盐渍条件下野大豆群体的遗传分化和生理适应:同工酶和随机扩增多态DNA研究

黄河三角洲野大豆(Glycine soja Sieb. et Zucc.)盐渍群体的耐盐性高于附近的正常群体。群体内个体间耐盐能力差别很大。盐渍群体有比最耐盐的栽培大豆(G.max (L.)Merr.)品种耐盐能力高得多的个体,也有对盐相当敏感的植株。同工酶分析表明群体内高水半多态性,但酶谱与抗性没有相关性。盐渍与正常群体间的遗传一致性高达0.96。用改良的随机扩增多态DNA(RAPD)方法,10个引物扩增得出群体内多态位点百分数为68/188=0.36。看来,绝大多数位点与耐盐能力无关。上述资料说明,盐渍条件下野大豆自然群体的高度遗传多样性和发育变通性,可能足对盐胁迫强度随时随地变化的环境的适应。     

Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean

Salt-affected soils are generally classified into two main categories, sodic (alkaline) and saline. Our previous studies showed that the wild soybean accession JWS156-1 (Glycine soja) from the Kinki area of Japan was tolerant to NaCl salt, and the quantitative trait locus (QTL) for NaCl salt tolerance was located on soybean linkage group N (chromosome 3). Further investigation revealed that the wild soybean accession JWS156-1 also had a higher tolerance to alkaline salt stress. In the present study, an F₆ recombinant inbred line mapping population (n = 112) and an F₂ population (n = 149) derived from crosses between a cultivated soybean cultivar Jackson and JWS156-1 were used to identify QTL for alkaline salt tolerance in soybean. Evaluation of soybean alkaline salt tolerance was carried out based on salt tolerance rating (STR) and leaf chlorophyll content (SPAD value) after treatment with 180 mM NaHCO₃ for about 3 weeks under greenhouse conditions. In both populations, a significant QTL for alkaline salt tolerance was detected on the molecular linkage group D2 (chromosome 17), which accounted for 50.2 and 13.0% of the total variation for STR in the F₆ and the F₂ populations, respectively. The wild soybean contributed to the tolerance allele in the progenies. Our results suggest that QTL for alkaline salt tolerance is different from the QTL for NaCl salt tolerance found previously in this wild soybean genotype. The DNA markers closely associated with the QTLs might be useful for marker-assisted selection to pyramid tolerance genes in soybean for both alkaline and saline stresses.     

江苏野生大豆的耐盐性和离子在体内的分布及选择性运输

以相对发芽率和出苗率为指标比较了3个野生大豆(Glycine soja)种群的耐盐性,测定了NaCl胁迫下2个耐盐性不同的野生大豆种群(江苏野生大豆,JWS,耐盐;N23232,盐敏感)植株根、茎和叶片中Na^+、K^+和Cl^-含量的变化。结果表明,JWS的耐盐性最强,盐胁迫抑制野生大豆幼苗生长,使其干物质积累量减少,根冠比上升,对耐盐性弱的N23232抑制作用大于耐盐性强的JWS,不同器官离子含量测定结果表明,盐胁迫下野生大豆茎部Na^+含量最高,耐盐的JWS根系具有积累Na^+和Cl^-的能力,叶片Na^+、Cl含量较低,而盐敏感种群N23232根系中：Na^+、Cl^-含量低于耐盐种群JWS,叶片中Na^+、Cl^-含量则高于JWS,JWS根系对K^+、Na^+吸收的选择性(selectivity ratio,SK,Na)和N23232没有明显差异;但叶片和茎运输的SK,Na明显高于N23232,使地上部K^+／Na^+较高,因此认为野生大豆根系对Na^+、Cl^-的积累及K^+向地上部运输的选择性高是其耐盐性强的主要原因。     

大豆耐盐机理及相关基因分子标记

大豆耐盐涉及多种生理代谢途径.耐盐大豆能够通过Cl-排除、控制Na 的吸收和转运、合成渗透调节物质、改变细胞膜膜脂组分及相关酶类的活性等多种形式来适应盐胁迫;野生大豆群体具有盐腺,从形态结构上适应盐逆境;大豆-根瘤菌共生体在盐胁迫下通过互作来提高整体的耐盐性.分子生物学技术应用于大豆耐盐研究,已获得了一些与耐盐相关基因连锁的分子标记.广泛搜集筛选大豆栽培种和野生种资源,利用分子生物学技术和基因工程提高大豆耐盐性,将成为未来大豆耐盐研究的主要内容.     

栽培大豆和野生大豆耐盐性及离子效应的比较

以国际上常用的耐盐大豆（Glycine max L.)品种Lee68为对照,在发芽期和苗期两个阶段,利用发芽指数、指害指数和耐盐系数等指标对一年生具盐腺野生大豆（Glycine soja L.)和部分栽培大豆（Glycine max L.)及某些野生大豆品系或品种的耐盐性进行了比较,讨论了耐盐指标的可行性。从离子效应方面比较了Na^ 和Cl^-对大豆发芽率的影响,并对具盐腺野生大豆的耐盐机理进行了初步分析。结果表明,大豆品种的耐盐性在发芽期和苗期无一致相关性。轻度等渗胁迫下,Na^ 对种子发芽率的抑制作用大于Cl^-,而重度等渗胁迫下则相反。通过减少由根系吸收的Na^ 、Cl^-向叶片的运输,维持叶片中较高含量的K^ ,减轻盐离子毒害,可能是具盐腺野生大事耐盐的主要生理机制之一。     

大豆耐盐机理及相关基因分子标记

大豆耐盐涉及多种生理代谢途径。耐盐大豆能够通过Cl-排除、控制Na+的吸收和转运、合成渗透调节物质、改变细胞膜膜脂组分及相关酶类的活性等多种形式来适应盐胁迫;野生大豆群体具有盐腺,从形态结构上适应盐逆境;大豆-根瘤菌共生体在盐胁迫下通过互作来提高整体的耐盐性。分子生物学技术应用于大豆耐盐研究,已获得了一些与耐盐相关基因连锁的分子标记。广泛搜集筛选大豆栽培种和野生种资源,利用分子生物学技术和基因工程提高大豆耐盐性,将成为未来大豆耐盐研究的主要内容。     

滨海盐渍土野大豆根瘤菌分离筛选及其在大豆中的应用

【目的】了解盐渍土野大豆根瘤菌的多样性，筛选具有耐盐促生作用的菌株，为栽培大豆耐盐菌剂的开发提供菌种资源。【方法】采用传统培养方法从滨海盐渍土野大豆中分离根瘤菌，评价菌株的促生特性，并验证其对野大豆和栽培大豆的促生效果。【结果】从野大豆根和根瘤样品中分离出87株根瘤菌，主要为中华根瘤菌属(Sinorhizobium)、根瘤菌属(Rhizobium)和慢生根瘤菌属(Bradyrhizobium)。测定了24株代表性菌株的促生特性，发现有16株根瘤菌具有产吲哚-3-乙酸(indole-3-acetic acid, IAA)能力，6株能够产生1-氨基环丙烷-1-羧酸(1-amino-cyclopropane-1- carboxylic, ACC)脱氨酶，16株具有溶磷活性，6株能够产生铁载体。根据以上促生特性，选择了11株优良根瘤菌进行野大豆促生和结瘤能力评价，发现美洲中华根瘤菌(Sinorhizobium americanus) DL3的性能优于其他菌株。最后，通过盆栽试验检测了菌株DL3对野大豆和栽培大豆耐盐能力的影响，发现菌株DL3在盐胁迫下能促进野大豆和大豆的生长，同时，降低了叶片脯氨酸水平，缓解了植物的盐胁迫程度。【结论】菌株DL3在提高植物耐盐性方面具有一定的作用，对实现大豆的盐碱地种植具有重要的理论意义和实践价值。     

野生大豆耐盐性研究进展

野生大豆对于拓宽大豆种质遗传基础和丰富大豆种质基因库具有重要意义.该文从野生大豆的资源概况及优良性状、耐盐机理和利用野生大豆提高栽培大豆耐盐性等三个方面,对近年来国内外有关野生大豆耐盐性的解剖结构、生理基础、分子生物学基础等方面的研究进展进行了系统综述,并提出野生大豆通过茎叶表皮上的"腺体"及对Na+和Cl-的排斥性,实现对盐渍环境的颉颃作用.较强的抗氧化能力、大豆异黄酮代谢和耐盐基因也是其适应盐渍环境的重要原因.今后应对野生大豆耐盐机理的遗传学基础进行深入研究,并通过种群保护以保障野生大豆的发掘鉴定和创新利用.     

Comparison of Some Characteristics Between Phragmites communis and Its Salt Tolerant Variant

R5002-12, a salt tolerant line of Phragmites communis Trin., which was obtained from ethyl methane sulfonate (EMS) treated callus selected under saline stress, was compared with its wild line in respect to their molecular biological, physiological and biochemical characterizations. Five arbitrary primers were screened which showed differences in DNA amplified polymorphism between the variant and its wild line. Some new proteins appeared in the salt tolerant plant under salt stress. Electrophoresis of peroxidase and esterase also showed some differences in isozyme expression between them. The chlorophyll content of the variant was higher than that of the original variety, whether the plants were under salt stress or not.     

芦苇耐盐变异体与野生型植株某些特性的比较

地通过细胞工程方法得到的耐盐芦苇（Ｐｈｒａｇｍｉｔｅｓ ｃｏｍｍｕｎｉｓ Ｔｒｉｎ．）变异系Ｒ５００２－１２与野生型植株进行了分子生物学和生理生化特性比较分析。筛选到５个ＲＡＰＤ引物对变异体和野生型植株的ＤＮＡＦ的随机扩增表现出不同的多态性,表明该变异体在分子水平上发生了变化。生理生化分析的结果表明,平行生长状态下的两种株系,其可溶性蛋白和同工酶的表达水平和种类不一样,变异体在ＮａＣｌ胁迫下,表达     

Diversity analysis of selected rice landraces from West Bengal and their linked molecular markers for salinity tolerance

Study of genetic diversity in crop plants is essential for the selection of appropriate germplasm for crop improvement. As salinity posses a serious environmental challenge to rice production globally and especially in India, it is imperative that the study of large collections of germplasms be undertaken to search for salt tolerant stocks. In the present study, 64 indica germplasms were collected from different agro-climatic zones of West Bengal, India, from the Himalayan foothills in the northern part down to the southern saline belt of the state keeping in view the soil characteristics and other edaphic factors prevailing in the region. Salt tolerance parameters were used to screen the large set of germplasms in terms of root-shoot length, fresh-dry weight, chlorophyll content, Na+/K+ ratio and germination potential in presence of salt. Standard evaluation score or SES was calculated to find out tolerant to sensitive cultivar. Twenty-one SSR markers, some associated with the Saltol QTL and others being candidate gene based SSR (cgSSR) were used to study the polymorphism of collected germplasm. A wide diversity was detected among the collected germplasms at the phenotypic as well as molecular level. Of the 21 SSR markers, 15 markers were found to be polymorphic with 88 alleles. Based on phenotypic and biochemical results, 21 genotypes were identified as salinity tolerant, whereas 40 genotypes turned out to be salt susceptible. The present study shows that apart from the established salt tolerant lines, several other landraces like Bonkanta, Morisal, Ghiosh, Patni may be the source of salt tolerant donor in future breeding programs.     

野大豆种群转座子和转录因子的多样性和分子适应

对环境变化的适应机理一直是进化生物学和生态学长期争论的核心课题。根据适应逆境的生态学和分子生理的最新进展,设想逆境诱导转座子的转座,影响转录因子的表达,随即改变一系列抗性基因的表达水平,抗性种群快速适应形成;由此可能建立一个统一的进化理论。从黄河入海口野生大豆(Glycine soja)盐渍种群植株DNA扩增到一段干旱应答元件结合蛋白基因(DREB)序列,称为GsDREB1。克隆了一个全长的类Gypsy逆转录转座子整合酶基因序列,称为GsINT。种群内各植株该序列有多个拷贝,植株间存在限制片段长度多态性。根据所得的这两个序列,设计并合成包括GsINT 5'上游保守序列的Gs-1等若干引物,试图检测野大豆基因组中GsDREB1的5'上游是否存在逆转录转座子整合酶序列。将GsDREB1标记为探针,Southern杂交表明用Gs-1为正向引物GmDR1为逆向引物所扩增的产物既是多拷贝而又与GsDREB1高度同源。这一对引物扩增和部分测序的结果暗示逆转录转座子有的插入DREB的5'上游,种群内外植株间显现两基因间隔长度的多样性。据此提出抗性种群形成即适应进化分子机理的下列假说。正常种群主要由非抗性普通植株组成。当环境发生变化处于逆境条件时,种群内植株转座频率大大增加。转座子非定向地插入基因组。多数突变中性,不影响表型。少数插入到转录因子的5'上游或其编码区,可促进或阻抑其表达,由此引发转录因子所控制的抗性基因网络表达的增加或减少,抗性相应增加或降低。总的结果是在短时间内就能积累包括高抗性植株在内的有各种抗性水平的个体;对逆境敏感的个体不断地被自然选择所淘汰,但逆境不断诱导其产生,少数植株有可能利用逆境减弱的较短时间完成发育得以生存下来。此假说可以解释逆境条件下的植物种群为什么能快速形成而有更高的遗传多样性;又为什么抗性种群在高抗性植株产生的同时有时存在敏感植株。逆境促进的转座改变转录因子基因表达可能是植物生理和形态快速进化的一般分子机理。     

Comparative analyses of genetic/epigenetic diversities and structures in a wild barley species (Hordeum brevisubulatum) using MSAP, SSAP and AFLP

We analyzed genetic diversity and population genetic structure of four artificial populations of wild barley (Hordeum brevisubulatum); 96 plants collected from the Songnen Prairie in northeastern China were analyzed using amplified fragment length polymorphism (AFLP), specific-sequence amplified polymorphism (SSAP) and methylation-sensitive amplified polymorphism (MSAP) markers. Indices of (epi-)genetic diversity, (epi-)genetic distance, gene flow, genotype frequency, cluster analysis, PCA analysis and AMOVA analysis generated from MSAP, AFLP and SSAP markers had the same trend. We found a high level of correlation in the artificial populations between MSAP, SSAP and AFLP markers by the Mantel test (r > 0.8). This is incongruent with previous findings showing that there is virtually no correlation between DNA methylation polymorphism and classical genetic variation; the high level of genetic polymorphism could be a result of epigenetic regulation. We compared our results with data from natural populations. The population diversity of the artificial populations was lower. However, different from what was found using AFLP and SSAP, based on MSAP results the methylation polymorphism of the artificial populations was not significantly reduced. This leads us to suggest that the DNA methylation pattern change in H. brevisubulatum populations is not only related to DNA sequence variation, but is also regulated by other controlling systems.     

中国野生大豆遗传资源搜集基本策略与方法

遗传资源搜集原则是通过种子采集追求样本具有最高程度的遗传多样性。为了合理而有效地搜集野生大豆资源,近年来通过野生大豆居群考察和遗传多样性分析,初步明确了野生大豆资源居群的遗传多样性分布动态:遗传多样性地理的和生态的区域性、生态系统内居群的遗传相关性及各种生境下居群遗传多样性差异,从理论上奠定了野生大豆资源合理有效搜集的依据。根据居群遗传多样性的分布规律,初步建立了居群野生大豆资源的搜集策略和方法。     

栽培大豆种质资源耐盐性的研究进展

评价、筛选并利用栽培大豆的耐盐种质资源,对开发利用盐渍土具有极其重要的意义。本文从耐盐性评价方法、耐盐的生理生化基础、耐盐的分子生物学基础及耐盐种质的筛选与创新等4方面,对栽培大豆的耐盐性研究进展进行了系统综述。同时对栽培大豆耐盐性研究现存的问题与今后的发展方向进行了讨论,以期为栽培大豆耐盐性研究提供参考。     

Validation and high-resolution mapping of a major quantitative trait locus for alkaline salt tolerance in soybean using residual heterozygous line

Alkaline soil restricts soybean plant growth and yield. In our previous study, a major alkaline salt tolerance quantitative trait locus (QTL) was identified in soybean on chromosome 17. In this study, the residual heterozygous line (RHL46), which was selected from a population of F6 recombinant inbred lines (RILs) derived from a cross between an alkaline salt-sensitive soybean cultivar Jackson and a tolerant wild soybean accession JWS156-1, was used for validation and high-resolution mapping of the QTL. In a large segregating population (n = 1,109), which was produced by self-pollinating heterozygotes of RHL46, segregation of alkaline salt tolerance showed a continuous distribution, and the tolerant plants were predominant. Linkage mapping analysis revealed a major QTL with a large dominant effect for alkaline salt tolerance, and the highest LOD score was detected between the single sequence repeat (SSR) markers GM17-12.2 and Satt447. Furthermore, 10 fixed recombinant lines carrying chromosome fragments of different lengths in the QTL region were selected from the RHL46 progeny. Phenotype evaluation and SSR marker analysis of the recombinant lines narrowed down the QTL to a 3.33-cM interval region between the markers GM17-11.6 and Satt447 with a physical map length of approximately 771 kb. High-resolution mapping of the alkaline salt tolerance QTL will be useful not only for marker-assisted selection in soybean breeding programs but also for map-based cloning of the alkaline salt tolerance gene in order to understand alkaline salt tolerance in soybean and other plant species.     

北京地区野生大豆种群SSR标记的遗传多样性评价

 使用40对SSR引物分析了北京地区野生大豆(Glycine soja)天然种群的遗传结构与遗传多样性。10个种群共检测到526个等位变异, 平均每对引物等位基因数为13.15个, 种群平均Shannon指数(I)为0.658, 群体平均位点预期杂合度(H_e)为0.369, 群体平均位点杂合度(H_o)为1.29 %。平均种群内遗传多样度(H_s)为0.362, 平均种群间遗传多样度(D_ST)为0.446, 基因分化程度(G_ST)为0.544。该研究显示, 中-西部生态区种群比北部和东部山区种群有较高的遗传多样性。在地理上, 环绕北京地区的太行山和燕山两大余脉区域野生大豆种群遗传分化表现出地理差异。可能是经过干旱选择而形成的有抗旱潜力的种群在遗传上表现单一化。期待该种群提供耐旱基因。     

Importance of genetic characterization and conservation of plant genetic resources: The breeding system and genetic diversity of wild soybean (Glycine soja)

Abstract Plant genetic resources play an important role in the improvement of cultivated plants. To characterize and evaluate the ecological and reproductive features of wild soybean ( Glycine soja Sieb. et Zucc.), which is the most probable ancestor of cultivated soybean ( G. max (L) Merr.), the breeding system and genetic diversity of G. soja were investigated. The extent of natural cross-pollination of G. soja was estimated in four populations along the Omono River in Akita Prefecture, Japan by examining allozyme variation. Although it has been previously believed that G. soja is autogamous, as is cultivated soybean, the mean multilocus outcrossing rate ( t m) estimate was 13%. These values are much higher than the outcrossing rate previously reported for both G. soja and G. max . Frequent visits by honeybees and carpenter bees to flowers were also observed, which supported this conjecture. Furthermore, to evaluate the genetic variation of G. soja as a genetic resource, the genetic structure of 447 populations over Japan were analyzed. Wild soybean populations had a higher degree of variation of isozyme loci. The G ST coefficient of gene differentian values among the sites within the district were particularly high, revealing that the isozyme genotype was greatly different among site populations and homogeneous within the sites. The genetic differentiation among nine districts was observed in the allele frequencies of a few loci, indicating that geographic isolation in the wild soybean population was effectively created through the distance between the districts. The difference in the allele frequency among the districts may be produced under genetic drift. Finally, the importance of the preservation of natural plant populations and the habitats of wild progenitors (i.e. the in situ conservation of plant genetic resources) was emphasized.