monograph the family in Madagascar. Molecular phylogenetic analyses for 32 Malagasy phyxelidid exemplars, nine confamilial outgroup taxa, and seven other more distant outgroups are performed for three nuclear markers and one mitochondrial genetic marker (28S, 18S, H3 and COI) utilizing Bayesian, maximum‐likelihood and parsimony methods. These analyses suggest that there are 14 species of Phyxelididae that may be recognized from Madagascar, that these may be divided into three genera, and that the Malagasy phyxelidids form a monophyletic group, probably resulting from a single invasion of the island by an ancestor from Africa. Two new genera, ten new species, and two new combinations are proposed: Manampoka atsimo gen. nov., sp. nov. ; Rahavavy gen. nov. , including R. ida sp. nov. and R. fanivelona (Griswold, 1990) comb. nov. and R. malagasyana (Griswold, 1990) comb. nov. ; and Ambohima andrefana sp. nov. , A. antsinanana sp. nov. , A. avaratra sp. nov. , A. maizina sp. nov. , A. ranohira sp. nov. , A. vato sp. nov. , A. zandry sp. nov. and A. zoky sp. nov. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 728–810.     

An extraordinary new genus of spiders from Western Australia with an expanded hypothesis on the phylogeny of Tetragnathidae (Araneae)

We describe Pinkfloydia Hormiga & Dimitrov gen. nov. , a new genus of tetragnathid spiders from Western Australia and study its phylogenetic placement. The taxon sampling from our previous cladistic studies was expanded, with the inclusion of representatives of additional tetragnathid genera and outgroup taxa. Sequences from six genetic markers, 12S, 16S, 18S, 28S, cytochrome c oxidase subunit 1, and histone 3, along with morphological and behavioural data were used to infer tetragnathid relationships. These data were analysed using parsimony (under both static homology and dynamic optimization) and Bayesian methods. Our results indicate that Pinkfloydia belongs to the ‘Nanometa’ clade. We also propose a revised set of synapomorphies to define this lineage. Based on the new evidence presented here we propose a revised hypothesis for the intrafamilial relationships of Tetragnathidae and show that Mimetidae is most likely the sister group of Tetragnathidae. The single species in this genus so far, Pinkfloydia harveii Dimitrov& Hormiga sp. nov. , is described in detail and its web architecture documented and illustrated. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 161 , 735–768.     

An evolutional special case in the lower Orthorrhapha: some attractive fossil flies from the Middle Jurassic of China (Insecta: Diptera: Brachycera)

More than ten extinct Lower Brachycera families have been discovered throughout the world. These fossil records are of great significance in piecing together jigsaw puzzles of evolution for the Order Diptera. However, the distinct systematic relationships of the Diptera, one of the four largest orders, remain obscure. Herein, we erect a new family to enhance our systematic understanding of the Diptera. The Uranorhagionidae fam. nov. is a bewildering new extinct family comprising two new genera, Uranorhagio gen. nov. and Strenorhagio gen. nov. , and five new species, Uranorhagio daohugouensis sp. nov. , Strenorhagio deviatus sp. nov. , Strenorhagio grimaldi sp. nov. , Strenorhagio asymmetricus sp. nov. , and Strenorhagio conjugovenius sp. nov. , from the Middle Jurassic of China. Members of the new family are moderate to large in size and robust in shape. This family possesses a peculiar shape of vein R₂₊₃, the basal part of which is strongly fornical and nearly geniculate, and has the crossvein r–m at variable position. Furthermore, the Uranorhagionidae fam. nov. exhibits a mixture of distinct characters of two families in two disparate superfamilies, i.e. Rhagionemestriidae (Nemestrinoidea) and Rhagionidae (Tabanoidea), thus suggesting that this family might be in an inclusive position in dipteran phylogeny. We tentatively place this new family as a member of Tabanoidea, pending the discovery of more fossil specimens and further study. The comparison between the new family and other relative families will be discussed. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 158 , 563–572.     

A STUDY ON CHINESE SPECIES OF AULOGYMNUS FORSTER (HYMENOPTERA: EULOPHIDAE)*

Abstract This paper treats Chinese species of Aulogymnus Förster which is newly recorded from China. Four new species, A. elevatus sp. nov., A. hyalopterus sp. nov., A. insculptus sp. nov., and A. longicalcar sp. nov. are described. All type specimens are deposited in the Zoological Museum, Institute of Zoology. Chinese Academy of Sciences.     

Bullera begoniae sp. nov. and Bullera setariae sp. nov., two new species of ballistoconidium-forming yeasts in the Bullera variabilis (Bulleribasidium) cluster isolated from plants in Taiwan

Two strains of xylose-containing and Q-10-having ballistoconidiogenous yeasts isolated from plant leaves collected in Taiwan were found to represent two new species of the genus Bullera. In the phylogenetic trees based on the sequence analysis of 18S rDNA and D1/D2 domain of 26S rDNA, these species are located in the Bullera variabilis (Bulleribasidum) cluster in Hymenomycetes. They are described as Bullera begoniae sp. nov. and Bullera setariae sp. nov., respectively.     

Systematic revision of the arboreal snail Satsuma albida species complex (Mollusca: Camaenidae) with descriptions of 14 new species from Taiwan

The taxonomy of the endemic arboreal snail Satsuma albida species complex from Taiwan was unclear due to the animals' highly similar morphology, and their nocturnal and strict arboreal behaviour, leading to difficulties in collecting living specimens. This article is the first comprehensive comparative study on the systematics and taxonomy of this species complex using external morphology, anatomy of the reproductive system and molecular phylogeny. Consequently, two subspecies of S. albida are raised to species status, namely S. insignis and S. mollicula. Fourteen new species are also described. Fourteen of the 17 species showed polymorphism in banding pattern amongst populations and other species retained the whitish unity as seen in S. albida. Distributions of almost all taxa are geographically limited, with the exception of S. polymorpha sp. nov . The phylogeny of these species was reconstructed using 20 morphological characters and molecular data from the partial sequences of mtDNA CO1 and 16S rRNA genes, and the complete ITS2 sequence. The molecular phylogeny revealed three subclades (west, east and polymorpha clade) and revealed that these snails are monophyletic, originating from a ground‐dwelling ancestor. © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society, 2008, 154 , 437–493.