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1.
Morphometric Analysis of Sunflower (
Helianthus annuus
L.) Achenes from Mexico and Eastern North America. Sunflower (Helianthus annuus L.) has played a major role in the evolution of agricultural systems in the Americas. The discovery of ancient domesticated
remains from archaeological deposits in pre-Columbian Mexico offers new dimensions to widely accepted viewpoints on the domestication
pattern of H. annuus. Although American sunflower populations north of Mexico have been examined extensively, Mexican indigenous domesticated
landraces have not been studied in any detail. In this study, we morphologically assessed wild and domesticated sunflower
achenes from Mexico and compared them to similar datasets from eastern North America. Additionally, we evaluated the utility
of four computer-assisted shape measurements in discriminating between wild and domesticated sunflower achenes (fruits) and
compared variation in achene size among modern wild and cultivated populations from both Mexico and the U.S. We found that,
of the shape parameters tested, none were informative in distinguishing wild achenes from domesticated varieties. Subsequent
size analysis, using conventional parameters of length, width, and thickness, showed that modern wild populations from Mexico
had smaller achenes compared to modern populations from eastern North America. Domesticated achenes unearthed from Mexican
archaeological sites, however, were significantly larger than the early domesticated specimens recovered from eastern North
America. Our methodological results indicate that variation in archaeological sunflower achenes is better described by conventional
size parameters rather than computerized shape analysis. 相似文献
2.
3.
A study of morphological variation patterns in three Iberian Fucus species has been carried out. Data on 36 features from 113 specimens have been studied by numerical methods (PCA, discriminant analysis and ANOVA).The PCA ordination displayed a continuous trend of variation in the following Fucus species: F. ceranoides, F. vesiculosus and F. spiralis. However, no obvious morphological discontinuities have been observed. In addition, three varieties of F. spiralis and five of F. vesiculosus have been identified.At the varietal level discriminant functions could be used for identifying 93–100% of the individuals within F. vesiculosus and 72–91% of F. spiralis.The most discriminating diagnostic character appeared to be the midrib size, as detected by ANOVA procedures.Some qualitative characters, such as presence of vesicles, dioecious-monoecious character and receptacle edge shape, frond and receptacle shape, have been also important for discriminating specific and infraspecific taxa.A nomenclatural discussion of varietal taxa is also included. 相似文献
4.
Objective: The discrimination of hyperchromatic crowded cell groups (HCCGs) in cervical cytology is a difficult and error‐prone interpretive task. While the classic features of dyskaryosis are of undoubted value, the contribution of size, shape and colour intensity of HCCGs is less certain. This study employed morphometric analysis to determine whether HCCG area, shape and colour intensity are useful in categorising them. Methods: Seventy‐five digital images from each of six categories of HCCG were subjected to image analysis. Ten variables relating to HCCG size, shape and colour intensity were assessed by discriminant function analysis. A further 28 cases were employed as a test set to determine the classification accuracy of the discriminant model. All samples were SurePath liquid‐based cytology preparations. Results: Nine of the 10 variables contributed significantly to the model (P < 0.001) but no single variable had sufficient discriminative ability. Classification accuracy was highest for abnormal endocervical HCCGs and lowest for squamous metaplastic cells (64.0 vs. 17.3% correct classification rate). The accuracy of the model for distinguishing normal and abnormal HCCGs was 70.0%, which was significantly higher than chance (P < 0.0001), but this reduced to 64.3% for the test cases, which was no better than chance (P > 0.05). Conclusions: The area, shape and colour intensity of HCCGs, either alone or in combination, have little discriminative value. Practitioners and trainers should focus on the well‐established features of dyskaryosis, such as chromatin pattern, nuclear membrane irregularities and group architecture. In terms of morphometric analysis, DNA ploidy and chromatin texture analysis may be more fruitful avenues of investigation. 相似文献
5.
S. Nikolakakis P. Bossier G. Kanlis K. Dierckens D. Adriaens 《Journal of fish biology》2014,84(1):206-224
This study established an optimized protocol for quantifying the shape variation of newly hatched larvae of European seabass Dicentrarchus labrax, focusing on the effect of fixatives and mounting on body shape from hatching until 14 days post hatching, while also minimizing the error introduced by handling. This assessment was performed based on both biometric and geometric shape data, with the latter relying on outline based elliptic Fourier analysis. The fixation and mounting effect on the total length and shape of newly hatched larvae of D. labrax was tested for four fixation treatments: (1) 8% formalin, (2) 70% ethanol, (3) 8% formalin for 48 h and then to 70% ethanol and (4) 3% phosphate‐buffered glutaraldehyde. The analyses showed that no significant size and shape effect was observed on anaesthetized specimens 5 months post‐fixation in glutaraldehyde, and that the glycerol mounting process of specimens fixed in glutaraldehyde provided the best results for further ontogenetic qualitative and quantitative analysis. The protocol proved to be sufficiently sensitive to even quantify and visualize subtle pre‐fixation shape differences originating from a different egg batch. 相似文献
6.
Bing-Run Zhu Chris J. Hassell Yvonne I. Verkuil Tómas G. Gunnarson Jos C. E. W. Hooijmeijer 《Bird Study》2020,67(1):45-52
ABSTRACT Capsule: Black-tailed Godwits Limosa limosa show sexual size dimorphism and size differences between the subspecies. The shape varies slightly between the subspecies, but not between the sexes. Aims: To investigate whether and how the three subspecies of Black-tailed Godwits, and the sexes of these subspecies, differ in size and shape. Methods: We collected body dimensions (lengths of the bill, total head, tarsus, tarsus-toe and wing) of adult Black-tailed Godwits from three locations (Iceland, the Netherlands and northwest Australia) corresponding to the breeding or wintering grounds of three known subspecies (islandica, limosa and melanuroides, respectively). Determining sex by molecular assays, we computed degrees of sexual size dimorphism. Using principal component analysis (PCA), we compared differences in size and shape among the different subspecies. Results: The limosa subspecies was the largest and also showed the most significant sexual size dimorphism. Sexual size dimorphism was smallest for wing length and largest for bill length. The first two axes of the PCA that included all subspecies of both sexes explained 94% of the total variation. Most body dimensions were highly correlated with each other, but wing length varied independently of the other dimensions. Males and females differed only in size (the first axis). However, one of the two small subspecies, islandica, also differed in shape (the second axis) from limosa and melanuroides. Conclusions: In all three subspecies of Black-tailed Godwits, females are larger than males. The fact that subspecies differed in the degree of size dimorphism and slightly in shape hints at sex-related differences in the ecological selection pressures between the different flyways. 相似文献
7.
DALE A. SPRINGER RICHARD K. BAMBACH 《Lethaia: An International Journal of Palaeontology and Stratigraphy》1985,18(3):181-198
Studies in modern ecology indicate that most species are distributed independently along environmental gradients according to their individual requirements. Steep gradients often produce species associations separated by discontinuities; gradual gradients produce broadly-overlapping distributions. Approaching the distribution of species populations as a continuum, using gradient analysis, avoids artificial subdivision of totally intergrading distributions, yet permits discontinuities to emerge where present. Faunas of the Martinsburg Formation (Ordovician) in southwestern Virginia offer an excellent opportunity to test the applicability of gradient analysis in a paleoecological setting. A broad spectrum of environments, from nearshore to open-marine, clastic to carbonate-dominated facies, provide both temporal and geographic variation against which to evaluate changes in species distributions. Variations of five classical, Petersen-type communities were recognized in the Martinsburg using cluster analysis: (1) Lingula, (2) bivalve, (3) Rafinesquina, (4) Onniella, and (5) Sowerbyella-dominated communities. Two gradient analysis techniques, ordination and Markov analysis, revealed the same basic associations. However, ordination and Markov analysis permit arrangement of these associations along one or more interpreted environmental gradients. Factors related to water depth and distance from clastic source areas, particularly bottom stability and disturbance frequency, appear to have been the most important of a complex of interrelated physical parameters. The high-stress, nearshore end of the Martinsburg gradient complex was occupied by a Lingula association, followed seaward by an association of bivalves adapted to less-stressed environments. Low-stress, open-shelf environments were occupied by Rafines-quina, Onniella, or Sowerbyella-dominated associations. Broad overlaps among these articulate brachio-pod associations reflect variations in the open-shelf habitat. 相似文献
8.
《IRBM》2021,42(5):353-368
ObjectivesSchizophrenia (SZ) is the most chronic disabling psychotic brain disorder. It is characterized by delusions and auditory hallucinations, as well as impairments in memory. Schizoaffective (SA) signs are co-morbid with SZ and are characterized by symptoms of SZ and mood disorder. Various researches suggest that SZ and SA share a number of equally severe cognitive deficits, but the pathophysiology has not yet been addressed in a comprehensive way. In this work, the heterogeneity in whole brain, ventricle and cerebellum region from psychotic MR brain images is examined using Machine learning and radiomic features.Materials and methodsT1 weighted MR brain images are obtained from Schizconnect database for the analysis. The shape prior level set method is used to segment the ventricle and cerebellum structures. The radiomic features which include shape and texture are extracted from these regions to discriminate the SZ and SA subjects. The performance of these features is evaluated with Binary Particle Swarm Optimization (BPSO) based Fuzzy Support Vector Machine (FSVM) classifier.ResultsThe shape constrained Level Set method is able to better segment ventricles and cerebellum regions from the images. The significant features that are extracted from whole brain, ventricle and cerebellum are identified by the BPSO based FSVM. The combination of radiomic features extracted from cerebellum region achieved high classification accuracy (90.09%) using metaheuristic algorithm. The extracted features from cerebellum are correlated with PANSS score. The causal analysis shows that there is an association been the tissue texture variation in identifying the disease severity. The symmetry analysis shows that left brain mean area is larger than the right side area. In particular SA has low cerebellum area compared to SZ. The radiomic features such as Hermite, Laws and tensor extracted from the left cerebellum show a significant texture variation in all the considered subjects (p<0.0001).ConclusionsThe results are clinically relevant in discriminating the pattern change in the structure, hence this biomarker and frame work could be used for the severity study of psychotic disorders. 相似文献
9.
Eidi Kikuchi Sebastían García Paulo Alberto Silva da Costa Luis Gustavo Cardoso Manuel Haimovici 《Journal of fish biology》2021,98(2):548-556
Otolith shape analysis is a powerful method for fish stock identification. We compared the otolith shape of Pagrus pagrus (Linnaeus 1758) along with its distribution in four south-western Atlantic regions where it is commercially fished: Rio de Janeiro, Rio Grande do Sul in southern Brazil, the Argentine-Uruguayan Common Fishing Zone (UA) and the Argentinian Exclusive Fishing Zone (AR). Otolith shapes were compared by Elliptical Fourier and Wavelet coefficients among specimens in a size range with similar otoliths, morphometric parameters and ages. Four potential stocks were identified: one in the AR, a second along the UA which included specimens from southern Brazil with well-marked opaque bands in its otoliths (MRS), the third in southern Brazil with faint or absent opaque bands in its otoliths (FRS) and the fourth along Rio de Janeiro. The difference in the otolith shape among regions followed differences reported using other stock identification techniques. The similarity between otoliths from UA and MRS (ANOVA-like, P > 0.01) can be explained by seasonal short-range migrations. Otoliths shape differences between MRS and FRS (ANOVA-like, P < 0.01) suggest that P. pagrus does not form a homogeneous group in southern Brazil. 相似文献
10.
Enrico Feoli 《Plant biosystems》2013,147(1-2):87-96
Abstract On the use of characteristic specific combination to compare vegetational types. – A comparison between ordination and classification of phyto-sociological types using synthetic tables and characteristic specific combination of Raabe was made. The results of classification and ordination are very similar in both the cases, so that we can propose the characteristic specific combination of Raabe as a good method to limit the number of species when the vegetational types have to be classified. 相似文献
11.
Shuji Kobayashi 《Primates; journal of primatology》1995,36(1):101-120
Examinations of 23 forms ofCallicebus were made to elucidate their phylogenetic relationships based on cranial measurements. Multivariate statistical methods of
distance analysis utilizing Q-mode correlation coefficients and principal component analysis were employed. As a result, the
following five distinct groups were recognized morphometrically among the 23 species and subspecies: theDonacophilus, Cupreus, Moloch, Personatus, andTorquatus groups. Moreover, the phenetic characters of cranial size, karyotype, pelage coloration, and geographic range were consistent
with the results of this group classification. It could be safely concluded therefore that these groups represented phylogenetically
independent groups, in view of the fact that the rate of character differentiation was not appreciably different among closely
related groups. Of the five groups, thePersonatus andTorquatus groups were respectively considered to maintain a higher peculiarity of character differentiation within theCallicebus phylogeny, since these two groups individually displayed the higher magnitudes of differentiation in both their craniometric
shape and some phenetic features. Conversely, the other three groups were considered to be closer to each other in theCallicebus phylogeny. 相似文献
12.
Eitimad H. Abdel-Rahman Peter J. Taylor Giancarlo Contrafatto Jennifer M. Lamb Paulette Bloomer Christian T. Chimimba 《Mammalian Biology》2009,74(5):361-373
Non-geographic morphometric variation, particularly at the level of sexual dimorphism and ontogenetic (age-related) variation, has been documented in rodents, and useful for establishing whether to analyse sexes separately or together, and for selecting adult specimens for subsequent data recording and analysis. However, such studies have largely been based on traditional morphometric analyses of linear measurements that mainly focus on overall size, rather than shape-related morphometric variation. Unit-free, landmark/outline-based geometric morphometric analyses are considered to offer a more appropriate tool for assessing shape-related morphometric variation. In this study, we used geometric cranial morphometric analysis to assess the nature and extent of sexual dimorphism and age variation within the Tete veld rat, Aethomys ineptus (Thomas and Wroughton, 1908) from southern Africa and the African Nile rat, Arvicanthis niloticus (Desmarest, 1822) from Sudan. The results obtained were in turn compared with previously published results based on independent geometric and traditional cranial morphometric data from the same sampled populations examined in the present study. While our geometric morphometric results detected statistically significant sexual dimorphism in cranial shape within Ar. niloticus only, previously published results based on traditional morphometric data failed to detect significant sexual dimorphism within this species. However, similar to previously published traditional morphometric data, our geometric morphometric results detected statistically significant age-related variation in cranial shape and size within both Ae. ineptus and Ar. niloticus, with individuals of age classes 5 and 6 being considered to represent adult specimens. Our results highlight the importance of carefully evaluating both size- and shape-related non-geographic morphometric variation prior to the analysis of geographic variation and the delineation of species. Erroneous conclusions of non-geographic variation may have implications in the interpretation of geographic and evolutionary processes that may be responsible for morphological differences at both the inter- and intra-specific levels. 相似文献
13.
Analysis of the adsorption of capsular exopolymers (EPS) from Pseudomonas sp. NCIMB 2021 to hydrophilic and hydrophobic gold surfaces was examined, in situ, using Fourier transform infrared spectroscopy. The molecular sequence of events occurring upon EPS adsorption to hydrophilic and hydrophobic surfaces has been elucidated using dynamic 2D‐FTIR correlation spectroscopy. This method of analysis enables the enhancement of the resolution of overlapping spectral features and the elucidation of time‐dependent changes. The data reveal the existence of surface dependent adsorption mechanisms. At both surfaces, the aromatic tyrosyl side chains of the protein moiety displace water. This is followed by an adsorption step dominated by carboxylate groups. However, at the hydrophobic surface, the two steps are interrupted by the ingress of water back to the surface. Furthermore, the amount of neutral exopolymer present was greater at the hydrophilic surface than the hydrophobic surface. 相似文献
14.
Studies on fossil eggs and eggshells have been traditionally focused on analysis of microstructure and systematic classification, but few attempts have been made to examine the variability of eggshell characters. This work examines the variability of one diagnostic character, shape of the calcitic units, of some dinosaur eggshells by using outline shape analysis (elliptic Fourier analysis). The studied material belongs to five different oospecies of the parafamily Megaloolithidae Zhao, 1979. To test shape variation within and between oospecies, an analysis on 129 outlines was carried out and their variability was summarised by principal component analysis. We then tested if the shape of megaloolithid units changes according to size (i.e. allometry). A regression analysis between eggshell unit shape and two different size measurements (centroid size and eggshell thickness) showed that the thinnest eggshells (thickness ≤ 1 mm) have different shapes than thicker ones ( ≥ 2.5 mm). Our results stress that the variability in the shape of eggshell units in Megaloolithus oospecies is correlated to size (i.e. eggshell thickness), a phenomenon that should be then considered carefully when determining oospecies, since a single oospecies can show both a wide range of eggshell thickness and combined with different eggshell unit shapes. 相似文献
15.
ABSTRACT The morphology of the stigmatic surface and style of apricot (Prunus armeniaca L.) is described, in order to extend current knowledge of stylar and stigmatic structures. Eight apricot cultivars of different geographical origin and characterised by a different self-compatibility behaviour were analysed. Whole pistils were removed from flowers at different phenological stages. Analyses were performed on frozen-hydrated specimens by Low-Temperature SEM. Morphological observations were conducted on: stigma (shape, size and presence of exudate), stigmatic papillae (shape, size, density and distribution) and style (inner structures). A comparative study of the different apricot cultivars showed several morphological differences related to the genotype. 相似文献
16.
Daviesia ulicifolia is a widespread species that exhibits complex variation throughout its range. Using ordination and cluster analysis of morphometric characters we resolved ten terminal taxa for phylogenetic analysis. A data set including these and five closely related species was coded for a combination of morphometric and qualitative characters and analysed using parsimony. This revealed thatD. ulicifolia is paraphyletic by inclusion ofD. acicularis, D. arenaria andD. microcarpa. One terminal cluster is more similar to an outgroup species (D. arthropoda) than toD. ulicifolia and should be treated as a new species. Given recent theoretical and empirical studies showing paraphyly to be both expected and observed at species level, we propose that all existing species in this group continue to be recognised taxonomically. We suggest subdividingD. ulicifolia into several subspecies. 相似文献
17.
Jnos Podani 《植被学杂志》2006,17(1):113-117
Abstract. This article investigates whether the Braun‐Blanquet abundance/dominance (AD) scores that commonly appear in phytosociological tables can properly be analysed by conventional multivariate analysis methods such as Principal Components Analysis and Correspondence Analysis. The answer is a definite NO. The source of problems is that the AD values express species performance on a scale, namely the ordinal scale, on which differences are not interpretable. There are several arguments suggesting that no matter which methods have been preferred in contemporary numerical syntaxonomy and why, ordinal data should be treated in an ordinal way. In addition to the inadmissibility of arithmetic operations with the AD scores, these arguments include interpretability of dissimilarities derived from ordinal data, consistency of all steps throughout the analysis and universality of the method which enables simultaneous treatment of various measurement scales. All the ordination methods that are commonly used, for example, Principal Components Analysis and all variants of Correspondence Analysis as well as standard cluster analyses such as Ward's method and group average clustering, are inappropriate when using AD data. Therefore, the application of ordinal clustering and scaling methods to traditional phytosociological data is advocated. Dissimilarities between relevés should be calculated using ordinal measures of resemblance, and ordination and clustering algorithms should also be ordinal in nature. A good ordination example is Non‐metric Multidimensional Scaling (NMDS) as long as it is calculated from an ordinal dissimilarity measure such as the Goodman & Kruskal γ coefficient, and for clustering the new OrdClAn‐H and OrdClAn‐N methods. 相似文献
18.
To better understand the patterns of variability and distributions ofHemerocallis in Korea, 53 locations were visited and measurements of 19 morphological and phenological characters were taken on plants
directly from their natural habitats. For morphometric analysis, 10 plants from each of 34 populations and five herbarium
specimens ofH. middendorffii were used and the data from 12 quantitative characters was analyzed using univariate analysis. Except the littoral populations
of Cheju, Hong, Taehuksan, and Sohuksan Islands (H. hongdoensis M. Chung & S. Kang), three peninsular KoreanHemerocallis species can be recognized mainly in South Korea:H. hakuunensis Nakai (=H. micrantha Nakai, growing on southern, central, and northwestern Korea);H. thunbergii Baker (=H. coreana Nakai, found on southeastern and central Korea); andH. middendorffii Tr. et Mey. (central and northeastern Korea). Morphological and phenological features contributing to recognition of the
three groups were; color of perianth, shape of roots, shape of inflorescence, flowering time, odor, length of inflorescence,
width of the lowest bracts, length of perianth tube enclosing a ovary, width of the inner perianth lobes. Natural hybridization
seems to be rare in KoreanHemerocallis. It appears that the KoreanHemerocallis species are relatively well characterized by their distribution patterns, phenology, and habitats compared with the JapaneseHemerocallis species. 相似文献
19.
The size and shape of shells used by hermit crabs: A multivariate analysis of Clibanarius erythropus
Shell attributes such as weight and shape affect the reproduction, growth, predator avoidance and behaviour of several hermit crab species. Although the importance of these attributes has been extensively investigated, it is still difficult to assess the relative role of size and shape. Multivariate techniques allow concise and efficient quantitative analysis of these multidimensional properties, and this paper aims to understand their role in determining patterns of hermit crab shell use. To this end, a multivariate approach based on a combination of size-unconstrained (shape) PCA and RDA ordination was used to model the biometrics of southern Mediterranean Clibanarius erythropus populations and their shells. Patterns of shell utilization and morphological gradients demonstrate that size is more important than shape, probably due to the limited availability of empty shells in the environment. The shape (e.g. the degree of shell elongation) and weight of inhabited shells vary considerably in both female and male crabs. However, these variations are clearly accounted for by crab biometrics in males only. On the basis of statistical evidence and findings from past studies, it is hypothesized that larger males of adequate size and strength have access to the larger, heavier and relatively more available shells of the globose Osilinus turbinatus, which cannot be used by average-sized males or by females investing energy in egg production. This greater availability allows larger males to select more suitable shapes. 相似文献
20.
AbstractImage processing techniques, including the Analyze Particles tool offered by Fiji software and the Intensity Profile by ICY (IP-ICY), were applied in core and outcrop examples to improve characterization of autocomposite ichnofabrics. Analyze Particles gives information about particle shape and size in the studied image. This tool was applied to Chondrites assemblages in composite ichnofabrics in view of selected images of modern marine hemipelagic cores from Site U1385 of IODP Expedition 339. Differences in size, relative abundance, density and distribution of Chondrites were interpreted as related to variations within the population of Chondrites tracemakers. Intensity Profile quantifies pixel values of the infilling material of traces, proving helpful to discriminate between specimens, evaluate the horizon of colonization, and approach the penetration depth. Its application to the analysis of Zoophycos improves characterization of composite ichnofabrics from deep-sea pelagic calcilutites of the Petra Tou Romiou section (Eocene Lefkara Formation; southern Cyprus). Some suites of Zoophycos were interpreted as associated with different phases of colonization from several horizons. Moreover, it was possible to discriminate structures pertaining to different specimens, as opposed to those from the same specimen. 相似文献