Incidence and severity of injuries among juvenile crown-of-thorns starfish on Australia’s Great Barrier Reef

Coral Reefs - Outbreaks of crown-of-thorns starfish (Acanthaster spp.) represent a major threat to coral reef ecosystems throughout the Indo-Pacific, and there is significant interest in whether...     

Improved Coral Population Estimation Reveals Trends at Multiple Scales on Australia’s Great Barrier Reef

The global erosion of biodiversity presents unique challenges for identifying major changes in population dynamics, establishing their causes, and managing and conserving affected ecosystems at broad spatial scales. Adaptive learning approaches connecting different spatial scales through the transfer of hierarchical information are powerful tools to address such challenges. Here, we use a Semi-Parametric Bayesian Hierarchical (SPa-BaH) model to estimate coral cover trajectories using 16 years of a broad-scale survey on Australia’s Great Barrier Reef (GBR). The spatiotemporal variability of coral populations has been considered by separating three-tiered spatial scales and allowing for alternating phases of increasing and decreasing in the estimation of their trajectories. Model estimates revealed coral cover trajectories that were highly variable according to location but that fairly consistently declined at a regional spatial scale. Notwithstanding this general trend, individual reefs within subregions in the central part of the GBR often displayed different trajectory types between sites separated by only a few hundred meters. These coral dynamics were also associated with reduced recovery rates in the Cairns and Swain subregions. Our study highlights the importance of accounting for local variation in coral cover when estimating the spatiotemporal trends in coral cover trajectories, in this case, at the GBR scale. By retaining information at different hierarchical spatial scales, our SPa-BaH model supports better estimation of large-scale coral cover trajectories. The quantitative approaches developed here can also be applied to other species with complex dynamics thereby enhancing estimations of their trajectories at local- and larger-scales and options for their management.     

Temporal consistency in background mortality of four dominant coral taxa along Australia’s Great Barrier Reef

Studies on the population and community dynamics of scleractinian corals typically focus on catastrophic mortality associated with acute disturbances (e.g., coral bleaching and outbreaks of crown-of-thorns starfish), though corals are subject to high levels of background mortality and injuries caused by routine and chronic processes. This study quantified prevalence (proportion of colonies with injuries) and severity (areal extent of injuries on individual colonies) of background mortality and injuries for four common coral taxa (massive Porites, encrusting Montipora, Acropora hyacinthus and branching Pocillopora) on the Great Barrier Reef, Australia. Sampling was conducted over three consecutive years during which there were no major acute disturbances. A total of 2276 adult colonies were surveyed across 27 sites, within nine reefs and three distinct latitudinal sectors. The prevalence of injuries was very high (>83%) across all four taxa, but highest for Porites (91%) and Montipora (85%). For these taxa (Montipora and Pocillopora), there was also significant temporal and spatial variation in prevalence of partial mortality. The severity of injuries ranged from 3% to more than 80% and varied among coral taxa, but was fairly constant spatially and temporally. This shows that some injuries have considerable longevity and that corals may invest relatively little in regenerating tissue over sites of previous injuries. Inter-colony variation in the severity of injury also had no apparent effect on the realized growth of individual colonies, suggesting that energy diverted to regeneration has a limited bearing on overall energetic allocation, or impacts on other life-history processes (e.g., reproduction) rather than growth. Establishing background levels of injury and regeneration is important for understanding energy investment and life-history consequences for reef-building corals as well as for predicting susceptibility to, and capacity to recover from, acute disturbances.     

Assessing loss of coral cover on Australia’s Great Barrier Reef over two decades, with implications for longer-term trends

While coral reefs in many parts of the world are in decline as a direct consequence of human pressures, Australia’s Great Barrier Reef (GBR) is unusual in that direct human pressures are low and the entire system of ~2,900 reefs has been managed as a marine park since the 1980s. In spite of these advantages, standard annual surveys of a large number of reefs showed that from 1986 to 2004, average live coral cover across the GBR declined from 28 to 22%. This overall decline was mainly due to large losses in six (21%) of 29 subregions. Declines in live coral cover on reefs in two inshore subregions coincided with thermal bleaching in 1998, while declines in four mid-self subregions were due to outbreaks of predatory starfish. Otherwise, living coral cover increased in one subregion (3%) and 22 subregions (76%) showed no substantial change. Reefs in the great majority of subregions showed cycles of decline and recovery over the survey period, but with little synchrony among subregions. Two previous studies examined long-term changes in live coral cover on GBR reefs using meta-analyses including historical data from before the mid-1980s. Both found greater rates of loss of coral and recorded a marked decrease in living coral cover on the GBR in 1986, coinciding exactly with the start of large-scale monitoring. We argue that much of the apparent long-term decrease results from combining data from selective, sparse, small-scale studies before 1986 with data from both small-scale studies and large-scale monitoring surveys after that date. The GBR has clearly been changed by human activities and live coral cover has declined overall, but losses of coral in the past 40–50 years have probably been overestimated.     

Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200?km

Many species demonstrate variation in life history attributes in response to gradients in environmental conditions. For fishes, major drivers of life history variation are changes in temperature and food availability. This study examined large-scale variation in the demography of four species of butterflyfishes (Chaetodon citrinellus, Chaetodon lunulatus, Chaetodon melannotus, and Chaetodon trifascialis) between two locations on Australia’s Great Barrier Reef (Lizard Island and One Tree Island, separated by approximately 1,200 km). Variation in age-based demographic parameters was assessed using the re-parameterised von Bertalanffy growth function. All species displayed measurable differences in body size between locations, with individuals achieving a larger adult size at the higher latitude site (One Tree Island) for three of the four species examined. Resources and abundances of the study species were also measured, revealing some significant differences between locations. For example, for C. trifascialis, there was no difference in its preferred resource or in abundance between locations, yet it achieved a larger body size at the higher latitude location, suggesting a response to temperature. For some species, resources and abundances did vary between locations, limiting the ability to distinguish between a demographic response to temperature as opposed to a response to food or competition. Future studies of life histories and demographics at large spatial scales will need to consider the potentially confounding roles of temperature, resource usage and availability, and abundance/competition to disentangle the effects of these environmental variables.     

Coral Reefs on the Edge? Carbon Chemistry on Inshore Reefs of the Great Barrier Reef

While increasing atmospheric carbon dioxide (CO₂) concentration alters global water chemistry (Ocean Acidification; OA), the degree of changes vary on local and regional spatial scales. Inshore fringing coral reefs of the Great Barrier Reef (GBR) are subjected to a variety of local pressures, and some sites may already be marginal habitats for corals. The spatial and temporal variation in directly measured parameters: Total Alkalinity (TA) and dissolved inorganic carbon (DIC) concentration, and derived parameters: partial pressure of CO₂ (pCO₂); pH and aragonite saturation state (Ω_ar) were measured at 14 inshore reefs over a two year period in the GBR region. Total Alkalinity varied between 2069 and 2364 µmol kg⁻¹ and DIC concentrations ranged from 1846 to 2099 µmol kg⁻¹. This resulted in pCO₂ concentrations from 340 to 554 µatm, with higher values during the wet seasons and pCO₂ on inshore reefs distinctly above atmospheric values. However, due to temperature effects, Ω_ar was not further reduced in the wet season. Aragonite saturation on inshore reefs was consistently lower and pCO₂ higher than on GBR reefs further offshore. Thermodynamic effects contribute to this, and anthropogenic runoff may also contribute by altering productivity (P), respiration (R) and P/R ratios. Compared to surveys 18 and 30 years ago, pCO₂ on GBR mid- and outer-shelf reefs has risen at the same rate as atmospheric values (∼1.7 µatm yr⁻¹) over 30 years. By contrast, values on inshore reefs have increased at 2.5 to 3 times higher rates. Thus, pCO₂ levels on inshore reefs have disproportionately increased compared to atmospheric levels. Our study suggests that inshore GBR reefs are more vulnerable to OA and have less buffering capacity compared to offshore reefs. This may be caused by anthropogenically induced trophic changes in the water column and benthos of inshore reefs subjected to land runoff.     

Rapid vertical accretion on a ‘young’ shore-detached turbid zone reef: Offshore Paluma Shoals, central Great Barrier Reef, Australia

We report on the age structure and net accretion rates determined for an open water turbid zone reef, known as Offshore Paluma Shoals, located on the inner central Great Barrier Reef. Twenty-eight radiocarbon dates from 5 cores through the reef structure indicate that this reef began growing ~1,700 years ago and that net vertical accretion through the main phase of reef development was rapid (averaging 7.8 mm yr^?1), this despite the reef growing in highly turbid waters. The most rapid growth phases coincided with the accumulation of mud-rich terrigenoclastic sediments within the reef fabric. The study emphasises the capacity of turbid zone reefs to vertically accrete at rates matching or exceeding many clear water reefs despite seemingly detrimental water quality conditions.     

Cross-shelf differences in the pattern and pace of bioerosion of experimental carbonate substrates exposed for 3 years on the northern Great Barrier Reef, Australia

Patterns of bioerosion of dead corals and rubbles on the northern Great Barrier Reef were studied by using blocks of the massive coral Porites experimentally exposed at six sites, located on an inshore–offshore profile, for 1 year and 3 years. Rates of microbioerosion by microborers, grazing by fish, and macrobioerosion by filter-feeding organisms were simultaneously evaluated using image analysis. Microbioerosion, grazing, and total bioerosion were lower at reefs near the Queensland coast than at the edge of the continental shelf (1.81 kg m⁻² and 6.07 kg m⁻² after 3 years of exposure respectively, for total bioerosion). The opposite pattern was observed for macrobioerosion. Bioaccretion was negligible. These patterns were evident after 1 year of exposure, and became enhanced after 3 years. Microborers were established and were the main agent of bioerosion after 1 year of exposure, and as the principal support for grazing, continued to be the main cause of carbonate loss after 3 years. Full grazing activity and establishment of a mature community of macroborers required more than 1 year of exposure. After 1 year, macroborers and grazers were the second most important agents of bioerosion on both inshore and offshore reefs. However, after 3 years, grazers became the main agents at all sites except at the inshore sites, where macroborers were the principal agents. Because the contribution of microborers, grazers, and macroborers to bioerosion varies in space and time, we suggest that the estimation of reef carbonate budgets need to take in account the activities of all bioerosion agents.     

Holocene sea level instability in the southern Great Barrier Reef,Australia: high-precision U–Th dating of fossil microatolls

Three emergent subfossil reef flats from the inshore Keppel Islands, Great Barrier Reef (GBR), Australia, were used to reconstruct relative sea level (RSL). Forty-two high-precision uranium–thorium (U–Th) dates obtained from coral microatolls and coral colonies (2σ age errors from ±8 to 37 yr) in conjunction with elevation surveys provide evidence in support of a nonlinear RSL regression throughout the Holocene. RSL was as least 0.75 m above present from ~6500 to 5500 yr before present (yr BP; where “present” is 1950). Following this highstand, two sites indicated a coeval lowering of RSL of at least 0.4 m from 5500 to 5300 yr BP which was maintained for ~200 yr. After the lowstand, RSL returned to higher levels before a 2000-yr hiatus in reef flat corals after 4600 yr BP at all three sites. A second possible RSL lowering event of ~0.3 m from ~2800 to 1600 yr BP was detected before RSL stabilised ~0.2 m above present levels by 900 yr BP. While the mechanism of the RSL instability is still uncertain, the alignment with previously reported RSL oscillations, rapid global climate changes and mid-Holocene reef “turn-off” on the GBR are discussed.

     

Biogeochemical responses following coral mass spawning on the Great Barrier Reef: pelagic–benthic coupling

This study quantified how the pulse of organic matter from the release of coral gametes triggered a chain of pelagic and benthic processes during an annual mass spawning event on the Australian Great Barrier Reef. Particulate organic matter (POM) concentrations in reef waters increased by threefold to 11-fold the day after spawning and resulted in a stimulation of pelagic oxygen consumption rates that lasted for at least 1 week. Water column microbial communities degraded the organic carbon of gametes of the broadcast-spawning coral Acropora millepora at a rate of >15% h⁻¹, which is about three times faster than the degradation rate measured for larvae of the brooding coral Stylophora pistillata. Stable isotope signatures of POM in the water column reflected the fast transfer of organic matter from coral gametes into higher levels of the food chain, and the amount of POM reaching the seafloor immediately increased after coral spawning and then tailed-off in the next 2 weeks. Short-lasting phytoplankton blooms developed within a few days after the spawning event, indicating a prompt recycling of nutrients released through the degradation of spawning products. These data show the profound effects of coral mass spawning on the reef community and demonstrate the tight recycling of nutrients in this oligotrophic ecosystem.     

Effects of Epichloë gansuensis on root-associated fungal communities of Achnatherum inebrians under different growth conditions

This study was conducted to investigate how Epichloë gansuensis endophyte and soil disturbance affect root-associated fungi (RAF) of Achnatherum inebrians (drunken horse grass, DHG), using Illumina sequencing techniques. The rhizosphere soil of wild endophyte-infected (W-EI) DHG had significantly (P < 0.05) higher available phosphorous and potassium, total organic matter, ammonium and nitrate nitrogen than cultivated soil. In addition, the rhizosphere soil of endophyte-infected DHG had significantly (P < 0.05) lower pH and nitrate nitrogen, and higher available phosphorous, than endophyte-free DHG under cultivated conditions. The sequencing provided a total of 54,413 sequences and these were assigned into 190 operational taxonomic units (OTUs) with 97% similarity. Ascomycota was the most dominant phylum in roots of three DHG populations. W-EI DHG had significantly (P < 0.05) higher RAF diversity than cultivated endophyte-infected (C-EI) DHG. The presence of endophyte significantly (P < 0.05) decreased RAF diversity under cultivation. The principal component analysis (PCA) and sample similarity analysis results indicated that both endophyte and soil disturbance could bring changes to RAF community composition. The RDA results demonstrated the RAF of W-EI DHG were positively correlated with soil properties, and the RAF of cultivated DHG roots were negatively correlated with soil properties. This study demonstrated that both endophyte and soil disturbance resulted in changes to the RAF communities.     

Resilience of Phialocephala fortinii s.l. – Acephala applanata communities – Effects of disturbance and strain introduction

Members of the Phialocephala fortinii s.l. – Acephala applanata species complex (PAC) are ubiquitous endophytes forming complex communities in roots of conifers and ericaceous shrubs across the Northern hemisphere. Two kinds of disturbances (clear-cutting and drought) and their effects on the resident PAC community, as well as on the introduction of alien strain 7_45_5, were investigated using mesocosms with natural Norway spruce (Picea abies) regeneration, both under controlled climate chamber conditions and natural conditions in the forest.This is the first record of successful strain introduction into a well-established forest ecosystem. Introduction was more successful when planting inoculated living spruce saplings, compared to inoculation using autoclaved colonized roots. 7_45_5 was less assertive in the forest, where Phialocephala subalpina clearly dominated. Clear-cutting favored A. applanata and simultaneously reduced the overall frequency of PAC. Drought only had a significant influence on 7_45_5, which was more abundant in dry than moist, non-clear-cut plots. To conclude, disturbances and arrival of foreign strains can alter resident PAC communities significantly.     

Micro-mechanical properties of different sites on woodpecker’s skull

The uneven distributed microstructure featured with plate-like spongy bone in woodpecker’s skull has been found to further help reduce the impact during woodpecker’s pecking behavior. Therefore, this work was to investigate the micro-mechanical properties and composition on different sites of Great Spotted woodpecker’s (GSW) skull. Different sites were selected on forehead, tempus and occiput, which were also compared with those of Eurasian Hoopoe (EH) and Lark birds (LB). Micro structural parameters assessed from micro computed tomography (μCT) occurred significantly difference between GSW, EH and LB. The micro finite element (micro-FE) models were developed and the simulation was performed as a compression process. The maximal stresses of GSW’s micro-FE models were all lower than those of EH and LB respectively and few concentrated stresses were noticed on GSW’s trabecular bone. Fourier transform infrared mapping suggesting a greater organic content in the occiput of GSW’s cranial bone compared with others. The nano-hardness of the GSW’s occiput was decreasing from forehead to occiput. The mechanical properties, site-dependent hardness distribution and special material composition of GSW’s skull bone are newly found in this study. These factors may lead to a new design of bulk material mimicking these characteristics.     

Effect of bêche-de-mer fishing on densities and size structure of Holothuria nobilis (Echinodermata: Holothuroidea) populations on the Great Barrier Reef

Decreasing catch rates for Holothuria nobilis (black teatfish) on the Great Barrier Reef (GBR) prompted management agencies to close the fishery for this species in October 1999. At the same time, we surveyed densities and size structure of H. nobilis populations in the main area fished on the GBR. Densities of H. nobilis on four reefs protected from fishing (approximately 20 ind. ha^-1) were about four times higher than those on 16 reefs open to fishing (approximately 5 ind. ha^-1). Each of four other reefs had been divided into an area protected from fishing and an open area. On the largest of these reefs (ca. 28 km long), densities of H. nobilis were nearly five times higher in the protected area compared to the area open to fishing. On three smaller reefs (<11 km long), however, densities were not significantly different between the open and protected area, and were similar to that on reefs completely open to fishing. The average weight of individuals was significantly reduced on fished reefs (1,763 g) compared to closed reefs (2,200 g). Thus, bêche-de-mer fishing led to a strong reduction of density and biomass of H. nobilis. The division of smaller reefs into open and closed zones appears not to provide sufficient protection, but reefs that are completely closed to fishing appear to provide some degree of protection. There were some indications that proximity to tourist attractions may enhance the effect of protection.     

Patterns and rates of erosion in dead Porites across the Great Barrier Reef (Australia) after 2 years and 4 years of exposure

Rates and agents of erosion were investigated experimentally at six sites located along a cross shelf transect from the northern Queensland coast out into the Coral Sea. Rates of internal and external erosion of coral blocks, and accretion by coralline algae were measured after 2 years and 4 years of exposure. Blocks were cut from live colonies of Porites sp., which were collected from the outer barrier reef in north Queensland. They were then washed, dried, measured, weighed and attached to grids that were firmly attached to dead coral substrate at depths of 7–10 m. Significant differences in all three parameters were found within and among sites, and rates increased with increasing duration of exposure. Inshore sites were characterized by low rates of external erosion compared to offshore sites. Agents responsible for internal erosion differed among sites, with boring sponges being most abundant on the two inshore reefs, and molluscs most abundant at the offshore sites. Deposit-feeding polychaetes were more abundant at the two inshore sites, while filter and surface deposit feeders were more common at the offshore sites. Net erosion rates varied among sites (1.090±0.499 to 7.846±3.218 kg m²), and the relative importance of the components of erosion changed markedly along the cross-shelf transect.     

Climate variation and El Niño-Southern Oscillation events on the Great Barrier Reef: 1958 to 1987

Seasonal and inter-annual variation of several surface climate variables near the Great Barrier Reef (GBR) are described for the 30-year period, 1958–1987. Large inter-annual variability of rainfall and river flow in coastal Queensland is linked to the aperiodic influences of El Niño-Southern Oscillation events. These events also affect sea surface temperature and wind fields, though the inter-annual variability of these variables is not as large as rainfall and river flow. The major impacts on waters of the GBR appear to be greatly increased freshwater inputs, reduced surface radiation (and thus light levels) and enhanced tropical cyclone activity during anti-El Niño events. El Niño events have less effect on climate of the GBR because they tend to maintain winter-like conditions. The effects of this background of high variability in the physical environment on reef processes must be considered when examining changes in such processes, changes in climate (e.g. due to global warming) or increases in anthropogenic impacts.     

Symbiont acquisition strategy drives host–symbiont associations in the southern Great Barrier Reef

Coral larvae acquire populations of the symbiotic dinoflagellate Symbiodinium from the external environment (horizontal acquisition) or inherit their symbionts from the parent colony (maternal or vertical acquisition). The effect of the symbiont acquisition strategy on Symbiodinium-host associations has not been fully resolved. Previous studies have provided mixed results, probably due to factors such as low sample replication of Symbiodinium from a single coral host, biogeographic differences in Symbiodinium diversity, and the presence of some apparently host-specific symbiont lineages in coral with either symbiont acquisition strategies. This study set out to assess the effect of the symbiont acquisition strategy by sampling Symbiodinium from 10 coral species (five with a horizontal and five with a vertical symbiont acquisition strategy) across two adjacent reefs in the southern Great Barrier Reef. Symbiodinium diversity was assessed using single-stranded conformational polymorphism of partial nuclear large subunit rDNA and denaturing gradient gel electrophoresis of the internal transcribed spacer 2 region. The Symbiodinium population in hosts with a vertical symbiont acquisition strategy partitioned according to coral species, while hosts with a horizontal symbiont acquisition strategy shared a common symbiont type across the two reef environments. Comparative analysis of existing data from the southern Great Barrier Reef found that the majority of corals with a vertical symbiont acquisition strategy associated with distinct species- or genus-specific Symbiodinium lineages, but some could also associate with symbiont types that were more commonly found in hosts with a horizontal symbiont acquisition strategy.