Phylogenetics and morphological evolution of coral‐dwelling barnacles (Balanomorpha: Pyrgomatidae)

Pyrgomatid barnacles are a family of balanomorphs uniquely adapted to symbiosis on corals. The evolution of the coral‐dwelling barnacles is explored using a multi‐gene phylogeny (COI, 16S, 12S, 18S, and H3) and phenotypic trait‐mapping. We found that the hydrocoral associate Wanella should be excluded, while some archaeobalanids in the genus Armatobalanus should be included in the Pyrgomatidae. Three well supported clades were recovered: clade I is the largest group and is exclusively Indo‐West Pacific, clade II contains two plesiomorphic Indo‐West Pacific genera, while clade III is comprised of East and West Atlantic taxa. Some genera did not form reciprocally monophyletic groups, while the genus Trevathana was found to be paraphyletic and to include members of three other apomorphic genera/tribes. The highly unusual coral‐parasitic hoekiines appear to be of recent origin and rapidly evolving from Trevathana sensu lato. Pyrgomatids include six‐, four‐, and one‐plated forms, and exhibit convergent evolutionary tendencies towards skeletal reduction and fusion, loss of cirral armature, and increased host specificity. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 162–179.     

Checklist of the Caesalpinioideae (Leguminosae) of Equatorial Guinea (Annobón, Bioko and Río Muni)

This study provides a checklist of the Caesalpinioideae (Leguminosae) present in Equatorial Guinea, comprising 52 genera and 124 taxa. Seven species are known from Annobón, 33 from Bioko and 109 from Río Muni. The best represented genus is Senna with eight species. In addition, bibliographic references for Caesalpinioideae (Leguminosae) from Equatorial Guinea have been gathered and checked. Fourteen species are included based on literature records, because their distribution ranges suggest they may occur in Equatorial Guinea, 11 introduced species could be naturalized, and 45 taxa are recorded for the first time from the country. This represents an increase of over 35% in the floristic knowledge of Caesalpinioideae from Equatorial Guinea. A statistical summary is presented at the end of the checklist.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 151 , 541–562.     

Phylogenetic revision of the Hippasterinae (Goniasteridae; Asteroidea): systematics of deep sea corallivores,including one new genus and three new species

The Hippasterinae is a subfamily within the Goniasteridae, consisting of five genera and 26 species, which occur in cold‐water settings ranging from subtidal to abyssal depths. All known genera were included in a cladistic analysis resulting in two most parsimonious trees, supporting the Hippasterinae as monophyletic. Our review supports Sthenaster emmae gen. et sp. nov. as a new genus and species from the tropical Atlantic and two new Evoplosoma species, Evoplosoma claguei sp. nov. and Evoplosoma voratus sp. nov. from seamounts in the North Pacific. Hippasteria caribaea is reassigned to the genus Gilbertaster, which previously contained a single Pacific species. Our analysis supports Evoplosoma as a derived deep water lineage relative to its continental‐shelf, shallow water sister taxa. The genus Hippasteria contains approximately 15 widely distributed, but similar‐looking species, which occur in the northern and southern hemispheres. Except for Gilbertaster, at least one species in each genus has been observed or is inferred to prey on deep‐sea corals, suggesting that this lineage is important to the conservation of deep‐sea coral habitats. The Hippasterinae shares several morphological similarities with Circeaster and Calliaster, suggesting that they may be related. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 266–301.     

Systematic review of a new orb‐weaving spider genus (Araneae: Araneidae), with special reference to the Australasian‐Pacific and South‐East Asian fauna

The Australasian‐Pacific and South‐East Asian species of the new orb‐weaving spider genus Plebs with Plebs eburnus (Keyserling, 1886) as type species are revised. Following this study, Plebs includes a total of 22 species of which seven are here described new. Seven species are found in Australia, two in the Pacific region (New Caledonia, Vanuatu), and two in South‐East Asia (Papua New Guinea, The Philippines). Eleven Asian species are transferred to the new genus. Plebs represent comparatively small orb‐weaving spiders of c. 1.2–15.0 mm body length with a slightly elongated abdomen and humeral (shoulder) humps. Males of most species have two to three stout setae on the ventral side of their fourth coxae. Male pedipalps are characterized by the presence of a single macroseta on the patella, the presence of a paramedian apophysis as basal extension of the conductor, and an apical tegular protrusion. The female epigyne has a scape that is generally much longer than wide. It does not have a terminal pocket and is frequently broken off in a number of species. A phylogenetic analysis of 15 species of Plebs (those for which both sexes are known), 13 Australian/Pacific orb‐weaving spider species representing the most commonly collected clades with paramedian apophysis, three species of Nearctic Eriophora Simon, 1864, and Araneus diadematus Clerck, 1758, as outgroup, identified a single synapomorphy of Plebs based on 35 morphological and three behavioural characters: a distinct, inverted U‐shaped light pattern on the ventral side of the abdomen with two additional white spots anterolateral to the spinnerets. This analysis recovered a monophyletic clade of all Asian Plebs, suggesting a single colonization event of the genus that putatively originated in Australia. Most Plebs species appear to be active during the day. They build a regular orb‐web with vertical stabilimentum in grass and low shrubs. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 279–341.     

Morphological and molecular description of new species of squat lobster (Crustacea: Decapoda: Galatheidae) from the Solomon and Fiji Islands (South‐West Pacific)

The family Galatheidae is among the most diverse families of anomuran decapod crustaceans, and the South‐West Pacific is a biodiversity hot spot for these squat lobsters. Attempts to clarify the taxonomic and evolutionary relationships of the Galatheidae on the basis of morphological and molecular data have revealed the existence of several cryptic species, differentiated only by subtle morphological characters. Despite these efforts, however, relationships among genera are poorly understood, and the family is in need of a detailed systematic review. In this study, we assess material collected in different surveys conducted in the Solomon Islands, as well as comparative material from the Fiji Islands, by examining both the morphology of the specimens and two mitochondrial markers (cytochrome oxidase subunit I, COI, and 16S rRNA). These two sources of data revealed the existence of eight new species of squat lobster, four of which were ascribed to the genus Munida, two to the genus Paramunida, one to the genus Plesionida, and the last species was ascribed to the genus Agononida. These eight species are described along with phylogenetic relationships at the genus level. Our findings support the taxonomic status of the new species, yet the phylogenetic relationships are not yet fully resolved. Further molecular analysis of a larger data set of species, and more conserved genes, will help clarify the systematics of this group. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 465–493.     

The Papilionoideae (Leguminosae) of Equatorial Guinea (Annobón, Bioko and Río Muni)

This study provides a checklist of the Papilionoideae (Leguminosae) present in Equatorial Guinea, comprising 55 genera and 157 taxa. Twenty-six species are known from Annobón, 91 from Bioko and 110 from Río Muni. The best represented genus is Millettia with 14 species. Bibliographic references for Papilionoideae (Leguminosae) from Equatorial Guinea have been gathered and checked. Seventeen species are included, because published data on their distribution range suggests they may occur in Equatorial Guinea; 15 species are introduced and likely already naturalized; and 48 taxa are recorded for the first time from the country. This represents an increase of over 30% in the floristic knowledge of Papilionoideae from Equatorial Guinea. Three species only known from their types may be considered as endemic to Equatorial Guinea: Amphimas tessmannii, Leptoderris oxytropis and Millettia mildbraedii.     

Checklist of Commelinaceae of Equatorial Guinea (Annobón,Bioko and Río Muni)

A checklist of Commelinaceae of Equatorial Guinea, comprising 46 taxa in 12 genera, is presented. The best represented genus is Palisota, with 11 species. Bibliographical references for Commelinaceae from Equatorial Guinea have been gathered and checked. Eleven species of Commelinaceae are recorded for the first time in the country. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 159 , 106–122.     

Molecular phylogenetics of Uvaria (Annonaceae): relationships with Balonga,Dasoclema and Australian species of Melodorum

An extended molecular phylogenetic analysis of Uvaria (Annonaceae) is presented, using maximum parsimony, maximum likelihood and Bayesian methods, based on sequences of four plastid DNA regions (matK, psbA‐trnH spacer, rbcL and trnL‐F). The additional taxa include the monotypic West African genus Balonga, the monotypic South‐East Asian genus Dasoclema and seven Australian representatives of the genus Melodorum. The results indicate that all of these taxa are nested within a well‐supported clade otherwise consisting of Uvaria species, indicating that their taxonomic treatment needs to be reassessed. The distinguishing morphological characteristics of the taxa are re‐evaluated and interpreted as specialized adaptations of the basic Uvaria structure. The genus Uvaria is accordingly extended following the transfer of these species, necessitating six new nomenclatural combinations and two replacement names. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2010, 163 , 33–43.     

Review of Erigonine spider genera in the Neotropics (Araneae: Linyphiidae,Erigoninae)

The Neotropical genera of the linyphiid spider subfamily Erigoninae are revised at the genus level. Emphasis was placed on genera endemic to the Neotropics and species with dubious relationships to their nominal genera, especially species from the older literature. This work recognizes 50 genera in the Neotropics, of which 39 genera are strictly endemic to the Neotropics, three are represented outside the Neotropics by one species, and eight genera have significant representation both in and beyond the Neotropics. Three additional genera, Ceraticelus Simon, 1884, Idionella Banks, 1893, and Eulaira Chamberlin & Ivie, 1933, are represented in northern Mexico and/or the West Indies, but are best classified as having a Nearctic or Holarctic distribution. Species previously placed in the typically northern hemisphere genera Gongylidiellum Simon, 1884, Leptorhoptrum Kulczynski, 1894, Macrargus Dahl, 1886, Minyriolus Simon, 1884, Oedothorax Bertkau, 1883, Phanetta Keyserling, 1886, and Tmeticus Menge, 1868 are found to be misplaced or nomina dubia; two genera endemic to the Neotropics, Clitistes Simon, 1902 and Zilephus Simon, 1902 are nomina dubia. The genus Beauchenia Usher, 1983 is an erigonine, not a mynoglenine; there are no known representatives of the Mynogleninae in the Neotropics. One hundred and forty new combinations are established; 19 genera are synonymized including Micromaso Tambs‐Lyche, 1954, revalidation rejected; 34 species are synonymized. The following new genera are established: Gigapassus gen. nov. , Intecymbium gen. nov. , Moyosi gen. nov. , Orfeo gen. nov. and Toltecaria gen. nov. Malkinella Millidge, 1991 and Valdiviella Millidge, 1985 are preoccupied; Malkinola nom. nov. and Valdiviola nom. nov. are established as replacement names. The following new species are described: Asemostera daedalus sp. nov. , Asemostera enkidu sp. nov. , Asemostera janetae sp. nov. , Fissiscapus attercop sp. nov. , Gonatoraphis lysistrata sp. nov. , Gravipalpus standifer sp. nov. , Microplanus odin sp. nov. , Moyosi chumota sp. nov. , Myrmecomelix leucippus sp. nov. , Neomaso damocles sp. nov. , Notiomaso exonychus sp. nov. , Paraletes pogo sp. nov. , Psilocymbium acanthodes sp. nov. , Smermisia holdridgi sp. nov. and Smermisia parvoris sp. nov. The following species remain misplaced in inappropriate genera: Erigone fellita Keyserling, 1886, Erigone zabluta Keyserling, 1886, and Oedothorax fuegianus (Simon, 1902). For 23 species, type specimens could not be located and the species could not be unambiguously identified; the type of Macrargus pacificus Berland, 1924 could not be located, but it is transferred to Laminacauda Millidge, 1985. The female of Onychembolus subalpinus Millidge, 1985 described by Millidge in 1991 is mismatched; this female is Notiomaso exonychus sp. nov. ; the true female of Onychembolus subalpinus was described as both Neomaso bidentatus Millidge, 1991 syn. nov. and Neomaso tridentatus Millidge, 1991 syn. nov. The male and female of Asemonetes[now Asemostera]arcana (Millidge, 1991) are not conspecific; a male thought to be conspecific with the female of A. arcana is newly described; the true female of A. arcana is unknown. The transfer of Emenista dentichelis Berland, 1913 to Laminacauda comb. nov. renders Laminacauda dentichelis Millidge, 1991 a junior homonym; the replacement name Laminacauda baerti nom. nov. is provided for Laminacauda dentichelis Millidge. The following species were erroneously placed in erigonine genera: Oedothorax bisignatus Mello‐Leitão, 1945 is synonymized with Theridion calcynatum Holmberg, 1876 syn. nov. (Theridiidae); Liger incomta O. Pickard‐Cambridge, 1896 is transferred to Theridion Walckenaer, 1805 (Theridiidae) [Theridion incomtum comb. nov. ]; Erigone ectrapela Keyserling, 1886 is transferred to Dictyna Sundevall, 1833 (Dictynidae) [Dictyna ectrapela comb. nov. ]; Erigone peruana Keyserling, 1886 is transferred to Thymoites Keyserling, 1884 (Theridiidae) [Thymoites peruanus comb. nov. ]; Adelonetria dubiosa Millidge, 1991 is not a linyphiid and will be dealt with elsewhere. Lomaita darlingtoni Bryant, 1948 is confirmed as a linyphiid, not a mysmenid. © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society, 2007, 149 (Suppl. 1), 1–263.     

Molecular and morphological evidence for a Pleistocene radiation of laminate‐toothed rats (Otomys: Rodentia) across a volcanic archipelago in equatorial Africa

West African Mountains of the Cameroon Volcanic Line harbour two montane‐endemic species of laminated‐toothed rats (Otomys), which represent the most westerly occurrence of the genus. We explore here through mtDNA sequencing and cranial morphometrics the taxonomic status and phylogenetic relationships of O. burtoni (Mt Cameroon) and O. occidentalis (Mts Oku and Gotel). We conclude that both species are valid and can be discriminated by molecular data, as well as quantitative and qualitative cranial characters. From molecular data, O. occidentalis and O. burtoni are closest neighbours (p‐distance = 7.5–8.5%) and weakly associated sister species (suggesting a single West African radiation) and both are sister clades to a well supported clade of central, East and northeast African members of the O. typus s.l. and O. tropicalis s.l. species complexes from mountain ranges comprising the East African ‘Montane Circle’ and Ethiopian Highlands. Re‐evaluation of the evolutionary origins of the allopatric Otomys populations in equatorial Africa is undertaken in light of fossil evidence of a southern African origin of the genus. We can conclude that Otomys reached the Cameroon Volcanic Line via corridors of temperate grasslands during the Late Pliocene. Our data support the hypothesis that, following major peripatric speciation events at around 2.3 to 2.03 Ma (from East Africa into West and North Africa respectively), further speciation occurred across neighbouring mountain ranges in West, Central‐East and North‐East Africa. Estimated molecular dates of speciation events in Otomys reveal close congruence with well‐constrained geochronological estimates, pertinently the uplift of the Albertine Rift in the Early Pleistocene. These regional analyses reveal how peripatric speciation events established narrow‐range endemics of Otomys on principal stratovolcanoes across the East African plateau and Cameroon. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 320–344.     

Ultraconserved elements put the final nail in the coffin of traditional use of the genus Meliphaga (Aves: Meliphagidae)

Molecular systematics is bringing taxonomy into the 21st Century by updating our nomenclature to reflect phylogenetic relationships of taxa. This transformation is evidenced by massive changes in avian taxonomy, ranging from ordinal to subspecies changes. In this study, we employ target capture of ultraconserved elements to resolve genus‐level systematics of a problematic group of honeyeaters (Aves: Meliphagidae). With near complete species‐level taxon sampling of the Australo‐Papuan species within the traditionally recognized Meliphaga and Oreornis, we investigate generic limits using a genomic dataset. Likelihood and species tree methods confirm two clades within this group and found the New Guinea endemic Oreornis chrysogenys embedded within one of these clades. Our study supports earlier recommendations that Meliphaga Lewin, 1808 should be restricted to three species, M. aruensis, M. lewinii and M. notata. We make a case for recognizing three genera in the remaining species, Oreornis van Oort, 1910, Microptilotis Mathews, 1912 and Territornis Mathews, 1924.     

A reconsideration of the Lower Guinean species of Sericanthe (Rubiaceae,Coffeeae), with four new species from Cameroon and Gabon

The genus Sericanthe was established and its species were revised 30 years ago by one of the authors. Intensive recent botanical collecting in Lower Guinea (mainly southern Cameroon, Equatorial Guinea and Gabon) has made a reconsideration of species in this area necessary. Revision of the newly collected Lower Guinean herbarium specimens of Sericanthe (twice as many as were available at the time of the first revision) has brought four new species to light, namely S. gabonensis and S. mpassa from Gabon, S. lowryana from Cameroon and S. rabia from Cameroon and Gabon. Distributional data are much augmented, and distributional maps of all species from the area are provided. Four species were reported to be newly recorded for at least one country. The occurrence of the novelties in the main diversity centre of the genus is discussed in the context of the chorology of the entire genus Sericanthe. A first estimation of the conservation status for the new species is given. A synopsis of the genus Sericanthe in Lower Guinea with a taxonomic key is provided. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 169 , 530–554.     

Molecular and morphometric variation in two sibling species of the genus Praomys (Rodentia: Muridae): implications for biogeography

The rodent genus Praomys is widely distributed in the African tropics. The species are cryptic, rendering the species taxonomy unclear. There are differences of opinion concerning the specific status of Praomys misonnei and Praomys tullbergi, and their geographical distribution. We sequenced the cytochrome b and/or the 16S gene of 221 specimens from 12 countries in order to evaluate the genetic variability within these two species, and to precisely determine their geographical distribution. Morphological and morphometrical analyses on the sequenced specimens were also performed to find criteria useful for the identification of museum specimens. Our results confirm that P. misonnei and P. tullbergi are two valid species that can be separated by molecular data. However, no single discrete morphological character or simple metric measurement can be used to discriminate them. The percentage of misclassified individuals in multivariate discriminant analysis is relatively high (10%). The two species have allopatric distributions: P. tullbergi occurs in West Africa, from eastern Guinea to western Ghana, and P. misonnei is widely distributed from eastern Ghana to western Kenya. Within P. misonnei we identified three or four major geographical clades: a West Central African clade, an East African clade, a Nigerian clade, and a possible West African clade. Within P. misonnei, high geographical morphometrical variability was also identified. The role of both rivers and Pleistocene forest refugia in promoting speciation within the genus Praomys is discussed. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 397–419.     

Revision and phylogenetic assessment of the rove beetle genus Pseudohesperus Hayashi,with broad reference to the subtribe Philonthina (Coleoptera: Staphylinidae: Staphylinini)

This paper studies the phylogeny of the rove beetle subtribe Philonthina, to test its hypothetical monophyly and to unravel the evolutionary relationships of the subtribe and its included genus‐level taxa, with emphasis on the genus Pseudohesperus and its close‐allied relatives. The phylogenetic analyses are based on 105 adult morphological characters and 66 terminal taxa, i.e., all six members of Pseudohesperus, 51 species to represent 29 other genera of the subtribe Philonthina, seven species to represent the other six subtribes of Staphylinini, one species of the tribes Arrowinini, and one of the Platyprosopini. According to the phylogenetic results obtained, the genus Erichsonius should move out from the hitherto‐defined subtribe Philonthina and thus the monophyly of this taxon is challenged. The phylogenetic tree suggests that the genera Hesperus and Belonuchus might not be monophyletic, but the monophyly of Pseudohesperus and the sister relationship between it and Bisnius are well supported. The species‐level phylogenetic relationships of the genus Pseudohesperus reveal a clear pattern of species diversification that can be correlated well with the species' zoogeographical patterns. The paper also revises the taxonomy of Pseudohesperus and describes five new species from China: Pseudohesperus luteus Li & Zhou sp. nov. , Pseudohesperus pedatiformis Li & Zhou sp. nov. , Pseudohesperus tripartitus Li & Zhou sp. nov. , Pseudohesperus sparsipunctatus Li & Zhou sp. nov. , and Bisnius lubricus Li & Zhou sp. nov. An identification key to the species of Pseudohesperus is provided and their geographical distributions are mapped. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 679–722.     

Revision and cladistic analysis of the jumping spider genus Onomastus (Araneae: Salticidae)

The jumping spider genus Onomastus Simon, 1900 is revised. Four new species: Onomastus indra sp. nov. , Onomastus kaharian sp. nov. , Onomastus pethiyagodai sp. nov. , and Onomastus rattotensis sp. nov. are described. Parsimony analysis of 26 morphological characters supported the monophyly of Onomastus. Lyssomanes is sister to Onomastus. Onomastus separates into two clades: the widespread South‐East Asia clade and the South Asia clade. The South Asia clade is restricted to the Sri Lanka–Western Ghats biodiversity hotspot. Species of the South Asia clade appear to be spot endemics, highly in danger of extinction because of habitat loss and climate change. Male palps are complex and species‐specific, suggesting rapid divergent evolution. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 159 , 711–745.     

Phylogeny of the shore crab family Grapsidae (Decapoda: Brachyura: Thoracotremata) based on a multilocus approach

The Grapsidae are a thoracotreme crab family with 40 species in eight genera (in their strict definition), and possess a number of morphological and molecular synapomorphies. Previous phylogenetic studies based on mitochondrial DNA markers established the monophyly of this family, but suggested possible paraphyly or polyphyly of some of the constituent genera. To test the validity of previous hypotheses, the present study reconstructed a molecular phylogeny of the grapsid crabs based on five molecular markers, including mitochondrial DNA markers and the first use of nuclear protein‐coding markers to address this issue. Monophyly of Grapsidae was confirmed, with the exception of the position of the monotypic genus Leptograpsodes. The polyphyly of the genus Pachygrapsus is consistent with previous molecular phylogenies, as members from this genus are dispersed throughout our gene tree. Grapsus and Planes were shown to be paraphyletic, with species of Pachygrapsus nested within them. Our study found incongruences between the currently adopted classification of the family, and hence taxonomic revisions will be needed. We hereby demonstrate the use of nuclear protein‐coding markers for high confidence reconstruction of decapod phylogenies, resolving most of the early splits that mitochondrial DNA markers alone are unable to tackle. © 2015 The Linnean Society of London