Importance of high quality early-successional habitats in managed forest landscapes to rare beetle species

Species adapted to early-successional forest habitats are in managed landscapes largely confined to clearcuts. To improve habitat quality on clearcuts, green tree and dead wood retention is widely applied in forestry; however, its effects on rare early-successional species have rarely been shown. We repeatedly surveyed two red-listed beetle species (Upis ceramboides and Platysoma minus) on clearcuts in a managed boreal forest landscape. We found that U. ceramboides decreased its occupancy over time while P. minus increased, indicating that red-listed species vary in their ability to successfully utilise managed habitats. We found no effect of connectivity on probability of occurrence, colonisation or extinction per clearcut. Trees retained alive improved habitat quality of clearcuts, since both species were more frequent in dead wood of such trees, in comparison to logging residues. We suggest that retention can be improved by protecting and creating dead wood as intact trees during harvesting. Rare specialist species require habitat of high quality, and consequently it is impossible to meet the requirements of these species on every clearcut. To preserve all early-successional species at a regional scale, we recommend focusing retention of green trees and dead wood to one or a few trees species on each clearcut and in each landscape.     

Effects of forest fragmentation on small mammals in an Atlantic Forest landscape

Recent studies on the effects of tropical forest fragmentation indicate that fragmented landscapes are complex and heterogeneous systems influenced by factors other than the size or degree of isolation of forest remnants: of particular importance are the quality of the matrix and the edge-induced habitat changes. In order to investigate the influence of these factors, small mammals were surveyed in 36 sites in the landscape of Una, a region that encompasses some of the last and largest Atlantic Forest remnants in northeastern Brazil. Six sites were distributed on each of six landscape components – the interiors and edges of small remnants, the interiors and edges of large remnants, and the most common forested habitats found in the matrix. The survey comprised 46,656 trap-nights and yielded 1725 individuals of 20 species of rodents and marsupials. Results revealed: an increase in beta-diversity caused by fragmentation; the contrasting effects of the altered forested habitats of the matrix, which harbor both forest and disturbance-adapted species; a greater importance of edge effect than of patch size to the observed changes in small mammal community in remnants; an association among terrestrial forest species and among arboreal forest species in terms of the distribution and abundance in the Una mosaic; and a distinctive vulnerability of these two groups of species to fragmentation. Results emphasize the biological importance and conservation value of both fragmented landscapes and small remnants in the Atlantic Forest, as well as the importance of management techniques to control and attenuate edge effects.     

Dealing with vagueness in complex forest landscapes: A soft classification approach through a niche-based distribution model

The increasing interest in biodiversity conservation has led to the development of new approaches to facilitate ecologically based conservation policies and management plans. In this context, the development of effective methods for the classification of forest types constitutes a crucial issue as forests represent the most widespread vegetation structure and play a key role in ecosystem functioning. In this study a maximum entropy approach (Maxent) to forest type classification in a complex Mediterranean area, has been investigated. Maxent, a niche-based model of species/habitat distribution, allowed researchers to estimate the potential distribution of four forest types: Holm oak, Mixed oak, Mixed broadleaved and Riparian forests. The Maxent model's internal tests have proved a powerful tool for estimating the model's accuracy and analyzing the effects of the most important variables in the produced models. Moreover the comparison with a spectral response-based fuzzy classification, showed a higher accuracy in the Maxent outputs, demonstrating how the use of environmental variables, combined with spectral information in the classification of natural or semi-natural land cover classes, improves map accuracies. The modeling approach followed by this study, taking into account the uncertainty proper of the natural ecosystems and the use of environmental variables in land cover classification, can represent a useful approach to making more efficient and effective field inventories and to developing effective conservation policies.     

The line transect method for estimating densities of large mammals in a tropical deciduous forest: An evaluation of models and field experiments

We have evaluated techniques of estimating animal density through direct counts using line transects during 1988–92 in the tropical deciduous forests of Mudumalui Sanctuary in southern India for four species of large herbivorous mammals, namely, chital (Axis axis). sambar (Cervus unicolor). Asian elephant (Elephas maximus) and gaur (Bos gaurus) Density estimates derived from the Fourier Series and the Half-Normal models consistently had the lowest coefficient of variation. These two models also generated similar mean density estimates. For the Fourier Series estimator, appropriate cut-off widths for analyzing line transect data for the four species are suggested. Grouping data into various distance classes did not produce any appreciable differences in estimates of mean density or their variances, although model fit is generally better when data arc placed in fewer groups. The sampling effort needed to achieve a desired precision (coefficient of variation) in the density estimate is derived. A sampling effort of 800 km of transects returned a 10% coefficient of variation on estimate for ehital; for the other species a higher effort was needed to achieve this level of precision. There was no statistically significant relationship between detectability of a group and the size of the group for any species. Density estimates along roads were generally significantly different from those in the interior of the forest, indicating that road-side counts many not be appropriate for most species.     

Using species distribution modeling to set management priorities for mammals in northern Thailand

Rapid deforestation has occurred in northern Thailand and is expected to continue. Thus, identification and protection of sufficient amounts of the highest quality habitat is urgent. Wildlife occurrence data were gathered along wildlife trails and patrolling routes in protected areas and forest patches outside of protected areas. Geographic Information Systems, bio-physical and anthropogenic variables were used to generate suitable habitats for 17 mammal species using maximum entropy theory (MAXENT). Suitable habitats for all species were aggregated, and used to set priorities for wildlife conservation in northern Thailand. In addition, predicted deforestation was overlaid on moderate and high priority areas to determine future wildlife threats and aid decision-making concerning which areas to protect. The results revealed that the total extent of suitable habitats for the studied species covers approximately 37% of the region. Nearly 70% of the total habitat for endangered and vulnerable species is predicted in large and contiguous protected areas. Threatened areas with high biodiversity encompass approximately 1.9% of the region, and 66% of this figure is predicted to occur in existing protected areas. Based on the model outcomes, we recommend reducing human pressures, enhancing the density of prey species and conservation outside protected areas, as well as increasing connectivity of suitable habitats among protected areas that are too small to maintain viable populations in isolation.     

Rapid method for estimating local biodiversity of a community of small mammals

A new method is proposed for short-term capture and estimation of abundance of small mammals employing lines of modified traps. Test capture was undertaken on the shore of Teletskoe Lake in northwestern Altai. The proposed method allows rapid estimation of the biodiversity of small mammals community. The test has proved that rodents-to-insectivores ratio of caught animals is closer to the results yielded by lines of ditches than by break-back traps. The method is less labor-consuming than the ditch trapping. The new trap is shown schematically and recommendations on its practical use are given.     

A test of a competition model with reference to three species of small mammals in south-eastern Australia

This study tests the hypothesis that competition occurs in a community of three species of small mammals (Antechinus stuartii and A. swainsonii, Marsupialia; Rattus fuscipes, Rodentia) in south-eastern Australia. The hypothesis was tested by using a simple model of competition that is based on two premises: I. competition results in a negative numerical or a negative spatial association between species, and II. competition is more intense where the densities of the competing species are relatively high. The model combines both premises and predicts that measures of association between competing species will be more negative where the species exist at high population densities than derived from the model and applied to data gathered in two study areas with contrasting mean animal densities. There was no evidence of numerical association among the species (three tests), but evidence of negative spatial association (three tests our of four). These latter findings were consistent with the predictions of the model. All species preferred the same broad kinds of habitat (macrohabitat), but they segregated into smaller, finer grained patches (microhabitat) when their numbers were relatively high. Such segregation was more evident between the two species of marsupials than between either species of marsupial and the eutherian rat. These findings suggested that competition occurs by interference, and reinforce the idea that an understanding of the behaviour of individuals is important to understanding competition between species.     

Demography of palm species in Brazil’s Atlantic forest: a comparison of harvested and unharvested species using matrix models

Surprisingly little is known about the effect of alternative harvesting methods and different means of reproduction on the population dynamics of plant species. Here, we test the hypothesis that habitat fragmentation leads to negative population growth rates for three palm species in Brazil’s biodiversity-rich and highly fragmented Atlantic forest. We compared the demography (λ and elasticities) of Astrocaryum aculeatissimum, Euterpe edulis and Geonoma schottiana in five fragments ranging in size from 19 to 3500 ha. A total of 4.05 ha were censused throughout the landscape studied. All individuals of the three palms were tagged in 2005 and their survival was monitored in 2006 and 2007. All new plants were also recorded. Summary matrices were constructed for each transition years by pooling data from all plots of all fragments together for each species. Based on summary matrices, A. aculeatissimum and G. schottiana asymptotic population growth rates were not significantly different from 1, suggesting that populations of these palms were stable. The projection of E. edulis populations was to decrease in size, with 95% confidence intervals of λ for these estimates failing to exceed one in the second transition year. A. aculeatissimum, E. edulis and G. schottiana survivorship was high for all stage classes and exceeded 85% for postseedling stages. We found that the more important vital rates were the survival rates in larger stages for all three species. Our results show that the maintenance of high levels of reproductive survivorship should be a focus of conservation strategies for these species, especially in the case of large E. edulis individuals.     

Optimized Floating Refugia: a new strategy for species conservation in production forest landscapes

Timber production forests can support diverse ecological communities, but existing conservation strategies fail to maximize this potential. While methods for limiting logging damage and locating biological reserves have been developed, strategies focused on the sequence and arrangement of harvest units are lacking, particularly for situations in which species-specific knowledge is limited. We present a new landscape-level approach to forest conservation that anticipates local extinctions and focuses on facilitating re-colonization via strategic spatiotemporal harvest plans (which are informed by species occurrence data only). As a proof of concept, we applied our framework to data from four tropical forest sites and found clear benefits of optimized spatiotemporal harvest plans relative to non-optimized harvest plans (random and three pattern-based plans). Our proposed approach, termed the Optimized Floating Refugia strategy, requires minimal species-specific knowledge and can be used to enhance existing conservation efforts (e.g. biological reserve establishment, reduced-impact logging). The approach effectively prioritizes logging-sensitive habitat specialists with restricted ranges and thus provides the largest benefits to the most extinction-prone species. This simple but novel method shows promise as a general strategy to improve biodiversity conservation in species-rich production forest landscapes.     

Ice age distributions of European small mammals: insights from species distribution modelling

Aim In addition to the traditionally recognized Last Glacial Maximum (LGM, 21 ka) refuge areas in the Mediterranean region, more northerly LGM distributions for temperate and boreal taxa in central and eastern Europe are increasingly being discussed based on palaeoecological and phylogeographical evidence. Our aim was to investigate the potential refuge locations using species distribution modelling to estimate the geographical distribution of suitable climatic conditions for selected rodent species during the LGM. Location Eurasia. Methods Presence/absence data for seven rodent species with range limits corresponding to the limits of temperate or boreal forest or arctic tundra were used in the analysis. We developed predictive distribution models based on the species present‐day European distributions and validated these against their present‐day Siberian ranges. The models with the best predictors of the species distributions across Siberia were projected onto LGM climate simulations to assess the distribution of climatically suitable areas. Results The best distribution models provided good predictions of the present‐day Siberian ranges of the study species. Their LGM projections showed that areas with a suitable LGM climate for the three temperate species (Apodemus flavicollis, Apodemus sylvaticus and Microtus arvalis) were largely restricted to the traditionally recognized southern refuge areas, i.e. mainly in the Mediterranean region, but also southernmost France and southern parts of the Russian Plain. In contrast, suitable climatic conditions for the two boreal species (Clethrionomys glareous and Microtus agrestis) were predicted as far north as southern England and across southern parts of central and eastern Europe eastwards into the Russian Plain. For the two arctic species (Lemmus lemmus and Microtus oeconomus), suitable climate was predicted from the Atlantic coast eastward across central Europe and into Russia. Main conclusions Our results support the idea of more northerly refuge areas in Europe, indicating that boreal species would have found suitable living conditions over much of southern central and eastern Europe and the Russian Plain. Temperate species would have primarily found suitable conditions in the traditional southern refuge areas, but interestingly also in much of the southern Russian Plain.     

A small mammal community in a forest fragment, vegetation corridor and coffee matrix system in the Brazilian Atlantic forest

The objective of our work was to verify the value of the vegetation corridor in the conservation of small mammals in fragmented tropical landscapes, using a model system in the southeastern Minas Gerais. We evaluated and compared the composition and structure of small mammals in a vegetation corridor, forest fragments and a coffee matrix. A total of 15 species were recorded, and the highest species richness was observed in the vegetation corridor (13 species), followed by the forest fragments (10) and the coffee matrix (6). The absolute abundance was similar between the vegetation corridor and fragments (F = 22.94; p = 0.064), and the greatest differences occurred between the vegetation corridor and the matrix (F = 22.94; p = 0.001) and the forest fragments and the matrix (F = 22.94; p = 0.007). Six species showed significant habitat preference possibly related to the sensitivity of the species to the forest disturbance. Marmosops incanus was the species most sensitive to disturbance; Akodon montensis, Cerradomys subflavus, Gracilinanus microtarsus and Rhipidomys sp. displayed little sensitivity to disturbance, with a high relative abundance in the vegetation corridor. Calomys sp. was the species least affected by habitat disturbance, displaying a high relative abundance in the coffee matrix. Although the vegetation corridors are narrow (4 m width), our results support the hypothesis in which they work as a forest extension, share most species with the forest fragment and support species richness and abundance closer to forest fragments than to the coffee matrix. Our work highlights the importance and cost-effectiveness of these corridors to biodiversity management in the fragmented Atlantic Forest landscapes and at the regional level.     

The intestinal helminths of small mammals in the Malaysian tropical rain forest: Patterns of parasitism with respect to host ecology

Helminths of the intestine, liver and bile-duct of 8 species of small mammal from 3 localities in Peninsular Malaysia are reported. The most abundant hosts, Rattus surifer, R. sabanus and Tupaia glis harbour 13, 12 and 10 species of helminth respectively. There is no marked depletion in the number of helminth species per host species in the island locality. Infections with spiruroids, Digenea and cestodes reflect the insectivorous habits of the hosts. Characteristic parasite faunas can be defined. Patterns of parasitism are discussed with respect to the possible nature of the host-parasite relationships.     

Gene flow in complex landscapes: testing multiple hypotheses with causal modeling

Predicting population-level effects of landscape change depends on identifying factors that influence population connectivity in complex landscapes. However, most putative movement corridors and barriers have not been based on empirical data. In this study, we identify factors that influence connectivity by comparing patterns of genetic similarity among 146 black bears (Ursus americanus), sampled across a 3,000-km(2) study area in northern Idaho, with 110 landscape-resistance hypotheses. Genetic similarities were based on the pairwise percentage dissimilarity among all individuals based on nine microsatellite loci (average expected heterozygosity=0.79). Landscape-resistance hypotheses describe a range of potential relationships between movement cost and land cover, slope, elevation, roads, Euclidean distance, and a putative movement barrier. These hypotheses were divided into seven organizational models in which the influences of barriers, distance, and landscape features were statistically separated using partial Mantel tests. Only one of the competing organizational models was fully supported: patterns of genetic structure are primarily related to landscape gradients of land cover and elevation. The alternative landscape models, isolation by barriers and isolation by distance, are not supported. In this black bear population, gene flow is facilitated by contiguous forest cover at middle elevations.     

Patterns of sandfly distribution in tropical forest: a causal hypothesis

1. In tropical rain forest, phlebotomine sandflies (Diptera: Psychodidae), such as Lutzomyia vespertilionis and L.ylephiletor, have an aggregated distribution on their tree buttress diurnal resting sites, as studied during 1987-88 at Finca la Selva in the Caribbean lowlands of Costa Rica. 2. Experimental transfer of flies to trees not used as resting sites indicated that many apparently suitable sites remain unoccupied. 3. Observations of sandflies on the buttresses revealed that males and females are juxtaposed more frequently than expected by chance alone. Courtship behaviour by three of the four species of sandfly studied was observed on the buttresses. 4. It is suggested that the use of buttresses as swarming sites for mating behaviour is more likely to account for the observed distribution patterns of sandflies than their use of buttresses simply as diurnal resting sites.     

吊罗山热带天然林物种多样性的海拔分布格局

海拔梯度是影响物种多样性格局的关键因素。为探究吊罗山热带天然林物种多样性的海拔分布格局,该研究对吊罗山245～1 130 m海拔内的6个热带天然林样地进行植被调查,从群落物种组成、物种多样性、区系组成和叶性质等方面分析沿海拔梯度吊罗山热带天然林物种多样性与群落特征变化规律。结果表明：(1)随海拔升高、温度降低、湿度升高、人为干扰减少,吊罗山热带天然林物种组成以及Margalef、Shannon-Wiener、Simpson、Pielou多样性指数均呈现先升高后降低的格局;中海拔群落水热条件最为适宜、人为干扰适中、α物种多样性最高。(2)随海拔升高,优势种重要值占比呈现先降低后升高的格局,且优势种具有明显的更替现象,中海拔群落呈现低地雨林与山地雨林的过渡性质。(3)群落间S?rensen群落相似度和海拔高度差呈显著负相关(P<0.05)。(4)区系组成以热带区分布为绝对优势,并以热带亚洲(印度-马来西亚)分布为主;热带区分布比例和海拔呈极显著负相关(P<0.01),温带区分布比例和海拔呈极显著正相关(P<0.01)。(5)叶性质呈现出以中型叶、单叶、革质叶、全缘叶为主的...     

Bilateral distribution of implantation sites in small mammals of 22 North American species

The distribution of activity between the left and right sides of the reproductive tract, as measured by numbers of CL, embryos and placental scars, was studied in small mammals of 22 species. Shrews ovulate from the two ovaries in a distribution that does not differ from the binomial. Implantation of blastocysts in the two uterine horns is more nearly even ('balanced') than would be predicted from the binomial distribution. Balance in this group apparently is achieved by transuterine migration of blastocysts, perhaps in conjunction with some spacing mechanism within the uterus. Some cricetid rodents show little or no balance, but in others the distribution of activity sites (embryos, CL and placental scars) departs significantly from the binomial distribution. Reproductive activity sites of heteromyid and geomyid rodents (Geomyoidea) are highly balanced; uterine balance apparently is achieved by means of ovarian rather than uterine control. We know of no previous reports of ovarian balance and suggest that physiological mechanisms controlling numbers of ovulations in the species exhibiting this characteristic may differ from those in species exhibiting a random distribution of ovulation sites. Hypotheses regarding evolutionary aspects of balance are considered in phylogenetic and ecological terms, generating several testable research questions for physiologists, anatomists, and evolutionary ecologists.     

Validating distribution models for twelve endemic bird species of tropical dry forest in western Mexico

Considering the high biodiversity and conservation concerns of the tropical dry forest, this study aim is to predict and evaluate the potential and current distributions of twelve species of endemic birds which distribute along the western slope of Mexico. The main goal is to evaluate altogether different methods for predicting actual species distribution models (ADMs) of the twelve species including the identification of key environmental potential limiting factors. ADMs for twelve endemic Mexican birds were generated and validated by means of applying: (1) three widely used species niche modeling approaches (ENFA, Garp, and Maxent); (2) two thresholding methods, based on ROC curves and Kappa Index, for transforming continuous models to presence/absence (binary) models; (3) documented habitat–species associations for reducing species potential distribution models (PDMs); and (4) field occurrence data for validating final ADMs. Binary PDMs' predicted areas seemed overestimated, while ADMs looked drastically reduced and fragmented because of the approach taken for eliminating those predicted areas which were documented as unsuitable habitat types for individual species. Results indicated that both thresholding methods generated similar threshold values for species modeled by each of the three species distribution modeling algorithms (SDMAs). A Wilcoxon signed‐rank test, however, showed that Kappa values were generally higher than ROC curve for species modeled by ENFA and Maxent, while for Garp models there were no significant differences. Prediction success (e.g., true presences percentage) obtained from field occurrence data revealed a range of 50%–82% among the 12 species. The three modeling approaches applied enabled to test the application of two thresholding methods for transforming continuous to binary (presence/absence) models. The use of documented habitat preferences resulted in drastic reductions and fragmentation of PDMs. However, ADMs predictive success rate, tested using field species occurrence data, varied between 50 and 82%.     

Importance of intraspecifically gregarious species in a tropical bird community

In both single- and mixed-species social groups, certain participants are known to play important roles in providing benefits. Identifying these participants is critical for understanding group dynamics, but is often difficult with large roving social groups in the wild. Here, we develop a new approach to characterize roles in social groups and apply it to mixed-species bird flocks (flocks hereafter) in an Indian tropical evergreen forest. Two types of species, namely intraspecifically gregarious and sallying species, are thought to play important roles in flocks because studies have shown they attract other flock participants. However, it is unclear why these types are attractive and whether they are essential for flock formation. We address these questions by focusing on the composition of the subset of flocks containing only two species each. In two-species flocks, it is reasonable to assume that at least one species obtains some kind of benefit. Therefore, only those species combinations that result in benefit to at least one species should occur as two-species flocks. Using data from 540 flocks overall, of which 158 were two-species flocks, we find that intraspecifically gregarious species are disproportionately represented in two-species flocks and always lead flocks when present, and that flocks containing them are joined significantly more by other species. Our results suggest that intraspecifically gregarious species are likely to be the primary benefit providers in flocks and are important for tropical flock formation. Our study also provides a new approach to understanding importance in other mixed-species and single-species social groups.