Nitrogen cycling in desert biological soil crusts across biogeographic regions in the Southwestern United States

Biological soil crusts (BSCs) are thought to be important in the fertility of arid lands as gateways for carbon (C) and nitrogen (N). Studies on the Colorado Plateau have shown that an incomplete internal N cycle operates in BSCs that results in significant exports of dissolved organic N, ammonia and nitrate into the bulk soil through percolating water, thus mechanistically explaining their role as a N gateway. It is not known if this pattern is found in other arid regions. To examine this, we measured rates of major biogeochemical N-transformations in a variety of BSCs collected from the Colorado Plateau and the Mojave, Sonoran and Chihuahuan Deserts. Dinitrogen fixation and aerobic ammonia oxidation were prominent transformations at all sites. We found anaerobic ammonia oxidation (anammox) rates to be below the detection limit in all cases, and at least 50-fold smaller than rates of N₂-fixation, making it an irrelevant process for these BSCs. Heterotrophic denitrification was also of little consequence for the flow of N, with rates at least an order of magnitude smaller than those of N₂-fixation. Thus we could confirm that despite the demonstrable differences in microbial community composition and soil material, BSCs from major biogeographic regions in arid North America displayed a remarkably consistent pattern of internal N cycling. The implications for arid land fertility drawn from previous studies in the Colorado Plateau appear applicable to BSCs across other arid regions of the Southwestern United States.     

铜陵铜尾矿废弃地生物土壤结皮中的蓝藻多样性

生物土壤结皮是生态系统原生演替过程中的一个早期阶段,在铜陵铜尾矿废弃地自然生态恢复过程中生物土壤结皮在尾矿废弃地表面广泛分布.以生长在铜陵杨山冲和铜官山2处铜尾矿废弃地的生物土壤结皮为研究对象,运用常规培养方法和变性梯度凝胶电泳技术(PCR-DGGE)对不同群落生物土壤结皮中的蓝藻多样性及优势类群进行研究.结果表明2种研究方法所获得的蓝藻种类组成具有明显差异.显微观察结果表明常规培养试验中主要蓝藻类群为微囊藻属(Microcystis)、色球藻属(Chroococcus)、颤藻属(Oscillatoria)、念珠藻属(Nostoc)和浮鞘丝藻属(Planktolyngbya),其中优势种类主要为铜绿微囊藻(Microcystis aeruginosa)、断裂颤藻(Oscillatoria fracta)和细浮鞘丝藻(Planktolyngbya subtilis);提取样品中微生物总DNA,对蓝藻16SrRNA进行PCR-DGGE分析,回收DGGE图谱中24个条带进行测序分析,结果显示,所有序列与GenBank数据库中的近缘蓝藻的相似性系数均在93％以上,其中优势蓝藻类群主要隶属于微鞘藻属(Microcoleus)和细鞘丝藻属(Leptolyngbya),裸地(YL)处和木贼群落下尾矿表面(YM)的生物土壤结皮中优势蓝藻类群主要为微鞘藻属,而黄色真藓-藻类混合结皮(YT)和白茅群落( YB,TG)下的生物土壤结皮中的优势类群主要隶属于细鞘丝藻属.     

Nitrogen loss from deserts in the southwestern United States

A lower limit for nitrogen loss from desert ecosystems in the southwestern United States was estimated by comparing nitrogen inputs to the amount of nitrogen stored in desert soils and vegetation. Atmospheric input of nitrogen for the last 10 000 years was conservatively estimated to be 2.99 kg N/m². The amount of nitrogen stored in desert soils was calculated to be 0.604 kg N/m³ using extant data from 212 profiles located in Arizona, California, Nevada, and Utah. The average amount of nitrogen stored in desert vegetation is approximately 0.036 kg N/m².Desert conditions have existed in the southwestern United States throughout the last 10 000 years. Under such conditions, vertical leaching of nitrogen below a depth of 1 m is small (ca. 0.028 kg N/m² over 10 000 years) and streamflow losses of nitrogen from the desert landscape are negligible. Thus, the discrepancy found between nitrogen input and storage represents the amount of nitrogen lost to the atmosphere during the last 10 000 years. Loss of nitrogen to the atmosphere was calculated to be 2.32 kg N/m², which is 77% of the atmospheric inputs.Processes resulting in nitrogen loss to the atmosphere from desert ecosystems include wind erosion, ammonia volatilization, nitrification, and denitrification. Our analysis cannot assess the relative importance of these processes, but each is worthy of future research efforts.     

一种从土壤生物结皮中有效提取DNA的方法

在干旱、半干旱地区稀疏的高等植被间, 常有一层生物土壤结皮。       

黄土高原不同侵蚀类型区生物结皮中蓝藻的多样性

蓝藻是生物土壤结皮的重要组成部分,具有许多重要的生态功能.迄今为止,黄土高原地区生物结皮中藻类的种类组成及分布鲜有报道.通过野外调查、采样和室内观察、培养、鉴定,对黄土高原水蚀区、水蚀风蚀交错区、风蚀区的生物结皮中蓝藻的多样性及优势种进行了研究.结果表明,黄土高原3个侵蚀类型区生物结皮中蓝藻门植物共发现4科10属54种,其中丝状种类约占87％,占绝对优势;Shannon-Weiner多样性指数水蚀风蚀交错区最高,水蚀区次之,风蚀区最低,依次为2.22,2.20和2.14.水蚀风蚀交错区和水蚀区蓝藻多样性指数差异不显著,但均与风蚀区差异显著.3个侵蚀类型区的生物结皮中蓝藻的种类组成及优势种均有所差异,但均以颤藻科(Oscillatoriaceae)为优势科.水蚀风蚀交错区蓝藻种类最多(39种),以阿氏鞘丝藻(Lyngbya allorgei)为第一优势种;水蚀区次之(26种),以含钙席藻(Phormidum calciola)为第一优势种;风蚀区最少(20种),以颗粒颤藻(Oscillatoria granulata)为第一优势种.黄土高原不同侵蚀类型区生物结皮中蓝藻的多样性差异可能与土壤质地、土壤pH值、气候环境等有关.     

Non-native fishes and native species diversity in freshwater fish assemblages across the United States

The proliferation of non-native species in North American freshwater ecosystems is considered a primary threat to the integrity of native community structure. However, a general understanding of consistent and predictable impacts of non-native species on native freshwater diversity is limited, in part, because of a lack of broad-scale studies including data from numerous localities across multiple drainages. This study uses data from 751 localities collected during the United States Geological Survey (USGS) National Water Quality Assessment (NAWQA) program to examine the influence of non-native fish species on native freshwater fish assemblages across the United States. In general, no significant differences in native fish richness and diversity measures were detected between sites with only native species and sites containing non-native species. However, at sites with non-native species, the number of non-native species present was negatively correlated with native species richness and Shannon diversity and positively correlated with native evenness. Non-native piscivores were negatively correlated with native species richness and Shannon diversity and positively correlated with native evenness. Native piscivores were positively correlated with native richness and diversity and negatively correlated with native evenness at sites with only native species. Our results suggest that from a superficial perspective, native species richness and diversity are not different among sites with and without non-native species. However, when patterns of native species richness and diversity are examined at sites containing non-native species, correlations between non-native and native species richness and diversity imply the expected negative effect of invasive taxa. Additionally, non-native piscivores appear to have a significant negative effect on native taxa and possibly represent a novel selective force on naive native prey.     

Patterns of Early Cretaceous molluscan diversity gradients in south-central United States

During the maximum trangression of the Early Cretaceous sea into the Western Interior of the central United States, species diversity decreased from south to north. Maximum bivalve, gastropod. and cephalopod diversities occurred where lagoonal. basinal, and near-shore deposits intertongue. Mollusk diversities are low in the southern reefal deposits. Infaunal suspension-feeding and detritus-feeding gastropods and bivalves are most diverse in the northern nearshore areas, while epifaunal bivalves and carnivorous gastropods characterize the southern reefal areas. Noded-ribbed ammonoids are most diverse in the transitional area between the reefs, while nearshore substrates and smooth-flanked forms characterize the nearshore area. In the reefal area. the variety of ammonoid types is much reduced. This Early Cretaceous (Washitian Stage, mainly upper Albian) gradient is the result of a northward reduction in both habitat variability and predictability of limiting factors such as salinity and resources. This diversity gradient indicates that marine benthic communities in the Gulf Coast were structurally complex, whcreas those of the Western Interior were relatively simple.     

浑善达克沙地生物土壤结皮及其下层土壤中固氮细菌群落结构和多样性

【背景】荒漠化是一个重大环境问题,生物土壤结皮(Biological soil crusts,BSCs)可遏制荒漠化,其中的固氮微生物对BSCs的形成和发育有重要作用,但目前BSCs中固氮细菌群落结构和多样性尚不十分清楚。【目的】阐明浑善达克沙地中不同类型生物土壤结皮及其下层土壤固氮细菌的群落结构、多样性及其影响因素。【方法】利用稀释热法和碱解扩散法检测土壤的有机质(Organic matter,OM)和速效氮(Available nitrogen,AN)含量;利用高通量测序对nifH基因进行测序,基于nifH序列比较分析固氮细菌群落结构和多样性;利用典范对应分析(Canonical correlation analysis,CCA)分析群落、样品和土壤理化参数的相关性。【结果】固氮细菌优势菌门除在苔藓结皮(HSM)中为Cyanobacteria和Proteobacteria外,在其他类型BSCs中均只为Cyanobacteria;苔藓结皮下层土壤(HSMs)(下层土壤中只有HSMs检测到了nifH)优势菌门为Proteobacteria,优势菌纲为Alphaproteobacteria和Betaproteobacteria;优势菌属差异较大,藻结皮(HSA)中Unclassified_f_Nostocaceae占90.99%;地衣结皮(HSL)中Scytonema和Unclassified_f_Nostocaceae分别占45.85%和44.14%;HSM中Unclassified_f_Nostocaceae、Scytonema、Nostoc、Skermanella、Unclassified_o_Nostocales分别占29.21%、22.57%、15.34%、14.74%和10.60%;HSMs中Skermanella、Azohydromonas、Unclassified_p_Proteobacteria、Unclassified_c_Alphaproteobacteria分别占33.80%、25.66%、18.20%和10.62%;固氮细菌多样性随结皮的发育逐渐提高;OM和AN对结皮的发育起促进作用。【结论】藻结皮、地衣结皮和苔藓结皮及其紧邻下层土壤中的固氮细菌群落结构和多样性差异明显,且固氮细菌类群和多样性指数随BSCs发育阶段的提高而增加。本研究为认识和利用生物土壤结皮相关固氮细菌提供了基础依据。     

Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia

While microbial communities of aerosols have been examined, little is known about their sources. Nutrient composition and microbial communities of potential dust sources, saline lake sediments (SLS) and adjacent biological soil crusts (BSC), from Southern Australia were determined and compared with a previously analyzed dust sample. Multivariate analyses of fingerprinting profiles indicated that the bacterial communities of SLS and BSC were different, and these differences were mainly explained by salinity. Nutrient concentrations varied among the sites but could not explain the differences in microbial diversity patterns. Comparison of microbial communities with dust samples showed that deflation selects against filamentous cyanobacteria, such as the Nostocales group. This could be attributed to the firm attachment of cyanobacterial filaments to soil particles and/or because deflation occurs mainly in disturbed BSC, where cyanobacterial diversity is often low. Other bacterial groups, such as Actinobacteria and the spore-forming Firmicutes, were found in both dust and its sources. While Firmicutes-related sequences were mostly detected in the SLS bacterial communities (10% of total sequences), the actinobacterial sequences were retrieved from both (11-13%). In conclusion, the potential dust sources examined here show highly diverse bacterial communities and contain nutrients that can be transported with aerosols. The obtained fingerprinting and sequencing data may enable back tracking of dust plumes and their microorganisms.     

Frequent fire promotes diversity and cover of biological soil crusts in a derived temperate grassland

The intermediate disturbance hypothesis (IDH) predicts that species diversity is maximized at moderate disturbance levels. This model is often applied to grassy ecosystems, where disturbance can be important for maintaining vascular plant composition and diversity. However, effects of disturbance type and frequency on cover and diversity of non-vascular plants comprising biological soil crusts are poorly known, despite their potentially important role in ecosystem function. We established replicated disturbance regimes of different type (fire vs. mowing) and frequency (2, 4, 8 yearly and unburnt) in a high-quality, representative Themeda australis–Poa sieberiana derived grassland in south-eastern Australia. Effects on soil crust bryophytes and lichens (hereafter cryptogams) were measured after 12 years. Consistent with expectations under IDH, cryptogam richness and abundance declined under no disturbance, likely due to competitive exclusion by vascular plants as well as high soil turnover by soil invertebrates beneath thick grass. Disturbance type was also significant, with burning enhancing richness and abundance more than mowing. Contrary to expectations, however, cryptogam richness increased most dramatically under our most frequent and recent (2 year) burning regime, even when changes in abundance were accounted for by rarefaction analysis. Thus, from the perspective of cryptogams, 2-year burning was not an adequately severe disturbance regime to reduce diversity, highlighting the difficulty associated with expression of disturbance gradients in the application of IDH. Indeed, significant correlations with grassland structure suggest that cryptogam abundance and diversity in this relatively mesic (600 mm annual rainfall) grassland is maximised by frequent fires that reduce vegetation and litter cover, providing light, open areas and stable soil surfaces for colonisation. This contrasts with detrimental effects of 2-year burning on native perennial grasses, indicating that this proliferation of cryptogams has potentially high functional significance for situations where vegetation cover is depleted, particularly for reducing soil erosion.     

生物土壤结皮对荒漠土壤线虫群落的影响

在干旱的沙漠生态系统中,生物土壤结皮对于沙丘的固定和土壤生物的维持起着相当重要的作用.土壤线虫能敏感的指示土壤的恢复程度,是衡量沙区生态恢复与健康的重要生物学属性,而目前关于生物土壤结皮与土壤线虫的关系研究很少.为探明生物土壤结皮对土壤线虫的影响,以腾格里沙漠东南缘的人工植被固沙区藻结皮和藓类结皮覆盖的沙丘土壤为研究对象,根据固沙年限的不同将样地分为4个不同的区进行采样(1956、1964、1981和1991年固沙区),以流沙区作为对照;同时,在不同季度(4、7、9和12月)分别采集腾格里沙漠东南缘的人工植被固沙区藻结皮和藓类结皮覆盖下不同土层(0-10、10-20和20-30 cm)的沙丘土壤,以沙坡头地区的红卫天然植被区为对照,分析生物土壤结皮下土壤线虫的时空变化.采用改良的Baermann漏斗法进行分离线虫,用光学显微镜鉴定并统计.研究表明:1956、1964、1981和1991年人工植被固沙区的藻结皮和藓类结皮均可显著提高其下土壤线虫多度、属的丰富度、Shannon-Weaver多样性指数、富集指数和结构指数(P＜0.05),这可能是因为生物土壤结皮的存在为土壤线虫提供了重要的食物来源和适宜的生存环境;固沙年限与结皮下土壤线虫多度、属的丰富度、Shannon-Weaver多样性指数、富集指数和结构指数存在显著的正相关关系(P＜0.05),这说明固沙年限越久,越有利于土壤线虫的生存和繁衍;结皮类型显著影响土壤线虫群落,相对于藻结皮而言,藓类结皮下土壤线虫多度与属的丰富度更高(P＜0.05),这说明演替后期的藓类结皮比演替早期的藻结皮更有利于土壤线虫的生存和繁衍.此外,藻结皮和藓类结皮均可显著增加其下0-10、10-20和20-30 cm土层线虫多度和属的丰富度(P＜0.05),但随着土壤深度的增加,这种影响逐渐减弱,表明生物土壤结皮更有利于表层土壤线虫的生存;而且,随着季节的变化,藻结皮和藓类结皮下土壤线虫多度基本表现为秋季＞夏季＞春季＞冬季,这些反映了生物土壤结皮的生物量、盖度和种类组成随着季节变化而变化.因此,腾格里沙漠东南缘的人工植被固沙区生物土壤结皮的存在与演替有利于土壤线虫的生存和繁衍,增加了线虫数量、种类和多样性,这指示了生物土壤结皮有利于该区土壤及其相应生态系统的恢复.     

Climate and small scale factors determine functional diversity shifts of biological soil crusts in Iberian drylands

Understanding functional diversity is critical to manage and preserve biodiversity and ecosystem functioning in the face of global change. However, the efforts to characterize this functional component have been mostly directed to vascular vegetation. We sampled lichen-dominated biological soil crusts (BSCs) in semiarid grasslands along an environmental gradient in the Iberian Peninsula. We characterized five effect functional traits for 31 lichens species, and evaluated the influence of large scale (i.e. precipitation) and small scale factors (i.e. substrate type, shrub presence, Stipa tenacissima presence) on dominant trait values; i.e. community weighted means, and functional divergence; i.e. Rao quadratic entropy in 580 sampling quadrats. Across the gradient, we found multiple trait shifts and a general increase of functional divergence with increasing precipitation. We also observed that substrate type and small scale biotic factors determined shifts in all traits studied, while these factors affected less to functional divergence. Comparing functional diversity with taxonomic diversity, we found contrasting responses to both large and small scale factors. These findings suggest that BSC community trait composition is influenced by multi-scale abiotic and biotic factors with environmental filtering dominating at large spatial scales and limiting similarity at specific small scales. Also, our results emphasize the potential differences between taxonomic and functional diversity in response to environmental factors. We concluded that functional diversity of BSCs not only provides novel and critical knowledge of BSC community structure, but also it should be considered as a critical tool in biodiversity conservation strategies, ecosystem services assessment and ecological modelling.     

踩踏干扰对生物结皮土壤渗透性的影响

采用人工模拟降雨试验,研究了踩踏干扰对生物结皮土壤渗透性的影响.结果表明:踩踏干扰显著增加了土壤表面粗糙度,增加幅度与干扰强度有关,50%干扰度下表面粗糙度指数较不干扰增加91%.踩踏干扰延长了坡面产流时间,20%～50%干扰度范围内,随着干扰强度的增加,初始产流时间呈线性增加趋势,50%干扰度的初始产流时间较不干扰增加了169.7%.踩踏干扰增加了土壤渗透性,降低径流系数.50%干扰度的土壤累积入渗量较不干扰增加12.6%;去除生物结皮,土壤渗透性降低,累积入渗量较不干扰降低30.2%.50%以下的干扰度未显著增加土壤侵蚀模数.去除生物结皮,土壤侵蚀模数较不干扰增加10倍.生物结皮破碎度低于50%的干扰在不明显增加土壤流失量的前提下,可增加降水入渗,减小径流风险,改善土壤水分状况.     

不同植物群落下铜尾矿废弃地生物结皮中真菌群落结构的比较

分布于铜尾矿废弃地的裸地表面及维管植物群落中的生物土壤结皮在尾矿废弃地生态恢复过程中扮演重要角色。利用分子生物学技术探讨了不同维管植物下以及不同演替阶段的生物土壤结皮中真菌的多样性及其群落结构的变化。结果表明:生物土壤结皮中的真菌主要包括子囊菌门(Ascomycota)、担子菌门(Basidiomycota)和壶菌门(Chytridiomycota),其中子囊菌门占绝对优势,其相对丰度为55.12%—87.73%,其次为担子菌门相对丰度为12.27%—43.86%;不同样本真菌群落结构在门、纲、目以及属的水平存在显著差异;生物土壤结皮中真菌群落结构和多样性的差异与维管植物群落类型以及演替阶段不同的生物土壤结皮的类型有关,与基质化学性质之间无显著的相关性。     

Desert grassland responses to climate and soil moisture suggest divergent vulnerabilities across the southwestern United States

Climate change predictions include warming and drying trends, which are expected to be particularly pronounced in the southwestern United States. In this region, grassland dynamics are tightly linked to available moisture, yet it has proven difficult to resolve what aspects of climate drive vegetation change. In part, this is because it is unclear how heterogeneity in soils affects plant responses to climate. Here, we combine climate and soil properties with a mechanistic soil water model to explain temporal fluctuations in perennial grass cover, quantify where and the degree to which incorporating soil water dynamics enhances our ability to understand temporal patterns, and explore the potential consequences of climate change by assessing future trajectories of important climate and soil water variables. Our analyses focused on long‐term (20–56 years) perennial grass dynamics across the Colorado Plateau, Sonoran, and Chihuahuan Desert regions. Our results suggest that climate variability has negative effects on grass cover, and that precipitation subsidies that extend growing seasons are beneficial. Soil water metrics, including the number of dry days and availability of water from deeper (>30 cm) soil layers, explained additional grass cover variability. While individual climate variables were ranked as more important in explaining grass cover, collectively soil water accounted for 40–60% of the total explained variance. Soil water conditions were more useful for understanding the responses of C₃ than C₄ grass species. Projections of water balance variables under climate change indicate that conditions that currently support perennial grasses will be less common in the future, and these altered conditions will be more pronounced in the Chihuahuan Desert and Colorado Plateau. We conclude that incorporating multiple aspects of climate and accounting for soil variability can improve our ability to understand patterns, identify areas of vulnerability, and predict the future of desert grasslands.     

Emergence of hantaviral disease in the southwestern United States.

Hantaviruses are parasites of small mammals, predominantly peridomestic and commensal rodents. They have a worldwide distribution. Hantavirus-related illness occurs in rural areas where humans come into contact with rodents. In most cases human infection is manifested by one of a variety of acute illnesses involving hemorrhagic fever and renal disease. In May 1993, a cluster of patients with an acute pulmonary disease with high mortality was noted in the Four Corners region of the southwestern United States. Serologic and genetic studies indicated that the etiologic agent was a novel hantavirus. The uncertainty engendered by the emergence of a new disease with high mortality forced a rapid response by state and federal agencies and by the University of New Mexico Medical Center, Albuquerque, where most patients from this region were referred. Considerable progress has been made in identifying infected cases on clinical and laboratory grounds and in ensuring that appropriate supportive care is made available to patients as soon as they are suspected of having hantaviral infection. Cases of hantavirus pulmonary syndrome--both new and retrospectively diagnosed--are still being recognized throughout the western United States. Many important questions remain unanswered.