Flying Insect Classification with Inexpensive Sensors

The ability to use inexpensive, noninvasive sensors to accurately classify flying insects would have significant implications for entomological research, and allow for the development of many useful applications in vector control for both medical and agricultural entomology. Given this, the last sixty years have seen many research efforts on this task. To date, however, none of this research has had a lasting impact. In this work, we explain this lack of progress. We attribute the stagnation on this problem to several factors, including the use of acoustic sensing devices, the overreliance on the single feature of wingbeat frequency, and the attempts to learn complex models with relatively little data. In contrast, we show that pseudo-acoustic optical sensors can produce vastly superior data, that we can exploit additional features, both intrinsic and extrinsic to the insect’s flight behavior, and that a Bayesian classification approach allows us to efficiently learn classification models that are very robust to overfitting. We demonstrate our findings with large scale experiments, as measured both by the number of insects and the number of species considered.     

计算机在昆虫分类中的新用途

计算机作为一种昆虫分类的工具 ,已广泛用于昆虫的数值分类和支序分类中。随着多媒体计算机以及计算机网络技术的迅速发展 ,它在昆虫分类中又有了新的用途。多媒体计算机的使用将使传统的形态分类产生质的飞跃 ,并能通过互联网核对模式标本和进行昆虫种类的共同鉴定 ,使传统分类充满新的活力。     

自动识别技术在昆虫分类鉴别研究中的应用

昆虫的自动识别是重要的新兴研究领域,它以直接、快速、方便等优点日益受到人们的青睐。昆虫是世界上最大的生物类群,鉴定工作费时耗力,然而分类专家又在逐渐减少。近年来,昆虫自动识别技术的发展为解决这一矛盾提供了乐观的方案。众多分类学家不断探索自动识别的方法和理论,并开发出了一批识别软件。本文介绍自动识别的原理,分类讨论自动识别的技术和方法,并分析提出面临的困难和应对策略。     

长链非编码RNA(lncRNA)及其在昆虫学研究中的进展

长链非编码RNA（long noncoding RNA, lncRNA）是一类转录本长度超过200 nt的非编码RNA,主要通过转录调控和转录后调控调节基因的表达,也可通过影响蛋白质定位和端粒复制发挥其强大的生物学功能。本文在介绍lncRNA的特征、分类及其主要作用机制的基础上,综述了有关昆虫lncRNA的鉴定及功能研究等方面的最新进展。近5年来已经从黑腹果蝇Drosophila melanogaster、小菜蛾Plutella xylostella和褐飞虱Nilaparvata lugens等8种昆虫中鉴定出了大量lncRNA,为进一步研究lncRNA在昆虫生长发育过程中的功能奠定了重要基础。非编码RNA参与调控害虫抗药性的分子机制已经成为昆虫毒理学研究的一个新兴领域,因此本文对有关lncRNA与害虫抗药性关系的最新研究进展也做了介绍。     

改进支持向量分类用于蝶类自动鉴别

昆虫自动识别是重要的新兴研究领域, 其中特征筛选与恰当地将多分类转化为二分类是两个关键步骤。本文基于支持向量分类, 提出了一种新的多类昆虫自动鉴别方法: 先以初始样本互作转换将多分类转化为二分类, 再以可交换核函数消除互作样本中初始样本排列顺序不同的影响, 继以非线性筛选去除无关特征与冗余特征并给出各保留特征相对重要性排序, 最后以简单投票决策校正独立预测结果。新方法应用于2科7种蝶类自动鉴别, 以前翅9个翅脉交叉点距离为初始特征, 种、科阶元26、24个随机初始测试样本均获得了100%的准确鉴别。新方法在昆虫自动识别等多分类领域有广泛应用前景。     

细胞电生理技术在昆虫抗药性研究中的应用

害虫几乎对所有化学农药及Bt等生物农药都产生了抗性。离子通道是多种杀虫剂的作用靶,因此作为研究离子通道基本手段的电压钳与膜片钳技术在害虫抗性检测与抗性机理研究中越来越受到重视。该文综述了细胞电生理技术在害虫抗性机理、杀虫剂作用机理以及药物筛选中的应用。     

Resolving the identification of weak-flying insects during flight: a coupling between rigorous data processing and biology

1. Bioacoustic methods play an increasingly important role for the detection of insects in a range of surveillance and monitoring programmes.
2. Weak-flying insects evade detection because they do not yield sufficient audio information to capture wingbeat and harmonic frequencies. These inaudible insects often pose a significant threat to food security as pests of key agricultural crops worldwide.
3. Automatic detection of such insects is crucial to the future of crop protection by providing critical information to assess the risk to a crop and the need for preventative measures.
4. We describe an experimental set-up designed to derive audio recordings from a range of weak-flying aphids and beetles using an LED array.
5. A rigorous data processing pipeline was developed to extract meaningful features, linked to morphological characteristics, from the audio and harmonic series for six aphid and two beetle species.
6. An ensemble of over 50 bioacoustic parameters was used to achieve species discrimination with a success rate of 80%. The inclusion of the dominant and fundamental frequencies improved prediction between beetles and aphids because of large differences in wingbeat frequencies.
7. At the species level, error rates were minimized when harmonic features were supplemented by features indicative of differences in species' flight energies.

     

Spatially implicit approaches to understand the manipulation of mating success for insect invasion management

Recent work indicates that Allee effects (the positive relationship between population size and per capita growth rate) are critical in determining the successful establishment of invading species. Allee effects may create population thresholds, and failure to establish is likely if invading populations fall below these thresholds. There are many mechanisms that may contribute to Allee effects, but mate-location failure is a common cause in sexually reproducing insects. Consequently, mate-location failure represents a type of “weak link” that may be enhanced in order to achieve eradication of insect populations during the early stages of invasion. In this paper, spatially implicit models that account for mating behavior of both sexes are used to explore the enhancement of mate-location failure in pest eradication programs. Distinct from the previous studies, the Allee effect emerges from a mechanistic representation of mate-location failure in our model. Three specific eradication strategies, sterile insect release, mass-trapping, and mating disruption, are incorporated into the model and tested for their ability to depress population growth during the early stages of invasions. We conducted simulations with the model parameterized to represent two types of insects: Coleopteran-like insects which are long-lived and capable of multiple matings, but have low daily reproductive rates, and Lepidopteran-like insects which are capable of mating only once per generation, have an ephemeral reproductive stage, and have high reproductive rates. Simulations indicated that: (1) many insect pests are more likely to be eradicated than had been previously predicted by classic models which do not account for mate-finding difficulties, (2) for Lepidopteran-like insects, mass-trapping has the greatest potential for eradication among the three methods when a large number of traps can be installed, although mating-disruption will be the most effective if we can anticipate confusion or trail-masking mechanisms of disruption, and (3) populations of Coleopteran-like insects may be most effectively eradicated using the sterile male release method. Though more detailed models should be tailored for individual species, we expect that the spatially implicit approaches outlined in this paper can be widely adapted to study the efficiency of various eradication approaches in sparse conditions. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Automatic life-long monitoring of individual insect behaviour now possible

Automatic tracking and identification of individuals has the potential to revolutionize the study of insects, especially social insects, by opening up options for questions which could not be asked before. To achieve this we developed a reliable and cost-sensible RFID (Radio-Frequency Identification) based solution that automatically recognises a virtually unlimited number (18 x 10(18) possible ID numbers) of individual insects down to the size of bees and ants. The data are collected automatically for any desired time span (if interesting, up to the entire life of the individual), pre-processed and saved in a database for further analysis. The usage of database techniques allows parallel data processing with a virtually unlimited number of parameter connections. ID numbers can be linked to any simultaneously recorded parameters of interest, e.g. spatial and temporal information as shown here for a bumblebee colony.     

中国东北中生代时期的传粉昆虫与虫媒植物

昆虫与植物的相互作用在昆虫与植物协同进化和发展中起着至关重要的作用。化石记录中发现了昆虫取食花粉、授粉滴、访问中生代裸子植物具胚珠的繁殖器官等多方面的昆虫化石证据。20世纪90年代以来,研究和报道了大量采自中国东北地区保存良好的昆虫与植物化石。例如发表于Science上的2篇具有长喙的双翅目和长翅目昆虫化石文章,暗示着它们很可能参与各种裸子植物的授粉。在本篇文章中,作者回顾了已报道的中国东北晚中生代时期的昆虫化石,并把它们与授粉或访"花"相联系。另外,作者对采自同一层位的同时代的植物化石进行了初步研究并介绍了可能涉及到与昆虫相互作用的代表性植物。今后将进一步深入研究,以期在化石中找到昆虫授粉和访花的直接证据。     

A Simple Flight Mill for the Study of Tethered Flight in Insects

Flight in insects can be long-range migratory flights, intermediate-range dispersal flights, or short-range host-seeking flights. Previous studies have shown that flight mills are valuable tools for the experimental study of insect flight behavior, allowing researchers to examine how factors such as age, host plants, or population source can influence an insects'' propensity to disperse. Flight mills allow researchers to measure components of flight such as speed and distance flown. Lack of detailed information about how to build such a device can make their construction appear to be prohibitively complex. We present a simple and relatively inexpensive flight mill for the study of tethered flight in insects. Experimental insects can be tethered with non-toxic adhesives and revolve around an axis by means of a very low friction magnetic bearing. The mill is designed for the study of flight in controlled conditions as it can be used inside an incubator or environmental chamber. The strongest points are the very simple electronic circuitry, the design that allows sixteen insects to fly simultaneously allowing the collection and analysis of a large number of samples in a short time and the potential to use the device in a very limited workspace. This design is extremely flexible, and we have adjusted the mill to accommodate different species of insects of various sizes.     

基因组时代的昆虫学研究

昆虫种类繁多,它与生态系统中的生物多样性,以及人类的日常生活和生产密切相关。自2000年黑腹果蝇Drosophila melanogaster全基因组测序完成以来,至今已先后开展了88种昆虫全基因组测序工作,这标志着昆虫学研究进入了基因组时代。本文综述了近年来昆虫基因组测序进展,以及基于基因组的昆虫学研究方法及应用等两方面的研究成果。同时,着重介绍了昆虫全基因组测序进程,昆虫基因组在个体生物学、多物种间及种群,及系统生物学研究中的应用等方面的内容。最后,还探讨了基因组时代昆虫学研究所面临的挑战。     

昆虫共生菌的次级代谢产物研究进展

微生物与昆虫的共生是一种普遍现象,昆虫种类繁多,与昆虫共生的微生物也多种多样。昆虫共生菌是活性次生代谢产物的重要来源。本文对自2008年以来已报道的177个昆虫共生菌的次级代谢产物进行了统计和分析,结果表明:61.6%的化合物为新天然产物(生物碱类新化合物最多),其中,约75%的新化合物来源于昆虫共生真菌,25%来源于细菌;醌酮类化合物是昆虫共生菌源天然产物的主要结构类型,占23.2%;47.5%的化合物具有显著的抗肿瘤、抗菌、除草和抗氧化等生物活性,且化合物中的主要活性类型是抗菌和抗肿瘤活性,活性范围覆盖面最广的结构类型是生物碱类。以上结果表明昆虫共生菌的次级代谢产物是先导性化合物的重要来源且具有丰富的生物活性类型。本文以天然产物的结构分类为切入点,结合其研究菌株来源、生物活性等进行综述,旨在为充分挖掘昆虫共生菌次级代谢产物提供重要参考。     

昆虫定向机制研究进展

许多昆虫具有定向运动的行为。对部分社会性昆虫和迁飞性昆虫定向行为的大量研究已经初步阐明太阳、地磁场、天体、风及地面标志物等都可能成为昆虫返巢和迁飞定向的线索。社会性昆虫具有对不同定向线索进行整合而实现精确导航的能力。日间迁飞性昆虫利用时间补偿太阳罗盘进行定向的机制亦已明确,但夜间迁飞昆虫的定向机制尚需深入研究。迁飞性害虫定向机制的明确将有助于判断害虫迁飞路径及降落区域,为迁飞害虫的准确预测提供科学依据。本文对昆虫的定向机制研究进展进行了综述。     

Faunal impact on vegetation structure and ecosystem function in mangrove forests: A review

The last 20 years witnessed a real paradigm shift concerning the impact of biotic factors on ecosystem functions as well as on vegetation structure of mangrove forests. Before this small scientific revolution took place, structural aspects of mangrove forests were viewed to be the result of abiotic processes acting from the bottom-up, while, at ecosystem level, the outwelling hypothesis stated that mangroves primary production was removed via tidal action and carried to adjacent nearshore ecosystems where it fuelled detrital based food-webs. The sesarmid crabs were the first macrofaunal taxon to be considered a main actor in mangrove structuring processes, thanks to a number of studies carried out in the Indo-Pacific forests in the late 1970s and early 1980s. Following these classical papers, a number of studies on Sesarmidae feeding and burrowing ecology were carried out, which leave no doubts about the great importance of these herbivorous crabs in structuring and functioning Old world ecosystems. Although Sesarmidae are still considered very important in shaping mangrove structure and functioning, recent literature emphasizes the significance of other invertebrates. The Ocypodidae have now been shown to have the same role as Sesarmidae in terms of retention of forest products and organic matter processing in New world mangroves. In both New and Old world mangroves, crabs process large amounts of algal primary production, contribute consistently to retention of mangrove production and as ecosystem engineers, change particle size distribution and enhance soil aeration. Our understanding of the strong impact of gastropods, by means of high intake rates of mangrove products and differential consumption of propagules, has changed only recently. The role of insects must also be stressed. It is now clear that older techniques used to assess herbivory rates by insects strongly underestimate their impact, both in case of leaf eating and wood boring species and that herbivorous insects can potentially play a strong role in many aspects of mangrove ecology. Moreover, researchers only recently realized that ant–plant interactions may form an important contribution to our understanding of insect–plant dynamics in these habitats. Ants seem to be able to relieve mangroves from important herbivores such as many insects and sesarmid crabs. It thus seems likely that ants have positive effects on mangrove performance.     

植食性昆虫唾液效应子和激发子的研究进展

植食性昆虫与寄主植物通过协同进化形成了复杂的防御和反防御机制.本文系统综述了昆虫唾液效应子和激发子在植物与昆虫互作中的作用及机理.昆虫取食中释放的唾液激发子被植物识别而激活植物早期免疫反应,昆虫也能从口腔分泌效应子到植物体内抑制免疫;抗性植物则利用抗性(R)蛋白识别昆虫无毒效应子,启动效应子诱导的免疫反应,而昆虫又进化...     

Edible insects in China: Utilization and prospects

The use of edible insects has a long history in China, where they have been consumed for more than 2000 years. In general, the level of acceptance is high for the consumption of insects in China. Many studies on edible insects have been conducted in the last 20 years, and the scope of the research includes the culture of entomophagy and the identification, nutritional value, farming and breeding of edible insects, in addition to food production and safety. Currently, 324 species of insects from 11 orders are documented that are either edible or associated with entomophagy in China, which include the common edible species, some less commonly consumed species and some medicinal insects. However, only approximately 10 to 20 types of insects are regularly consumed. The nutritional values for 174 species are available in China, including edible, feed and medicinal species. Although the nutritional values vary among species, all the insects examined contain protein, fat, vitamins and minerals at levels that meet human nutritional requirements. Edible insects were, and continue to be, consumed by different ethnic groups in many parts of China. People directly consume insects or food products made from insects. The processing of products from insect protein powder, oil and chitin, and the development of healthcare foods has been studied in China. People also consume insects indirectly by eating livestock that were fed insects, which may be a more acceptable pathway to use insects in human diets. Although limited, the data on the food safety of insects indicate that insects are safe for food or feed. Incidences of allergic reactions after consuming silkworm pupae, cicadas and crickets have been reported in China. Insect farming is a unique breeding industry in rural China and is a source of income for local people. Insects are reared and bred for human food, medicine and animal feed using two approaches in China: the insects are either fully domesticated and reared completely in captivity or are partially raised in captivity, and the insect habitat is manipulated to increase production. Depending on the type of relationship the insect has with humans, plants and the environment, different farming strategies are used. The social and scientific communities must work together to promote the use of insects as food and feed.     

社会性昆虫级型和行为分化机制研究进展

社会性的出现是生物演化过程中的重要革新, 理解社会性的演化和调控机制具有重要的理论和实际意义。社会性昆虫的个体间有着明显的级型分化和劳动分工, 这有利于它们适应复杂的环境变化。理解社会性昆虫如何产生不同的形态、行为和生活史特性, 一直是进化和发育生物学的重要目标。随着测序技术的不断更新及生物信息学的快速发展, 已经有众多关于社会性昆虫级型和行为分化机制的研究报道。本文通过整理社会性昆虫研究的已有成果, 从环境因素、生理调控和分子机制等方面对社会性昆虫级型和行为分化机制相关研究进展进行了综述, 并对未来的研究方向做出了展望。根据现有证据, 社会性昆虫所生活的生物环境(食物营养、信息素、表皮碳氢化合物)和非生物环境(温度、气候等)均能直接或间接影响社会性昆虫级型和行为的分化; 保幼激素、蜕皮激素、类胰岛素及生物胺等内分泌激素和神经激素对社会性昆虫的级型和行为分化也有重要的调控作用; 此外, 遗传因素、新基因等DNA序列或基因组结构上的变化以及表观遗传修饰、基因的差异表达等基因调控机制均能不同程度地影响社会性昆虫的行为分化。本文建议加强昆虫纲其他社会性类群如半翅目蚜虫和缨翅目蓟马等的社会性行为及其演化机制的研究, 以加深对社会性昆虫起源及其行为演化的理解和认识。     

Feature selection for the prediction of translation initiation sites

Translation initiation sites （TISs） are important signals in cDNA sequences. In many previous attempts to predict TISs in cDNA sequences, three major factors affect the prediction performance： the nature of the cDNA sequence sets, the relevant features selected. and the classification methods used. In this paper, we examine different approaches to select and integrate relevant features for TIS prediction. The top selected significant features include the features from the position weight matrix and the propensity matrix, the number of nucleotide C in the sequence downstream ATG, the number of downstream stop codons. the number of upstream ATGs, and the number of some amino acids, such as amino acids A and D. With the numerical data generated from these features, different classification methods, including decision tree. naive Bayes, and support vector machine, were applied to three independent sequence sets. The identified significant features were found to be biologically meaningful. while the experiments showed promising results.