Simple generalisation of a mesophyll resistance model for various intracellular arrangements of chloroplasts and mitochondria in C<Subscript>3</Subscript> leaves

The classical definition of mesophyll conductance (g _m) represents an apparent parameter (g _m,app) as it places (photo)respired CO₂ at the same compartment where the carboxylation by Rubisco takes place. Recently, Tholen and co-workers developed a framework, in which g _m better describes a physical diffusional parameter (g _m,dif). They partitioned mesophyll resistance (r _m,dif = 1/g _m,dif) into two components, cell wall and plasmalemma resistance (r _wp) and chloroplast resistance (r _ch), and showed that g _m,app is sensitive to the ratio of photorespiratory (F) and respiratory (R _d) CO₂ release to net CO₂ uptake (A): g _m,app = g _m,dif/[1?+?ω(F?+?R _d)/A], where ω is the fraction of r _ch in r _m,dif. We herein extend the framework further by considering various scenarios for the intracellular arrangement of chloroplasts and mitochondria. We show that the formula of Tholen et al. implies either that mitochondria, where (photo)respired CO₂ is released, locate between the plasmalemma and the chloroplast continuum or that CO₂ in the cytosol is completely mixed. However, the model of Tholen et al. is still valid if ω is replaced by ω(1?σ), where σ is the fraction of (photo)respired CO₂ that experiences r _ch (in addition to r _wp and stomatal resistance) if this CO₂ is to escape from being refixed. Therefore, responses of g _m,app to (F?+?R _d)/A lie somewhere between no sensitivity in the classical method (σ =1) and high sensitivity in the model of Tholen et al. (σ =0).     

Electronic structure,rovibrational, and dipole moment calculations for the AsCl molecule

The potential energy curves of the 19 lowest-lying singlet and triplet electronic states in the ^2S+1Λ^(+/?) representation of the AsCl molecule have been investigated using the complete active space self-consistent field (CASSCF) with multireference configuration interaction (MRCI+Q) method including single and double excitations and with the Davidson correction. The harmonic frequency ω _e, the internuclear distance R _e, the dipole moment, and the electronic energy with respect to the ground state T _e were calculated for the electronic states considered. By using the canonical functions approach, the eigenvalue E _v, the rotational constant B _v, and the abscissae of the turning points R _min and R _max were calculated for the electronic states up to the vibrational level v?=?60. The values obtained in the present work agree well with corresponding values available in the literature for several electronic states. Fifteen new electronic states were investigated here for the first time.     

Anomalous pinch in the T-11M tokamak in an enhanced-collisionality regime

The formation of a peaked bell-shaped profile of the electron density n _e (r) in the T-11M tokamak (B _t=1 T, R/a = 0.7/0.2 m, I _p = 100 kA, t _shot ≤ 300 ms, Li and C limiters) was observed in Li experiments carried out in the near-plateau collisionality regime (the collisionality parameter at one-half of the minor radius was v* ≥ 0.5) under the conditions of low hydrogen recycling and intense hydrogen influx from the plasma edge. It is well known that peaked n _e (r) profiles are observed in collisionless regimes at v* values as low as 10^?1–10^?2 or in impurity-contaminated discharges, in which this effect can be attributed to the impurity accumulation on the plasma column axis. Moreover, a bell-shaped n _e (r) profile in discharges with low n _e can result from the ionization of hydrogen atoms at the column axis, where they arrive from the plasma edge due to cascade charge-exchange. In quasi-steady lithium discharges in T-11M, however, peaked n _e (r) profiles were observed at a relatively high central electron density n _e (0) and relatively high collision frequency, such that the influence of impurities on the n _e (r) profile could be ignored (Z _eff = 1.1±0.1). To explain this effect, one has to assume that the pinching of hydrogen ions in T-11M is anomalous. The lower estimate of the observed pinch velocity is 4 ± 1 m/s, which is three to five times higher than the velocity of the neoclassical (Ware) pinch, characteristic of these conditions. The work is devoted to the experimental study of this effect.     

On fast solid-body rotation of the solar core and differential (liquid-like) rotation of the solar surface

On the basis of a two-component (two-fluid) hydrodynamic model, it is shown that the probable phenomenon of solar core rotation with a velocity higher than the average velocity of global rotation of the Sun, discovered by the SOHO mission, can be related to fast solid-body rotation of the light hydrogen component of the solar plasma, which is caused by thermonuclear fusion of hydrogen into helium inside the hot dense solar core. Thermonuclear fusion of four protons into a helium nucleus (α-particle) creates a large free specific volume per unit particle due to the large difference between the densities of the solar plasma and nuclear matter. As a result, an efficient volumetric sink of one of the components of the solar substance—hydrogen—forms inside the solar core. Therefore, a steady-state radial proton flux converging to the center should exist inside the Sun, which maintains a constant concentration of hydrogen as it burns out in the solar core. It is demonstrated that such a converging flux of hydrogen plasma with the radial velocity v _r (r) = ?βr creates a convective, v _r ?v _φ/?r, and a local Coriolis, v _r v _φ/r,φ nonlinear hydrodynamic forces in the solar plasma, rotating with the azimuthal velocity v _φ. In the absence of dissipation, these forces should cause an exponential growth of the solid-body rotation velocity of the hydrogen component inside the solar core. However, friction between the hydrogen and helium components of the solar plasma due to Coulomb collisions of protons with α-particles results in a steady-state regime of rotation of the hydrogen component in the solar core with an angular velocity substantially exceeding the global rotational velocity of the Sun. It is suggested that the observed differential (liquid-like) rotation of the visible surface of the Sun (photosphere) with the maximum angular velocity at the equator is caused by sold-body rotation of the solar plasma in the radiation zone and strong turbulence in the tachocline layer, where the turbulent viscosity reaches its maximum value at the equator. There, the tachocline layer exerts the most efficient drag on the less dense outer layers of the solar plasma, which are slowed down due to the interaction with the ambient space plasma (solar wind).     

Relative Stabilities of C<Subscript>92</Subscript> IPR Fullerenes

The complete set of 86 isolated-pentagon-rule (IPR) isomers of C₉₂ has been described by the SAM1 quantum-chemical method, and their energetics checked by density functional theory at the B3LYP/6-31G* level. Although the lowest-energy cage is not identical in both approaches, it still exhibits D ₂ symmetry in both cases. As energetics themselves cannot produce reliable relative stabilities at high temperatures, entropy terms are also computed and the relative-stability problem is treated entirely in terms of the Gibbs function. The lowest-energy structure is not the most populated isomer at higher temperatures – it is replaced by a D ₃ structure. Further stability interchanges are possible at very high temperatures, when C ₃ and C ₁ structures are also important. There is a partial agreement of the computations with available observed data.     

<Emphasis Type="Italic">Artemisia frigida</Emphasis> and <Emphasis Type="Italic">Stipa krylovii</Emphasis>, two dominant species in Inner Mongolia steppe,differed in their responses to elevated atmospheric CO<Subscript>2</Subscript> concentration

Aims

Despite extensive studies on effects of elevated CO₂ concentration ([CO₂]_e) on plant growth, few studies have investigated the responses of native grassland plant species to [CO₂]_e in terms of nutrient acquisition.

Methods

The effects of [CO₂]_e (769 ± 23 ppm) on Artemisia frigida and Stipa krylovii, two dominant species in Inner Mongolia steppe were investigated by growing them for 7 weeks in Open-Top Chambers (OTC).

Results

Exposure to [CO₂]_e enhanced shoot and root growth of A. frigida and S. krylovii. Elevated [CO₂] increased photosynthetic rates (Pn) by 34 % in A. frigida but decreased Pn by 52 % in S. krylovii. Moreover, root-secreted acid phosphatase activity in A. frigida was stimulated by [CO₂]_e, while exudation of malate from roots of S. krylovii was suppressed by [CO₂]_e. Exposure to [CO₂]_e led to a decrease in P concentration in shoots and roots of A. frigida and S. krylovii, but total amount of P accumulated in shoots and roots of both species was increased by [CO₂]_e.

Conclusions

The two dominant species in temperate steppes differed in their responses to [CO₂]_e, such that A. frigida was more adapted to [CO₂]_e than S. krylovii under low availability of soil P.

     

Simulations of the Ion Current to a Probe in Plasma with Allowance for Ionization and Ion–Neutral Collisions: II. Cylindrical Probe

The ion current to a cylindrical probe is considered with allowance for volume ionization, ion–neutral collisions, and the ion orbital moment. A model based on the molecular dynamics method and applicable in a wide range of plasma parameters (r_p/λ_D= 0.01–100, r_i/λ_D= 0.002–200, ν_i/ω_0i= 0.01–0.05, and T_i/T_e = 0?0.01) is proposed A convenient representation of the dependence of the relative ion current density on the Langmuir coefficient β² and a technique for determining the plasma density from simulation results are offered.     

On the minimum electron transport coefficients in tokamaks in the range of low collision frequencies

There are two close empirical scalings, namely, the T-11 and neo-Alcator ones, that provide correct estimates for the energy confinement time in tokamaks in ohmic heating regimes in the linear part of the dependence τ _E (\(\bar n_e \)) in the range of low values of \(\bar n_e \) and 〈ν _e ^* 〉 ≤ 1. The similar character of electron energy confinement in this range, which expands with increasing magnetic field B ₀, has stimulated the search for dimensionless parameters and simple physical models that would explain the experimentally observed dependences χ _e ～ 1/n _e and τ _Ee ～ \(\bar n_e \). In 1987, T. Okhawa showed that the experimental data were satisfactorily described by the formula χ_e⊥ = (c ²/ω _pe ² )ν _e /qR, in deriving of which the random spatial leap along the radius r on the electron trajectory was assumed to be the same as that in the coefficient of the poloidal field diffusion, while the repetition rate of these leaps was assumed to be ν _e /qR. In 2004, J. Callen took into account the decrease in the fraction of transient electrons with increasing toroidal ratio ? = r/R and corrected the coefficient c ²/ω _pe ² in Okhawa equation by the factor σ _‖ ^Sp /σ _‖ ^neo . If one takes into account this correction and assumes that the frequency of the stochastic process is equal to the reciprocal of the half-period of rotation of a trapped electron along its banana trajectory, then the resulting expression for χ_e⊥ will coincide with the T-11 scaling: χ _e ^an ∞ ?^1.75(T _e /A _i )^0.5/(n _e qR) at A i = 1. If the same stochastic process also involves ions, it may result in the opening of the orbit of a trapped ion at the distance ～(c/ω _pe )(m _i /m _e )^1/4. In this case, the calculated coefficient of electron and ion diffusion D is close to D ^an ≈ χ _e ^an /2.     

Stable solution to <Emphasis Type="Italic">l</Emphasis><Subscript>2,1</Subscript>-based robust inductive matrix completion and its application in linking long noncoding RNAs to human diseases

Backgrounds

A large number of long intergenic non-coding RNAs (lincRNAs) are linked to a broad spectrum of human diseases. The disease association with many other lincRNAs still remain as puzzle. Validation of such links between the two entities through biological experiments are expensive. However, a plethora lincRNA-data are available now, thanks to the High Throughput Sequencing (HTS) platforms, Genome Wide Association Studies (GWAS), etc, which opens the opportunity for cutting-edge machine learning and data mining approaches to extract meaningful relationships among lincRNAs and diseases. However, there are only a few in silico lincRNA-disease association inference tools available to date, and none of them utilizes side information of both the entities simultaneously in a single framework.

Methods

The recently developed Inductive Matrix Completion (IMC) technique provides a recommendation platform among two entities considering respective side information about them. However, the formulation of IMC is incapable of handling noise and outliers that may be present in the datasets, while data sparsity consideration is another issue with the standard IMC method. Thus, a robust version of IMC is needed that can solve the two issues. As a remedy, in this paper, we propose Stable Robust Inductive Matrix Completion (SRIMC) that utilizes the l _2,1 norm based regularization to optimize the objective function with a unique 2-step stable solution approach.

Results

We applied SRIMC to the available association data between human lincRNAs and OMIM disease phenotypes as well as a diverse set of side information about the lincRNAs and the diseases. The method performs better than the state-of-the-art methods in terms of p r e c i s i o n @ k and r e c a l l @ k at the top-k disease prioritization to the subject lincRNAs. We also demonstrate that SRIMC is equally effective for querying about novel lincRNAs, as well as predicting rank of a newly known disease for a set of well-characterized lincRNAs.

Conclusions

With the experimental results and computational evaluation, we show that SRIMC is robust in handling datasets with noise and outliers as well as dealing with novel lincRNAs and disease phenotypes.

     

Thermal Preference of the Bush Cricket <Emphasis Type="Italic">Isophya rizeensis</Emphasis>; Testing the Effect of Countergradient Selection

Thermal preference is one of the most crucial components of behavioral thermoregulation in ectotherms, and documenting the adaptation of thermal preference carries great importance for studying the evolution of thermal biology. However there are not many studies focusing on the adaptation of thermal preference in elevational and latitudinal gradients. Isophya rizeensis is a color polymorphic bush cricket species endemic to the mountainous region of northeastern Turkey. Populations of this species are distributed in a wide elevational range between 350 and 2300 m. In this study, we hypothesized that the thermal preference of Isophya rizeensis might follow a countergradient variation where crickets from higher altitudes have higher temperature preferences compared to crickets from lower altitudes. To test this hypothesis, thermal preference values (T _pref ) of crickets from three altitudes groups (low, middle and high) were measured with a thermal gradient experiment. Additionally, body temperatures (T _b ) and environmental temperatures (T _a ) were measured in field. Deviation values of T _b and T _a from T _pref were calculated to investigate the extent of thermoregulation. As Isophya rizeensis is color polymorphic species where morphology pattern changes from lighter to darker types with increasing altitude we also tested whether coloration has any effect on temperature excess (T _ex ) and thermoregulation. Thermal preference values did not differ significantly between three groups and also colouration does not influence the extent of thermoregulation in this species. These results indicate that there is not sufficient evidence for the existence of a countergradient selection related with thermal behavior. However, the deviation of body (D _b ) and environmental (D _a ) temperatures suggest that at higher altitudes thermoregulation might be more efficient than lower altitudes.     

Evaluation of domestic wastewater treatment using microalgal-bacterial processes: effect of CO<Subscript>2</Subscript> addition on pathogen removal

Microalgal-bacterial processes represent a sustainable and cost-effective biotechnology able to promote efficient wastewater treatment, including natural pathogen removal (disinfection), as well as being able to perform CO₂ uptake and biogas upgrading. In this context, the influence of CO₂ supply from a synthetic gas mixture (30% v/v CO₂) on the removal of pathogens (Pseudomonas, enterococci, and Escherichia coli) and total coliforms during secondary domestic wastewater treatment by a microalgal-bacterial symbiosis in a 180-L high-rate algal pond (HRAP) was investigated. The supply of CO₂ in the HRAP positively influenced the Pseudomonas aeruginosa removal, with the removal efficiency increasing from 97.4% (1.6 log) to 99.6% (2.5 log) without and with CO₂ supply, respectively. Likewise, the total coliform removal efficiency rose from 88.7% (1.1 log) to 99.4% (2.8 log). On the other hand, the effect of CO₂ supply on enterococci (99.7% and 2.6 log) and Escherichia coli (98.6% and 2.2 log) removal was negligible.     

Laboratory modeling of nonstationary processes in space cyclotron masers: First results and prospects

Results are presented from laboratory modeling of the dynamics of space cyclotron masers. A selfoscillatory mode of cyclotron instability in the nonequilibrium plasma of an ECR discharge in a magnetic mirror trap is found. The plasma comprises two electron populations: the background population with a density of N _e ～ 10¹³–10¹⁴ cm^?3 and temperature of T _e ≈ 300 eV and the energetic population with a density of N _e ～ 10¹⁰ cm^?3 and temperature of T _e ≈ 10 keV. Quasi-periodic pulsed precipitation of energetic electrons from the trap, accompanied by microwave bursts at frequencies below the electron gyrofrequency in the center of the trap, is detected. The study of the microwave plasma emission and the energetic electrons precipitated from the trap shows that the precipitation is related to the excitation of whistler-mode waves propagating nearly parallel to the trap axis. The observed instability has much in common with phenomena in space magnetic traps, such as radiation belts of magnetized planets and solar coronal loops. The experimental results demonstrate the opportunity of laboratory modeling of space cyclotron masers. The main tasks and possibilities of such modeling are discussed.     

Evidences and magnitude of nighttime transpiration derived from <Emphasis Type="Italic">Populus euphratica</Emphasis> in the extreme arid region of China

Extensive research has found that nighttime transpiration (E _n) is positively correlated to the vapour pressure deficit (VPD), that suggested E _n was highest during the night under high temperatures and low humidity along with high soil water availability, typically for the riparian forest in the extreme arid region of China. This study used the heat ratio method to measure sap velocity (V _s) for mature and saplings Populus euphratica Oliv., and then E _n was conservatively calculated as total nocturnal sap flow (F _s, the product of V _s and sapwood area A _s) between 01:00 to 06:00. A gas exchange system was used to measure the leaf transpiration rate (T _r) and stomatal conductance (g _s) of saplings. For mature trees, nighttime V _s was extensive and logarithmic correlated to VPD (similar to daytime). For saplings, g _s and T _r was extensive in different months, and also a strong logarithmic relationship was found between V _s and VPD for both daytime and nighttime periods. Both of stem sap flow and leaf gas exchange suggusted the occurrence of E _n, whether mature or sapling trees. E _n contribution to daily transpiration (E _d) was high just as expected for P. euphratica, which was confirmed by proportional E _n to E _d (E _n/E _d) means taken in 2012 (24.99%) and 2013 (34.08%). Compared to mature trees, E _n/E _d of saplings in 2013 was lower with means of 12.06%, that supported further by the shorter duration times and less T _r,n (16.64%) and g _s,n (26.45%) of leaf, suggesting that E _n magnitude is associated to individual the tree size, that effect to stored water of individual trees, although this hypothesis requires further research.     

Electron density modulation in magnetic islands in the TUMAN-3M tokamak

MHD oscillations with m/n = 4/1 and 3/1 that arise at the periphery of the TUMAN-3M tokamak in the initial stage of a discharge are investigated. It is found that these oscillations lead to a significant modulation of the electron density n _e , which is attributable to the accumulation of plasma within a magnetic island. Numerical simulations of the modulation structure made it possible to determine the radius of the resonant surface and the radial width of the island and to evaluate the characteristic density gradient in the island. The gradient was found to be ten times larger than that of the unperturbed profile of n _e (r) near the resonant surface. This points to reduced plasma transport within the magnetic island.     

Informative Value of Temperatures in Different Areas of the Human Body for Correcting Body Thermal Imbalance during Extravehicular Activities

Identification of noninvasive and informative sites on the body reflecting the development of body thermal imbalance during extravehicular activities (EVAs) is highly important for enhancing astronaut safety. Temperature changes were evaluated on several areas of the head (the mastoid fossa (T _mf ), the forehead (T _fo ), and the cheek (T _ch )) and on the fingers (T _fing ). Subjects were dressed in a multicompartment liquid cooling/warming garment. Studies I and II consisted of different combinations of hood versus garment cooling or warming imposed across stages; studies III and IV involved sagittally divided cooling or warming regimes with the hood worn (study III) or with the head uncovered (study IV). In studies I and II, T _mf significantly (P < 0.05) differed between stages 2, when the head was cooled and the rest of the body heated, and 3, when the head was heated and the rest of the body cooled. The T _mf changes were consistent with the thermal conditions imposed on the head but not reflective of the developing body heat deficit. In study III, the T _mf at stages 2 and 3 on the right or the left followed the thermal conditions on the ipsilateral side of the body (P < 0.01). In study IV, T _fing showed no significant differences across stages. In studies I–IV, T _fing showed consistent changes across stages (P < 0.05), reflecting the developing body heat deficit. In all studies, there were no significant differences in rectal temperature (T _re ) across stages. T _mf and temperatures at other head skin sites did not respond in accordance with the actual intensity of a heat or cold flux from the garment and were not reflective of the overall development of body thermal imbalance. T _fing was a more adequate indicator of initial thermal destabilization and provided information that would be useful for monitoring the thermal balance and comfort during EVAs.     

Microwave electrode discharge in nitrogen: Structure and characteristics of the electrode region

The parameters of the electrode region of an electrode microwave discharge in nitrogen are studied by emission spectroscopy. The radial and axial distributions of the intensities of the bands of the second (N₂(C ³Π _u → B ³Π _g )) and first (N₂(B ³Π _g → A ³Σ _u ⁺ )) positive systems of molecular nitrogen and the first negative system of nitrogen ions (N ₂ ⁺ (B ²Σ _u ⁺ → X ²Σ _g ⁺ )), the radial profiles of the electric field E and the electron density N _e , and the absolute populations of the vibrational levels v _C = 0–4 of the C ³Π _u excited state of N₂ and the vibrational level v _Bi = 0 of the B ²Σ _u ⁺ excited state of a molecular nitrogen ion are determined. The population temperature of the first vibrational level T _V of the ground electronic state X ¹Σ _g ⁺ of N₂ and the excitation temperature T _C of the C ³Π _u state in the electrode region of the discharge are measured. The radius of the spherical region and the spatially integrated plasma emission spectra are studied as functions of the incident microwave power and gas pressure. A method for determining the electron density and the microwave field strength from the plasma emission characteristics is described in detail.     

Hydrothermal time analysis of watermelon (<Emphasis Type="Italic">Citrullus vulgaris</Emphasis> cv. ‘Crimson sweet’) seed germination

This study evaluated the ability of a hydrothermal time model (HTT) to describe the kinetics of watermelon (Citrullus vulgaris cv. ‘Crimson sweet’) seed germination under different temperatures (T) and water potentials (ψ) and also to determine the cardinal temperatures of watermelon. Results indicated that ψ influenced germination rate and germination percentage. For this seed lot, cardinal temperatures were 10 °C for T _b, 28.34 °C for T _o and 40.8 °C for T _c in the control (0 MPa) treatment. There was a decrease in hydrotime constant (θ _H) when T was increased to T _o and then remained constant at supra-optimal temperatures (30 MPah^?1). Also, at temperatures above T _o, ψ _b(50) values increased linearly with T. The k _T value (the slope of the relationship between ψ _b(50) and T exceeds T _o) of this seed lot was calculated as 0.076 MPa°Ch^?1. Results this study show that when the HTT model is applied, it can accurately describe ψ _b(g) and the course of germination around Ts (R ² = 0.82). Moreover, the ψ _b(50) was estimated to be ?0.96 MPa based on this model. Consequently, the germination response of watermelon for all Ts and ψs can be adequately described by the HTT model and enabling it to be used as a predictive tool in watermelon seed germination simulation models.     

Diversity in growth patterns among strains of the lethal fungal pathogen <Emphasis Type="Italic">Batrachochytrium dendrobatidis</Emphasis> across extended thermal optima

The thermal sensitivities of organisms regulate a wide range of ecological interactions, including host–parasite dynamics. The effect of temperature on disease ecology can be remarkably complex in disease systems where the hosts are ectothermic and where thermal conditions constrain pathogen reproductive rates. Amphibian chytridiomycosis, caused by the pathogen Batrachochytrium dendrobatidis (Bd), is a lethal fungal disease that is influenced by temperature. However, recent temperature studies have produced contradictory findings, suggesting that our current understanding of thermal effects on Bd may be incomplete. We investigated how temperature affects three different Bd strains to evaluate diversity in thermal responses. We quantified growth across the entire thermal range of Bd, and beyond the known thermal limits (T _max and T _min). Our results show that all Bd strains remained viable and grew following 24 h freeze (?12 °C) and heat shock (28 °C) treatments. Additionally, we found that two Bd strains had higher logistic growth rates (r) and carrying capacities (K) at the upper and lower extremities of the temperature range, and especially in low temperature conditions (2–3 °C). In contrast, a third strain exhibited relatively lower growth rates and carrying capacities at these same thermal extremes. Overall, our results suggest that there is considerable variation among Bd strains in thermal tolerance, and they establish a new thermal sensitivity profile for Bd. More generally, our findings point toward important questions concerning the mechanisms that dictate fungal thermal tolerances and temperature-dependent pathogenesis in other fungal disease systems.     

Plasma diagnostics from intensities of resonance line series of He-like ions

The possibility of using the relative intensities of the 1snp ¹P₁–1s ^{2 1}S0 transitions with n = 3–6 in He-like multicharged ions to diagnose plasma in a nonstationary ionization state is considered. The calculations performed for F VIII ions show that, at electron temperatures of T _e = 10–100 eV, the intensity ratios are sensitive to the plasma electron density in the range of N _e = 10¹⁶–10²⁰ cm^–3. The universal calculated dependences can be used to diagnose various kinds of recombining or ionizing plasmas containing such ions.