MULTIDIMENSIONAL SORTING, SIMILARITY SCALING AND FREE-CHOICE PROFILING OF GRAPE JELLIES

The sensory data from three different methods, multidimensional sorting, similarity scaling, and free-choice profiling were compared using ten commercial grape jellies as a model system. Without any prior training, the overall similarities/dissimilarities between stimuli were judged using both multidimensional sorting and pair-wise scaling and the sensory attributes were rated using free-choice profiling by different panels. A two-dimensional stimulus configuration best represented the data from each of the three methods. The underlying dimensions of stimulus space were identified from free-choice profiling data and also explained some background variables. The texture, sweetness, sourness, grape flavor and color contributed to both dimensions. All three methods were very similar in describing the most important differences among stimuli as suggested by the highly significant correlation between their first dimensions. The Procrustes analysis coupled with permutation tests, as well as RV coefficient, indicated that similarity scaling and free-choice profiling reached maximum consensus, whereas multidimensional sorting shared slightly lesser consensus with the other two methods.     

对应分析和去趋势分析在有蹄类取食模式研究中的应用

本研究将2009年1月和2010年1月小兴安岭大沾河湿地自然保护区二可河林场内驼鹿冬季食性作为原始数据,分别以对应分析（CA）、去趋势分析（DCA）,并将数据以样本为单位进行标准化后,再进行去趋势分析（DCA_std）3种排序方法,对驼鹿冬季取食模式进行了研究,后通过普鲁克分析,比较了不同排序方法对大型有蹄类取食模式研究的效果。结果表明,3种排序法的1轴和2轴均能涵盖绝大多数信息量,CA涵盖79.27%,DCA涵盖66.65%,DCA_std涵盖68.22%;3种方法均能够在1轴上区分针叶树和落叶乔木类食物,在2轴上,3种方法主要能够达到针叶树种与除落叶乔木外的其他植物类别的区分。虽三者均能够展现有蹄类取食模式,但在图形可视化后,仅DCA_std无明显的弓形效应。普鲁克分析结果表明,DCA_std样本位移平方和与CA和DCA均有很大差异,即将数据先进行标准化再进行DCA分析能够有效去除弓形效应。因此,在由多度组成的食性数据在进行标准DCA分析前,应对数据进行前期处理会得到更好的效果。同时,以样本为单位的标准化将使排序分析结果生态学意义更明确。     

MULTIVARIATE ANALYSIS OF CONVENTIONAL PROFILING DATA: A COMPARISON OF A BRITISH AND A NORWEGIAN TRAINED PANEL

Many studies have shown that conventional profiling provides reproducible and meaningful results. However, comparison of the technique as used in different countries appears to be nonexistent. In addition, data analysis is often approached differently, and this aspect is also addressed. This paper describes a study to compare the results obtained from profiling milk chocolate samples, using trained panels in Britain and Norway. Data were analyzed using principal component analysis, generalized Procrustes analysis and partial least squares regression. Results indicate that the underlying perceptual structure of the sample spaces obtained from both panels were similar, however, the emphasis on the underlying sensory dimensions differed. Moreover, it was possible to calibrate the two profiles, which has implications for marketing products for export, as well as providing a potential tool for panel monitoring and calibration across cultures.     

Effects of detrending and rescaling on correspondence analysis: solution stability and accuracy

Detrending and non-linear axis rescaling potentially improve the accuracy of gradient recovery in correspondence analyses but also reduce the stability or consistency of solutions. Variation among bootstrapped ordination solutions was compared across methods in analyses of both field and simulated data. Solution accuracy, measured with mean squared errors from Procrustes analysis, was compared using simulated data with known structure.Standard detrending-by-segments combined with non-linear rescaling entailed some cost in solution stability, but could improve the accuracy of solutions for long gradients. Without non-linear rescaling these solutions were usually less stable and less accurate. Although detrending-by-polynomials might be preferable on other grounds, it did not produce more accurate or stable solutions than detrending-by-segments.Abbreviations CA = correspondence analysis - DCA = detrended correspondence analysis - MSE = Procrustes mean squared error statistic - SD = standard deviation units of species turnover - SRV = scaled variance in species ranks     

EVALUATION AND APPLICATIONS OF ODOR PROFILING

An odor profiling procedure was developed based on the ASTM odor profiling method. This modified procedure involved using approximately twenty panelists. Panel sessions and data collection were controlled by computer. The results obtained by this panel compared favorably to results obtained by the ASTM panel for which 150 panelists evaluated each compound, indicating that a small panel can be used to produce replicable results. Statistical methods of finding similarities and dissimilarities among compounds using profile data are discussed and compared to results from a multidimensional scaling (MDS) study in which degrees of differences among compounds were judged directly. These results indicate that profile data can be used to define and map the degree of similarity/dissimilarity among compounds, as well as to define the sensory dimensions on which these compounds differ. The use of factor analysis to study the underlying sensory dimensions of the odor space is also discussed. It is hoped that this type of research will lead to a better understanding of the underlying dimensions used to describe odorants.     

不同时期鸡胚原始生殖细胞分离的研究

采用Ficoll密度梯度离心,酶解离两种方法在鸡胚孵化的第14期、19期、28期,分离、培养鸡胚中的原始生殖细胞(PGCs)。探索PGCs分离、培养的适宜时期及方法,以期获得较多数量,较高活力的PGCs作介导生产转基因鸡。结果表明：1．提取、分离PGCs的最佳时期依次为19期、28期。2．两种分离方法均能分离到一定数量的PGCs细胞。但在19期和28期,酶解离法分离到的PGCs的相对数量较多,存活时间较长,是一种较适宜的分离方法。     

棉田蜘蛛混合种群空间格局分析及应用

1996年5月上旬至下旬,在山西运城地区临猗县,选择高水肥及中水肥棉田进行蜘蛛混合种群空间格局的调查分析。用经典频次法分析,大部分样本符合负二项分布,少数样本有多解和无解现象。9种聚集指标结果均符合聚集分布型,聚类分析结果表明,9种指标可按其性质分成3类。Iwao M~＃-m模型为M~＃=3.5151 1.4765 m,改进的M~＃-M模型为M~＃=2.6423 1.9587 m-0.0246 m~2,Taylor的幂法则式为S~2=22.089M~(2.6466),其结果均为聚集分布。应用以上分析结果,建立棉田蜘蛛混合种群调查的简化抽样方案。用零样出现的百分率来估计百株蜘蛛数量的指数回归式为:P_O=(0.6011/(0.6011 m)~(0.6011);用有蜘蛛的株率来估计百株蛛量,则用以下指数回归式:Y=256.52~(1.5345)。     

SENSORY MEASUREMENT OF FOOD TEXTURE BY FREE-CHOICE PROFILING

Panelists were trained to measure texture of processed cheese analogues of known composition by free-choice profiling. Panel scores were analyzed by generalized Procrustes (a multivariate method). Plots of the Procrustes scores for the first 2 principal component axes from analysis of separate replicates reflected the experimental design. To compare replicates, scores from Procrustes analysis of the original data were subjected to Procrustes analysis. The results showed that panelists’ assessment of replicates was consistent. Regression of the scores from this second Procrustes analysis showed that they were well explained by the linear effects of either moisture in nonfat solids or fat content. Panelists who performed differently from the rest could be identified. Panelists were more sensitive to changes in moisture in nonfat solids content than fat. It was concluded that the sensory texture of the cheese analogues could be measured satisfactorily by free-choice profiling.     

UNDERSTANDING MOUTHFEEL ATTRIBUTES: A MULTIDIMENSIONAL SCALING APPROACH

Multidimensional scaling (MDS) was used to study qualitative relationships among mouthfeel attributes encountered in oral healthcare products. Similarity estimates were obtained from a rapid sorting task and from pairwise similarity ratings. Configurations were interpreted as suggesting four groupings of oral sensations: numbing, astringency, pain and taste. The pain-associated sensations were further differentiated into thermally related sensations and chemically related sensations in some configurations. Two-dimensional solutions from the sorting task and from group-averaged similarity ratings were similar. Individual differences scaling solutions, however, showed unacceptably high stress in two dimensions, suggesting additional nuances in meaning to individual panelists that were not captured by group-averaged data or by sorting data.     

高原裸裂尻鱼头部轮廓形状及其变异的几何形态测量分析

为了明确描述高原裸裂尻鱼的表型多样性,运用现代几何形态测量法,基于高原裸裂尻鱼头部轮廓的形态坐标数据,对其5个地理种群的样本做了定量分析。结果主要如下:①主成分分析（PCA）和典型变量分析（CVA）显示,5个地理种群的样本的变异主要位于口型特征、下吻部形状、下颌骨形状、下颌锐利角质程度和头部形状等性状。②基于主成分分析、典型变量分析和聚类分析,高原裸裂尻鱼三个亚种（班公湖亚种、玛法木湖亚种和指名亚种）相互分开,在PC1轴上从负值到正值依次排列,从而确定了高原裸裂尻鱼亚种划分的有效性。③通过形态差异的显著性检验,基于马氏距离和普氏距离分析了高原裸裂尻鱼各地理种群之间的形态变异距离,根据差异显著性将该5个地理种群的高原裸裂尻鱼分为湖泊型亚种和河流型亚种,随后的聚类分析同样支持该结果。总之,通过几何形态测量法,准确描述了高原裸裂尻鱼头部轮廓的形态多样性,按照外形的差异,将5个地理种群分为两种生态型,并推测该差异主要是由于所生活的水体环境和食物差异所造成。对高原裸裂尻鱼形态差异的识别和研究,能为其生态学研究和物种多样性保护提供相应指导,丰富微进化理论。     

Purification of Bone Marrow Clonal Cells from Patients with Myelodysplastic Syndrome via IGF-IR

Malignant clonal cells purification can greatly benefit basic and clinical studies in myelodysplastic syndrome (MDS). In this study, we investigated the potential of using type 1 insulin-like growth factor receptor (IGF-IR) as a marker for purification of malignant bone marrow clonal cells from patients with MDS. The average percentage of IGF-IR expression in CD34⁺ bone marrow cells among 15 normal controls was 4.5%, 70% of which also express the erythroid lineage marker CD235a. This indicates that IGF-IR mainly express in erythropoiesis. The expression of IGF-IR in CD34⁺ cells of 55 MDS patients was significantly higher than that of cells from the normal controls (54.0 vs. 4.5%). Based on the pattern of IGF-IR expression in MDS patients and normal controls, sorting of IGF-IR-positive and removal of CD235a-positive erythroid lineage cells with combination of FISH detection were performed on MDS samples with chromosomal abnormalities. The percentage of malignant clonal cells significantly increased after sorting. The enrichment effect was more significant in clonal cells with a previous percentage lower than 50%. This enrichment effect was present in samples from patients with +8, 5q-/-5, 20q-/-20 or 7q-/-7 chromosomal abnormalities. These data suggest that IGF-IR can be used as a marker for MDS bone marrow clonal cells and using flow cytometry for positive IGF-IR sorting may effectively purify MDS clonal cells.     

A Monte Carlo study of the inferential properties of three methods of shape comparison

Three inferential morphometric methods, Euclidean distance matrix analysis (EDMA), Bookstein's edge-matching method (EMM), and the Procrustes method, were applied to facial landmark data. A Monte Carlo simulation was conducted with three sample sizes, ranging from n = 10 to 50, to assess type I error rates and the power of the tests to detect group differences for two- and three-dimensional representations of forms. Type I error rates for EMM were at or below nominal levels in both two and three dimensions. Procrustes in 2D and EDMA in 2D and 3D produced inflated type I error rates in all conditions, but approached acceptable levels with moderate cell sizes. Procrustes maintained error rates below the nominal levels in 2D. The power of EMM was high compared with the other methods in both 2D and 3D, but, conflicting EMM decisions were provided depending on which pair (2D) or triad (3D) of landmarks were selected as reference points. EDMA and Procrustes were more powerful in 2D data than for 3D data. Interpretation of these results must take into account that the data used in this simulation were selected because they represent real data that might have been collected during a study or experiment. These data had characteristics which violated assumptions central to the methods here with unequal variances about landmarks, correlated errors, and correlated landmark locations; therefore these results may not generalize to all conditions, such as cases with no violations of assumptions. This simulation demonstrates, however, limitations of each procedure that should be considered when making inferences about shape comparisons. © 1996 Wiley-Liss, Inc.     

Spatial and temporal heterogeneity of the bacterial communities in stream epilithic biofilms

The spatial and temporal variability in bacterial communities within freshwater systems is poorly understood. The bacterial composition of stream epilithic biofilms across a range of different spatial and temporal scales both within and between streams and across the profile of individual stream rocks was characterised using a community DNA-fingerprinting technique (Automated Ribosomal Intergenic Spacer Analysis, ARISA). The differences in bacterial community structure between two different streams were found to be greater than the spatial variability within each stream site, and were larger than the weekly temporal variation measured over a 10-week study period. Greater variations in bacterial community profiles were detected on different faces of individual stream rocks than between whole rocks sampled within a 9-m stream section. Stream temperature was found to be the most important determinant of bacterial community variability using distance-based redundancy analysis (dbRDA) of ARISA data, which may have broad implications for riparian zone management and ecological change as a consequence of global warming. The combination of ARISA with multivariate statistical methods and ordination, such as multidimensional scaling (MDS), permutational manova and RDA, provided rapid and effective methods for quantifying and visualising variation in bacterial community structure, and to identify potential drivers of ecological change.     

Reconstructing community relationships: the impact of sampling error, ordination approach, and gradient length

Effectively summarizing complex community relationships is an important feature in studies such as biodiversity, global change, and invasion ecology. The reliability of such community summaries depends on the degree of sampling variability that is present in the data, the structure of the data, and the choice of ordination method, but the relative importance of these factors is not understood. We compared the validity of results from different ordination methods by applying five levels of sampling error to a simulated coenoplane model at two gradient lengths using two types of data (abundance and presence–absence). The multivariate methods we compared were correspondence analysis (CA), detrended correspondence analysis (DCA), non-metric multidimensional scaling (NMDS), principal component analysis (PCA) and principal coordinates analysis (PCoA). Our results showed CA and PCA using presence–absence data were the most successful methods regardless of sampling error and gradient length, closely followed by the other methods using presence–absence data. With abundance data, PCA and CA were the most successful approaches with the short and long gradients, respectively. Approaches based on PCoA and NMDS using abundance data did not perform well regardless of the choice of distance measure used in the analysis. Both of these methods, along with the PCA using abundance data, were strongly affected by the longer gradient, leading to more distorted results.     

A SIMPLE ALTERNATIVE TO GENERALIZED PROCRUSTES ANALYSIS: APPLICATION TO SENSORY PROFILING DATA

A statistical method for analyzing sensory profiling data obtained by means of fixed vocabulary or free choice profiling is discussed. The most interesting feature of this method is that it involves only simple statistical treatment and can therefore be performed using standard software packages. The outcomes of this method are compared to those of Generalized Procrustes Analysis on the basis of two data sets obtained, respectively, by means of fixed vocabulary and free choice profiling. A significance test is also discussed in order to assess whether the overall configuration of the products is meaningful. This significance test is based upon a simulation study involving the permutation procedure.     

EFFICIENCY OF A CYCLIC DESIGN AND A MULTIDIMENSIONAL SCALING SENSORY ANALYSIS TECHNIQUE IN THE STUDY OF SALT TASTE

Multidimensional scaling (MDS) procedures produce maps of stimulus points, the dimensions of which may be sensory and/or physicochemical attributes. Our objective was to test the efficiencies of a cyclic design and a MDS method in the study of saltiness perception. Two levels of NaCl (0.1% and 0.2%, w/v) were added to two nonionic and two ionic gum solutions prepared to two concentrations. Subjects scaled dissimilarities between pairs of solutions and rated each sample for flavor attributes. Solution pairs were selected using cyclic designs. Repeated measures ANOVA determined that added NaCl was the only significant factor affecting saltiness perception. In contrast, from KYST-2A MDS maps, we concluded that saltiness perception was influenced by gum property, gum concentration, presence of calcium and potassium, and related to binding of the sodium ion (Na⁺) as determined by ²³Na nuclear magnetic resonance (NMR) spectroscopy. The MDS cyclic design successfully reduced the number of samples and subjects when using experienced subjects.     

USAGE BEHAVIOR OF MEAT PRODUCTS BY AUSTRALIANS AND HONG KONG CHINESE: A COMPARISON OF FREE CHOICE AND CONSENSUS PROFILING

Australian and Hong Kong Chinese male and female consumers, aged 20 to 30 years, evaluated a range of 16 meat products using two questionnaires. One questionnaire comprised the 12 most frequently used terms by consumers to describe how, when and where they would most often consume each product. The alternate questionnaire for each individual comprised free choice vocabulary. Half of each consumer sample used the consensus questionnaire and the other half, the free choice questionnaire first, and indicated how often they would consume each meat product in the various contexts listed using graphic line scales of 100 mm anchored at either end by the words ‘never’ and ‘always’. After an interval of time, the alternate questionnaire was completed. It was found that similar conclusions can be drawn about major contextual dimensions either by principal component analysis of data from a consensus questionnaire or by generalized Procrustes analysis of data from free choice profiling.