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1.
Tijana Boji? Aleksandra Vuckovic Aleksandar Kalauzi 《Journal of theoretical biology》2010,262(2):214-222
Aim of this preliminary study was to examine and compare topographic distribution of Higuchi's fractal dimension (FD, measure of signal complexity) of EEG signals between states of relaxed wakefulness and drowsiness, as well as their FD differences. The experiments were performed on 10 healthy individuals using a fourteen-channel montage. An explanation is offered on the causes of the detected FD changes. FD values of 60 s records belonging to wake (Hori's stage 1) and drowsy (Hori's stages 2-4) states were calculated for each channel and each subject. In 136 out of 140 epochs an increase in FD was obtained. Relationship between signal FD and its relative alpha amplitude was mathematically modeled and we quantitatively demonstrated that the increase in FD was predominantly due to a reduction in alpha activity. The model was generalized to include other EEG oscillations. By averaging FD values for each channel across 10 subjects, four clusters (O2O1; T6P4T5P3; C3F3F4C4F8F7; T4T3) for the wake and two clusters (O2O1P3T6P4T5; C3C4F4F3F8T4T3F7) for the drowsy state were statistically verified. Topographic distribution of FD values in wakefulness showed a lateral symmetry and a partial fronto-occipital gradient. In drowsiness, a reduction in the number of clusters was detected, due to regrouping of channels T3, T4, O1 and O2. Topographic distribution of absolute FD differences revealed largest values at F7, O1 and F3. Reorganization of channel clusters showed that regionalized brain activity, specific for wakefulness, became more global by entering into drowsiness. Since the global increase in FD during wake-to-drowsy transition correlated with the decrease of alpha power, we inferred that increase of EEG complexity may not necessarily be an index of brain activation. 相似文献
2.
Protein surface roughness accounts for binding free energy of Plasmepsin II‐ligand complexes
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Mario E. Valdés‐Tresanco Mario S. Valdés‐Tresanco Pedro A. Valiente Germinal Cocho Ricardo Mansilla J.M. Nieto‐Villar 《Journal of molecular recognition : JMR》2018,31(1)
The calculation of absolute binding affinities for protein‐inhibitor complexes remains as one of the main challenges in computational structure‐based ligand design. The present work explored the calculations of surface fractal dimension (as a measure of surface roughness) and the relationship with experimental binding free energies of Plasmepsin II complexes. Plasmepsin II is an attractive target for novel therapeutic compounds to treat malaria. However, the structural flexibility of this enzyme is a drawback when searching for specific inhibitors. Concerning that, we performed separate explicitly solvated molecular dynamics simulations using the available high‐resolution crystal structures of different Plasmepsin II complexes. Molecular dynamics simulations allowed a better approximation to systems dynamics and, therefore, a more reliable estimation of surface roughness. This constitutes a novel approximation in order to obtain more realistic values of fractal dimension, because previous works considered only x‐ray structures. Binding site fractal dimension was calculated considering the ensemble of structures generated at different simulation times. A linear relationship between binding site fractal dimension and experimental binding free energies of the complexes was observed within 20 ns. Previous studies of the subject did not uncover this relationship. Regression model, coined FD model, was built to estimate binding free energies from binding site fractal dimension values. Leave‐one‐out cross‐validation showed that our model reproduced accurately the absolute binding free energies for our training set (R2 = 0.76; <|error|> =0.55 kcal/mol; SDerror = 0.19 kcal/mol). The fact that such a simple model may be applied raises some questions that are addressed in the article. 相似文献
3.
Background
Despite a consensus emerging that affirms that shorter epochs should be used in youth to correctly register physical activity levels in free-living conditions, little is known about its effect on children’s physical activity conducted in structured periods of time. This study analyzed the effect that epoch length (1, 2, 3, 5, 10, 15, 30 and 60s) may have on different physical activity intensities in physical education lessons.Methods
A sample of 1912 individual measures of physical education lessons were measured with a GT3X accelerometer. Data were collected from 1227 Swiss Elementary school students recruited in 17 elementary schools. PE lessons lasted from 45 minutes to one and a half hours. Data, originally collected in 1-s epoch, were then reintegrated into 2s, – 3s – 5s – 10s – 15s – 30s –60s epochs.Results
Longer epochs were associated with higher levels of light (F = 8197.6, p < .001), moderate (F = 2708.17, p < .001), and moderate-to-vigorous physical activity (F = 888.08, p < .001). However, longer epochs showed lower levels of sedentary activity (F = 31714.33, p < .001) and vigorous physical activity (F = 1910.97, p < .001). Bias increased in all PA intensities when shorter epochs were compared with longer epochs. There were statistically significant differences in compliance with physical education guidelines (χ2 = 989.27, p<.001), showing higher levels with longer epochs.Conclusion
PA context may have some influence on the effects that epoch length have on PA estimates, more specifically on MVPA. Nevertheless, the use of a high-frequency sampling interval should be used to more accurately assess children’s PA. 相似文献4.
Adriana M. Candela Guillermo H. Cassini Norma L. Nasif 《Lethaia: An International Journal of Palaeontology and Stratigraphy》2013,46(3):369-377
In this work, we analyse cheek teeth crown complexity through the calculation of fractal dimension in the giant caviomorph rodent Eumegamys paranensis (Late Miocene of Argentina) and evaluate its functional significance. Our results indicate that, in all teeth of Eumegamys paranensis, the fractal dimension was around 1.5, similar to the Koch quadratic curve type two. The anterior portions of the molars, with the highest values of fractal dimension, are interpreted as areas that supported greater occlusal pressures. Crown complexity in E. paranensis is related to the increased mechanical capacity to process relatively demanding food items and to allow more food to be divided in each masticatory cycle. Eumegamys paranensis would have been a mixed feeder, consuming a variable diet obtained close to the ground. This feeding behaviour is compatible with the heterogeneous environment inferred for the Mesopotamic area during the Late Miocene. E. paranensis was probably a wide ranging species, being able to eat close to water bodies and in gallery forests that occurred in the surrounding of the pre‐Paraná river system. 相似文献
5.
Anne C. Lang Werner H?rdtle Helge Bruelheide Wenzel Kr?ber Matthias Schr?ter Henrik von Wehrden Goddert von Oheimb 《Ecological Research》2012,27(1):181-189
The aim of this study was to analyse the relation of horizontal and vertical canopy structure to tree functional diversity
of a highly diverse subtropical broad-leaved slope forest, stratified for different successional stages. This is of particular
interest because many key ecosystem processes and functions are related to the arrangement of forest canopies. We assessed
the effect of stand-related functional diversity (FDQ, measured as Rao’s quadratic entropy of leaf traits), together with other environmental variables on horizontal [measured
as relative crown projection areas (CPAr)] and vertical [relative crown overlap, coefficients of variation (CV) of crown positioning variables] structure of the upper
canopy at the local neighbourhood level. The analyses with mixed effects models revealed a negative relation (p = 0.025; estimate −0.07) between FDQ and CPAr. No significant effect of FDQ on vertical canopy structure has been found (p > 0.05). The findings are discussed with regard to resource partitioning and niche differentiation of canopy and sub-canopy
species. Successional stage positively impacted the CV of crown length (p = 0.019; estimate 0.03) but did not affect other response variables. The sloping terrain strongly influenced vertical canopy
structure as revealed by the significant effect of slope inclination on CV of crown length (p = 0.004; estimate −0.05) and of slope aspect on CV of mean crown height (p = 0.036; estimate −0.03). The high complexity of vertical crown positioning depending on the heterogeneous sloping terrain
of the study area may have obscured relations of FDQ to vertical canopy structure. 相似文献
6.
7.
David J. Peterman Christopher C. Barton 《Lethaia: An International Journal of Palaeontology and Stratigraphy》2019,52(1):77-90
The spatial scaling of 77 hemisutures from 65 species of Cretaceous heteromorphic ammonites was quantified with the fractal box‐counting method. Fractal dimensions within Baculites compressus did not significantly differ between adult hemisutures; however, the juvenile suture of this species did exhibit a significantly lower fractal dimension. This suggests that variation in sutural complexity between explicitly adult ontogenetic stages may not contribute to significant noise in comparisons between other species/morphotypes. High‐spired, three‐dimensionally coiled heteromorphs with a larger degree of septal asymmetry exhibit higher fractal dimensions in outer whorl hemisutures than inner whorl hemisutures due to their elongation and improved space occupation over a larger whorl surface. Three‐dimensionally coiled ammonites also have higher fractal dimensions on average (mean Db = 1.45) with respect to their 2‐D coiled counterparts (mean Db = 1.38). All ammonites in this study exhibit a positive trend between sutural complexity and shell size (proxied by whorl height). These relationships suggest that septal frilling is constrained by shell morphology and whorl section geometry during septal morphogenesis. This, in turn, influences the scaling, space‐filling properties and scaling limits of ammonitic suture patterns. Sutural/septal complexity is also found to positively influence the amount of liquid retained in marginal septal recesses. However, as these septa approach larger scales, less cameral liquid is retained per septal mass. This may further explain the positive relationship between sutural complexity and shell size. 相似文献
8.
Background
A prominent theoretical explanation for 3/4-power allometric scaling of metabolism proposes that the nutrient exchange surface of capillaries has properties of a space-filling fractal. The theory assumes that nutrient exchange surface area has a fractal dimension equal to or greater than 2 and less than or equal to 3 and that the volume filled by the exchange surface area has a fractal dimension equal to or greater than 3 and less than or equal to 4. 相似文献9.
Barcodes for genomes and applications 总被引:1,自引:0,他引:1
Background
Each genome has a stable distribution of the combined frequency for each k-mer and its reverse complement measured in sequence fragments as short as 1000 bps across the whole genome, for 1<k<6. The collection of these k-mer frequency distributions is unique to each genome and termed the genome's barcode. 相似文献10.
Background
High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing applications, de novo assembly of moderate size genomes from such reads remains a significant challenge. These limitations could be partially overcome by utilizing mate pair technology, which provides pairs of short reads separated by a known distance along the genome. 相似文献11.
Environmental heterogeneity in natural ecosystems influences several parameters at the population and community levels. In
freshwater ecosystems, habitat heterogeneity can be provided by macrophyte species with different structural shapes. Previous
studies suggest that aquatic plants with more complex architectures will support higher number, biomass, and taxon richness
of macroinvertebrates than plants with simpler shape. We investigated the influence of macrophyte structural heterogeneity
(quantified by fractal dimension) and food availability (represented by epiphytic biomass) on several parameters (number of
individuals, biomass, body size distribution, taxon richness, and diversity) of the macroinvertebrate community in a Pampean
stream. Four submerged macrophyte species (Egeria densa, Elodea ernstae, Ceratophyllum demersum, and Stuckenia striata) and associated macroinvertebrates were sampled in late spring, summer, and autumn. Plants were photographed and fractal
dimension was estimated from the images by the box-counting method. Fractal dimension was independent of plant surface area
per unit of macrophyte biomass and differed significantly among species. Mean fractal dimension varied between 1.29 and 1.62,
and increased following the sequence E. densa → S. striata → E. ernstae → C. demersum. Macrophyte species with higher fractal dimension supported a greater abundance of macroinvertebrates, especially those of
small body size (500–1,000 μm); but fractal dimension was unrelated to macroinvertebrate biomass, richness, and diversity.
However, overall animal biomass was significantly associated to the epiphytic abundance. Consequently, macrophyte heterogeneity
influences macroinvertebrate density and body size distribution, while animal biomass depends on epiphytic food resources
provided by plants. 相似文献
12.
Background
Hu County is a serious hemorrhagic fever with renal syndrome (HFRS) epidemic area, with notable fluctuation of the HFRS epidemic in recent years. This study aimed to explore the optimal model for HFRS epidemic prediction in Hu.Methods
Three models were constructed and compared, including a generalized linear model (GLM), a generalized additive model (GAM), and a principal components regression model (PCRM). The fitting and predictive adjusted R2 of each model were calculated. Ljung-Box Q tests for fitted and predicted residuals of each model were conducted. The study period was stratified into before (1971–1993) and after (1994–2012) vaccine implementation epochs to avoid the confounding factor of vaccination.Results
The autocorrelation of fitted and predicted residuals of the GAM in the two epochs were not significant (Ljung-Box Q test, P>.05). The adjusted R2 for the predictive abilities of the GLM, GAM, and PCRM were 0.752, 0.799, and 0.665 in the early epoch, and 0.669, 0.756, and 0.574 in the recent epoch. The adjusted R2 values of the three models were lower in the early epoch than in the recent epoch.Conclusions
GAM is superior to GLM and PCRM for monthly HFRS case number prediction in Hu County. A shift in model reliability coincident with vaccination implementation demonstrates the importance of vaccination in HFRS control and prevention. 相似文献13.
Loliza L. F. H. Chalub Carolina C. Martins Raquel C. Ferreira Andréa M. D. Vargas 《PloS one》2016,11(2)
Objectives
Estimate the prevalence of functional dentition among Brazilian adults using four different definitions and identify associated factors.Methods
A cross-sectional study was conducted involving 9564 Brazilian adults aged 35–44 years who participated in the 2010 National Oral Health Survey. Data collection involved oral examinations and the administration of questionnaires. The following definitions were used: 1—WHO Functional Dentition (FDWHO: ≥ 20 teeth present); 2—well-distributed teeth (WDT: ≥ 10 teeth in each arch); 3 –Functional dentition classified by esthetics and occlusion (FDClass5: dentitions that sequentially exhibit at least one tooth in each arch, at least 10 teeth in each arch, all maxillary and mandibular anterior teeth, three or four premolar posterior occluding pairs [POPs], and at least one molar POP bilaterally); 4—Functional dentition classified by esthetics, occlusion and periodontal status (FDClass6: corresponds to FDClass5 with the addition of periodontal status of all sextants in the oral cavity with, at most, shallow pockets and/or clinical attachment level of 5 mm (CPI ≤ 3 and/or CAL ≤ 1). The independent variables were individual factors (gender, self-declared skin color, schooling, monthly household income, age group, self-rated treatment need, dental pain, dental appointment in the previous 12 months and dental services) and contextual factors (Municipal Human Development Index [MHDI]), Gini coefficient, fluoridated water supply and oral health coverage). Multilevel mixed-effect Poisson regression analyses were performed.Results
The prevalence of functional dentition based on the FDWHO, WDT, FDClass5 and FDClass6 definitions was 77.9%, 72.9%, 42.6% and 40.3%, respectively. Adults with ≥12 years of schooling and monthly household income from US$ 853 to 2557 had higher prevalence rates of FDWHO (PR: 1.41 and 1.10, respectively), WDT (PR: 1.58 and 1.14, respectively), FDClass5 (PR: 2.03 and 1.27, respectively) and FDClass6 (PR: 2.15 and 1.35, respectively). These values in the final models were adjusted for gender, self-declared skin color (FDClass5), age group, self-rated treatment need (FDWHO, FDClass5 and FDClass6), dental appointment in the previous 12 months (FDWHO and WDT), dental services (FDWHO and WDT) and contextual factors. A very high MHDI and presence of fluoridated water supply were associated with higher prevalence rates of the four outcomes.Conclusions
The incorporation of the criteria of new definitions of functional dentition led to a lower prevalence rate among Brazilian adults. Striking individual and contextual inequalities were identified with regard to the four definitions analyzed, which need to be addressed through inter-sector efforts. 相似文献14.
Multidimensional scaling for large genomic data sets 总被引:1,自引:0,他引:1
Background
Multi-dimensional scaling (MDS) is aimed to represent high dimensional data in a low dimensional space with preservation of the similarities between data points. This reduction in dimensionality is crucial for analyzing and revealing the genuine structure hidden in the data. For noisy data, dimension reduction can effectively reduce the effect of noise on the embedded structure. For large data set, dimension reduction can effectively reduce information retrieval complexity. Thus, MDS techniques are used in many applications of data mining and gene network research. However, although there have been a number of studies that applied MDS techniques to genomics research, the number of analyzed data points was restricted by the high computational complexity of MDS. In general, a non-metric MDS method is faster than a metric MDS, but it does not preserve the true relationships. The computational complexity of most metric MDS methods is over O(N 2 ), so that it is difficult to process a data set of a large number of genes N, such as in the case of whole genome microarray data. 相似文献15.
Habitat complexity in aquatic systems: fractals and beyond 总被引:1,自引:0,他引:1
Despite the intensity with which ecological information involving habitat complexity has been amassed to date, much remains
to be revealed for a comprehensive understanding of the mechanics and implications of the structural complexity of habitats
and its influences on ecological communities. This review examines the multi-faceted characteristics of habitat complexity,
focusing in particular on aquatic ecosystems. Habitat complexity in aquatic systems is characterised by at least five different
traits of physical structure: (1) spatial scales, (2) diversity of complexity-generating physical (structural) elements, (3)
spatial arrangement of elements, (4) sizes of elements, (5) abundance/density of elements. Of these five traits, the concept
of fractal dimension fully encompasses only the last one; in this sense, habitat complexity is more complex than what fractal
measures represent. It is therefore important to investigate exactly which traits of habitat structure are exerting influences
on organisms/communities. We hypothesise that, where an entire range of possible fractal dimension D is considered, intermediate levels of D are most likely to be associated with the highest level of biodiversity, to which the body size spectra of assemblages would
have a close bearing. In most aquatic ecosystems, broadly two-dimensional structures of bottom substrate at the scale of 1–10 m
mean that the addition of vertical, three dimensional structures almost always implies an increase in both the ‘diversity’
and ‘abundance’ components of structural elements, resulting in more habitats being made available to organisms of different
sizes and functional designs. The conservation and management of aquatic ecosystems would be facilitated by rigorous assessments
of linkages between habitat complexity and aquatic communities, for which an integrative approach to habitat complexity seems
to offer a useful and versatile framework. 相似文献
16.
ROSS B. JENKINS 《Austral ecology》2012,37(1):44-55
Airborne laser scanning (ALS) has the potential to capture a range vegetation structural metrics, but most studies have focussed on conifer or mixed conifer‐deciduous cool‐temperate or boreal forests. This study focuses on a warm‐temperate eucalypt forest, where two epochs of ALS data, captured approximately 2 years apart, were compared with plot and transect field data collected after the second ALS epoch. Linear regression was used to compare metrics from field and ALS data, and Student's t‐tests were used to compare metrics from the two ALS epochs. Statistically significant relationships were found for tree height (R2 = 0.915; SE = 2.08 m; P < 0.01) and canopy cover (R2 = 0.508; SE = 16.4%; P < 0.01). Foliage projective cover was also significantly correlated (R2 = 0.916; SE = 4.5%; P < 0.01) at a 10‐m stratification, but not at the typically computed 2‐m stratification, because of the presence of a tall scrubby understorey. Statistically significant values were also obtained from ALS data captured 2 years earlier, although correlation was not as strong, most likely because of the greater interval between fieldwork and ALS capture. Importantly, significant agreement was found for all metrics when the two ALS epochs were compared, suggesting that the metrics are robust. 相似文献
17.
Tooth loss and its relationship with protein intake by elderly Brazilians—A structural equation modelling approach
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Objective
This study aimed at assessing the relationship between self‐perceived tooth loss and wearing dentures, on the one hand, and the consumption of protein, on the other hand, among the elderly population of Botucatu, SP. Food consumption tends to decrease with ageing, especially protein intake, and one of the causes could be the precariousness of oral health. Several risk factors associated with deficient dietary protein intake have been identified, namely greater physical dependence, reduced caloric intake and food insecurity, but no studies have analysed whether tooth loss and prostheses interfere with protein intake.Methods
An interview was conducted among 365 elderly individuals, in which we examined oral health‐related quality of life (OHRQoL) as the only latent variable, in a 24‐hour nutritional assessment dietary recall repeated 3 times, conducted in person by a trained nutritionist and also performed an analysis of nutritional needs using the Nutrition Data System Research (NDSR) Program.Results
The structural equation model, performed using Stata v.14, showed that lack of teeth (standardised coefficient [SC] = 0.21, P < .001), and prosthesis use (SC = ?0.21, P < .001) was associated with OHRQoL. Lack of teeth had a direct effect on the consumption of animal protein (SC = 0.08, P = .02), a strong total effect on animal protein intake (SC = 0.51, P = .04) and a medium effect on total protein intake (SC = 0.20, P = .03), adjusted for confounders (depression and medical problems).Conclusion
Tooth loss had a strong and significant total effect on animal protein intake and a medium effect on total protein intake among elderly Brazilians. 相似文献18.
We propose new method of assessment of histological images for medical diagnostics. 2-D image is preprocessed to form 1-D
landscapes or 1-D signature of the image contour and then their complexity is analyzed using Higuchi's fractal dimension method.
The method may have broad medical application, from choosing implant materials to differentiation between benign masses and
malignant breast tumors. 相似文献
19.
20.
Kevin G. Keenan Francisco J. Valero-Cuevas 《Biomedical signal processing and control》2008,3(2):154-162
Researchers and clinicians routinely rely on interference electromyograms (EMGs) to estimate muscle forces and command signals in the neuromuscular system (e.g., amplitude, timing, and frequency content). The amplitude cancellation intrinsic to interference EMG, however, raises important questions about how to optimize these estimates. For example, what should the length of the epoch (time window) be to average an EMG signal to reliably estimate muscle forces and command signals? Shorter epochs are most practical, and significant reductions in epoch have been reported with high-pass filtering and whitening. Given that this processing attenuates power at frequencies of interest (<250 Hz), however, it is unclear how it improves the extraction of physiologically relevant information. We examined the influence of amplitude cancellation and high-pass filtering on the epoch necessary to accurately estimate the “true” average EMG amplitude calculated from a 28 s EMG trace (EMGref) during simulated constant isometric conditions. Monte Carlo iterations of a motor-unit model simulating 28 s of surface EMG produced 245 simulations under two conditions: with and without amplitude cancellation. For each simulation, we calculated the epoch necessary to generate average full-wave rectified EMG amplitudes that settled within 5% of EMGref. For the no-cancellation EMG, the necessary epochs were short (e.g., <100 ms). For the more realistic interference EMG (i.e., cancellation condition), epochs shortened dramatically after using high-pass filter cutoffs above 250 Hz, producing epochs short enough to be practical (i.e., <500 ms). We conclude that the need to use long epochs to accurately estimate EMG amplitude is likely the result of unavoidable amplitude cancellation, which helps to clarify why high-pass filtering (>250 Hz) improves EMG estimates. 相似文献