Specific features of the seismosensory system and their use in the systematics of five families of the order pleuronectiformes

The structure of the seismosensory system (SSS) was studied in 23 species of 13 genera from the families Rhombosoleidae, Poecilopsettidae, and Samaridae, and a comparison and generalization of the obtained data with those published previously for the families Psettodidae and Pleuronectidae was performed. It was shown that the individual variability of SSS does not concern topography of canals, being manifested in the variation of the number of pores in particular canals. Interspecific differences also concern mainly the number of pores, and revealing these differences requires, as a rule, statistic methods. Considerable differences were found between genera, so that each of the 40 studied genera can be characterized by a unique combination of SSS characters whose polarization was established on the basis of a reduction trend of SSS transformations common for bony fish. The maximum number of plesiomorphies of SSS was found in the genus Psettodes (Psettodidae). In the framework of the family Pleuronectidae, the most generalized structure of SSS was found in representatives of the subfamily Hippoglossinae, and the most advanced, in Pleuronectinae. In the family Rhombosoleidae, the most generalized structure of SSS is in the genus Oncopterus, the remaining representatives of the family Rhombosoleidae are characterized by a different degree of its reduction. In rather closely related families Poecilopsettidae and Samaridae, SSS is considerably reduced, which may be connected with the miniatuarization of their representatives. A small number of considered characters and a high level of homoplasia hinders their use in cladistic study; however, considerable differences between the studied genera and a low interspecific variation permits for the considering of specific features of SSS as valuable diagnostic characters of genera, and the degree of reduction of this system can indicate the relative degree of advancement of a specific taxon of Pleuronectiformes.     

Proposal of Monorhizochytrium globosum gen. nov., comb. nov. (Stramenopiles,Labyrinthulomycetes) for former Thraustochytrium globosum based on morphological features and phylogenetic relationships

Thraustochytrium is the type genus of the family Thraustochytriaceae in the class Labyrinthulomycetes. This genus is characterized by zoospore formation, namely, shape of the cell wall of sporangia and presence or absence of a proliferous body. However, there are several issues associated with the taxonomy of this genus, and these include polyphyletic taxa and overlapping of taxonomic features among species. In particular, the first and second species, T. proliferum and T. globosum, were described based on observations of the morphological features of natural samples in the absence of culture conditions. Before addressing the taxonomic issues associated with this genus, it is important to consider the taxonomic features of each species, i.e., the life history under culture conditions and the phylogenetic position. The objective of the present study was to isolate T. globosum, the second described species in the genus Thraustochytrium, from the type locality. We successfully isolated strain NBRC 112723, which exhibited characteristic features of T. globosum. Under culture conditions, strain NBRC 112723 exhibited taxonomic features observed in other thraustochytrid species. Our molecular phylogeny indicated that this strain isolated from the type locality was located in an unidentified thraustochytrid group; moreover, some strains located in this group exhibited characteristic features of strain NBRC 112723. We clearly distinguished T. globosum based on the taxonomic criteria used to classify the T. proliferum type species. Therefore, we propose the establishment of a new genus, Monorhizochytrium, for the species T. globosum in the family Thraustochytriaceae.     

Macrosiagon deuvei n. sp. (Coleoptera: Ripiphoridae) from the French Eocene amber

Macrosiagon deuvei n. sp., the second fossil representative of this extant genus of Ripiphoridae: Ripiphorinae: Macrosiagonini is described from the lowermost Eocene amber of Oise (France). The new species is compared with the extant species of the genus. Taxonomic position of other two fossil representatives of the family described from France by Perrichot et al. (2004) is discussed. The genus Paleoripiphorus Perrichot et al. 2004 is tentatively transferred from Ripiphorinae to Ripidiinae.     

Fruits of Heterocoma (Vernonieae‐Lychnophorinae): taxonomic significance and a new pattern of phytomelanin deposition in Asteraceae

Heterocoma is a Brazilian endemic genus resulting from the dismemberment of Sipolisiinae, in which only representatives with fruit containing phytomelanin were included in the genus. As the fruits of Asteraceae are known to be systematically important at various taxonomic levels and Heterocoma fruit has not been described previously, we studied the morphology and anatomy of the cypselas of all species of the genus, comparing them with other fruits in the family containing phytomelanin and evaluating the systematic potential at the specific and tribal levels. The fruits were analysed by scanning electron microscopy (SEM) and light microscopy. The morphological features of the fruit, including the carpopodium, ribs and pappi, varied in the genus and demonstrated potential for species discrimination. The anatomy showed a pattern for the genus with a uniseriate exocarp, the outer mesocarp composed of fibres arranged in several layers, the inner mesocarp composed of several layers of parenchyma, the endocarp, and phytomelanin deposited between the inner and outer mesocarp. This anatomical pattern of phytomelanin deposition differs from that of other Asteraceae with phytomelanin in their fruit. Heterocoma is also the only genus in Vernonieae that has phytomelanin deposition in the cypselas. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 179 , 255–265.     

External structure of postorbital organ of certain representatives of family astronesthidae (Stomiiformes)

The external structure of postorbital organ is described in detail in seven representatives of family Astronesthidae, i.e., Borostomias elucens, B. panamensis, B. mononema, B. antarcticus, Heterophorus ophistoma, Neonesthes microcephalus, and Rhadinesthes decimus. The shape, sizes, position with respect to eye, and some other features of the structure of the postorbital organ are characteristic of the species or close species. The comparison of the structure of this organ in the above-mentioned representatives of the family Astronesthidae and earlier studied species of genus Astronesthes is given.     

<Emphasis Type="Italic">Tubulideres seminoli</Emphasis> gen. et sp. nov. and <Emphasis Type="Italic">Zelinkaderes brightae</Emphasis> sp. nov. (Kinorhyncha,Cyclorhagida) from Florida

One new kinorhynch genus and species and one new species from the genus Zelinkaderes are described from sandy sediment off Fort Pierce, Florida. The new genus and species, Tubulideres seminoli gen. et sp. nov. is characterized by the presence of the first trunk segment consisting of a closed ring, the second segment of a bent tergal plate with a midventral articulation and the following nine segments consisting of a tergal and two sternal plates. Cuspidate spines are not present, but flexible tubules are located on several segments, and in particular concentrated on the ventral side of the second segment. Middorsal spines are present on all trunk segments and are alternatingly offset to a position slightly lateral to the middorsal line. Zelinkaderes brightae nov. sp. is characterized by its spine formula in having middorsal spines on trunk segments 4, 6 and 8–11, lateroventral acicular spines on segment 2, lateral accessory cuspidate spines on segments 2 and 8, ventrolateral cuspidate spines on segments 4–6 and 9, lateroventral acicular spines present on segments 8 and 9, and midterminal, lateral terminal and lateral terminal accessory spines on segment 11. The spine formula of Z. brightae nov. sp. places it in a position in between Z. submersus and a clade consisting of Z. klepali and Z. floridensis. The new findings on Z. brightae nov. sp. have led us to propose an emended diagnosis for the genus.     

St Lucia Whiptail Lizard Cnemidophorus vanzoi (Sauria: Teiidae) microsatellite primers

Eight polymorphic microsatellite loci have been characterized for the endangered St Lucia Whiptail Lizard Cnemidophorus vanzoi. Endemic to two small islets, Maria Major and Maria Minor, off the coast of St Lucia, Lesser Antilles, the world population is estimated at < 1000 individuals. However, representatives of the systematically complex genus Cnemidophorus, containing sexual species and parthenogenetic allopolyploids, are distributed widely in North, Central and South America, and on several islands in the Caribbean Sea. These microsatellite markers are being used to monitor the genetic structure of a population of St Lucia Whiptails, recently founded through translocation, on the nearby Praslin Island.     

New species of Allorhogas Gahan (Hymenoptera: Braconidae) reared from galls on Lycium cestroides Schltdl. (Solanaceae) in Argentina

Allorhogas cordobensis sp. nov. (Hymenoptera: Braconidae: Doryctinae) is described from the province of Córdoba, Argentina. Its representatives can be distinguished from all other known species of the genus by the unusual morphology of the ovipositor tip and the expanded clypeus apically. Remarkably, this species is also characterized by having a tridentate mandible, a feature known only in exodont braconids, mostly of the subfamily Alysiinae. The new species was reared from stem galls on Lycium cestroides, which constitutes the second record of an Allorhogas species associated with galls on representatives of the plant family Solanaceae.     

Four trematode cercariae from the New Zealand intertidal snail Zeacumantus subcarinatus (Batillariidae)

Abstract

The cercariae and sporocysts (or rediae) of four trematode species are described from the intertidal snail Zeacumantus subcarinatus: a distome xiphidiocercaria assigned to the genus Renicola (family Renicolidae); a monostome xiphidiocercaria belonging either to the genus Microphallus or Megalophallus (family Microphallidae); a magnacercous cercaria of the genus Galactosomum (family Hetero‐phyidae); and a cercaria of the genus Philophthalmus (family Philophthalmidae). The morphological features of these cercariae are compared to previously described cercariae of the same genera. In addition, since the philophthalmid cercaria encysts readily on artificial substrates in the laboratory, the metacercaria of this species is also described. These cercariae are part of a diverse community of at least six digenean species parasitising the snail Z. subcarinatus that, together, have a major impact on the ecology and evolution of this snail.     

Oligonucleotide Probes for the Detection of Representatives of the Genus Thermoanaerobacter

Based on the analysis of 16S rRNA nucleotide sequences, oligonucleotide probes were designed for the detection of representatives of the genus Thermoanaerobacter. To increase the specificity of detection, the genus Thermoanaerobacter was divided into three groups. The probe Tab 827 (5"-GCTTCCGCDYCCCACACCTA-3") detected all known representatives of the genus Thermoanaerobacter; the probe Tab_1 844 (5"-TTAACTACGGCACGRAATGCTTC-3") was specific for the first group of species of the genus (T. wiegelii, T. siderophilus, T. sulfurophilus, T. brockii, T. kivui, T. ethanolicus, T. acetoethylicus, and T. thermohydrosulfuricus); the probe Tab_2 424 (5"-CACTAMYGGGGTTTACAACC-3") targeted the second group (T. thermocopriae, T. mathranii, and T. italicus); and the probe Tab_3 184 (5"-TCCTCCATCAGGATGCCCTA-3") was specific for the third group (T. tengcongensis, T. yonseiensis, T. subterraneus, and Carboxydibrachium pacificum, an organism related to the genus Thermoanaerobacter according to its 16S rRNA sequence). The oligonucleotide probes were labeled with Dig-11-dUTP. Hybridization with the probes showed the affiliation with Thermoanaerobacter of several pure cultures that were morphologically similar to representatives of this genus but possessed metabolic features unusual for it (capacity for agarose hydrolysis, anaerobic oxidation of CO, growth at low pH values) or were isolated from habitats previously unknown for Thermoanaerobacter (deep-sea hydrothermal vents).     

Satellite DNA and chromosomes in Neotropical fishes: methods,applications and perspectives

Constitutive heterochromatin represents a substantial portion of the eukaryote genome, and it is mainly composed of tandemly repeated DNA sequences, such as satellite DNAs, which are also enriched by other dispersed repeated elements, including transposons. Studies on the organization, structure, composition and in situ localization of satellite DNAs have led to consistent advances in the understanding of the genome evolution of species, with a particular focus on heterochromatic domains, the diversification of heteromorphic sex chromosomes and the origin and maintenance of B chromosomes. Satellite DNAs can be chromosome specific or species specific, or they can characterize different species from a genus, family or even representatives of a given order. In some cases, the presence of these repeated elements in members of a single clade has enabled inferences of a phylogenetic nature. Genomic DNA restriction, using specific enzymes, is the most frequently used method for isolating satellite DNAs. Recent methods such as C₀t–1 DNA and chromosome microdissection, however, have proven to be efficient alternatives for the study of this class of DNA. Neotropical ichthyofauna is extremely rich and diverse enabling multiple approaches with regard to the differentiation and evolution of the genome. Genome components of some species and genera have been isolated, mapped and correlated with possible functions and structures of the chromosomes. The 5SHindIII‐DNA satellite DNA, which is specific to Hoplias malabaricus of the Erythrinidae family, has an exclusively centromeric location. The As51 satellite DNA, which is closely correlated with the genome diversification of some species from the genus Astyanax, has also been used to infer relationships between species. In the Prochilodontidae family, two repetitive DNA sequences were mapped on the chromosomes, and the SATH 1 satellite DNA is associated with the origin of heterochromatic B chromosomes in Prochilodus lineatus. Among species of the genus Characidium and the Parodontidae family, amplifications of satellite DNAs have demonstrated that these sequences are related to the differentiation of heteromorphic sex chromosomes. The possible elimination of satellite DNA units could explain the genome compaction that occurs among some species of Neotropical Tetraodontiformes. These topics are discussed in the present review, showing the importance of satellite DNA analysis in the differentiation and karyotype evolution of Actinopterygii.     

Comparative osteology,relationships, and systematics of fish of the genus <Emphasis Type="Italic">Zoarces</Emphasis> (Zoarcidae,Perciformes)

Comparative-osteological investigation of all species of the genus Zoarces is made: Z. fedorovi, Z. andriashevi, Z. elongatus, Z. viviparus, Z. americanus, and Z. gillii. In the skeleton of hyoid arch in species of Zoarces, Lycozoarces, and Lycodes, paired bony elements are found, not described previously, identified as parurohyalia which may be synapomorphy of Zoarcidae. Differences between the Zoarces species are revealed by 56 external morphological and osteological characters. Cladistic analysis yielded one tree 135, Ci 0.57, Ri 0.54 long. Cladistic analysis confirms validity of a recently described species Z. fedorovi, which turned out to be the most generalized in the genus Zoarces, as well as the validity of Z. elongatus. The species Z. americanus and Z. gillii occupy a terminal position preventing their isolation to independent genera as was previously supposed, as this would lead to paraphyly of the genus Zoarces.     

New species of parasitic copepods of the Genus Acusicola (Poecilostomatoida: Ergasilidae) from gill filaments of coastal and freshwater Brazilian fishes, and proposition of Acusicola rogeri n. sp. for A. tenax sensu Cressey & Collette (1970)

Four new species of Acusicola are described based on adult females found on gill filaments of several species of coastal and freshwater fishes caught in Brazilian basins. The distribution area of the genus in Brazil is significantly enlarged, since until now the previous Brazilian species had been known only from Amazonian fishes. The specimens identified as Acusicula tenax by Cressey and Collette (1970) are considered representatives of a new species, A. rogeri. A key for identification of the species of Acusicola is provided.     

<Emphasis Type="Italic">Elliptochloris bilobata</Emphasis> var. <Emphasis Type="Italic">corticola</Emphasis> var. nov. (Trebouxiophyceae,Chlorophyta), a novel subaerial coccal green alga

We investigated a previously unidentified subaerial corticolous strain of the genus Elliptochloris Tschermak-Woess. The alga shares the generic morphological characters with Elliptochloris bilobata, the type species of the genus, but it has a thicker cell wall of adult globular cells, different chloroplast structure and it also differs in shape of elliptical autospores. The differences of the autospore shape between both species were evaluated using landmark-based geometric morphometrics. The 18S rDNA gene sequence of the new alga forms a monophyletic clade with the authentic strain of E. bilobata within the green algal class Trebouxiophyceae close to representatives of the genus Coccomyxa. We describe the new alga as Elliptochloris bilobata var. corticola var. nov. Presented at the International Symposium Biology and Taxonomy of Green Algae V, Smolenice, June 26–29, 2007, Slovakia.     

Denitrification is a common feature among members of the genus Bacillus

Although several Gram-positive denitrifiers have been characterized in the past, there is still uncertainty about the occurrence of the denitrification trait among these bacteria. In an isolation campaign on luvisol soil, Bacillus spp. were among the most abundant retrieved cultured denitrifiers next to members of Rhizobiaceae family and genus Cupriavidus. Subsequent screening of 180 representatives of the genus Bacillus (encompassing more than half of the current validly described species diversity in Bacillus) was performed and demonstrated the potential for dissimilatory reduction of nitrogen compounds in 45 of the 87 investigated species, with 19 species containing denitrifying members. The influence of several electron donors and acceptors was tested. The use of more than one electron acceptor, e.g. both nitrate and nitrite, was crucial to detect the denitrification potential of reference strains. Complex electron donors, most suitable for aerobic growth, were ideal for denitrification testing, while retrieval of denitrifiers from the environment was facilitated by the use of defined electron donors, due to less interference of other anaerobic growers. The outcome of the isolation campaign and screening of reference strain set suggest that bacilli may be potential contributors to denitrification in terrestrial and possibly other ecosystems.     

Taxonomic and phylogenetic analysis of Saprolegniaceae (Oomycetes) inferred from LSU rDNA and ITS sequence comparisons

The aim of this study was to improve our knowledge about the taxonomy and phylogeny of the family Saprolegniaceae, a group of water molds including several pathogens of plants, fish and crustacea. ITS and LSU rDNA were sequenced for representatives of forty species corresponding to ten genera (Achlya, Aphanomyces, Brevilegnia, Dictyuchus, Leptolegenia, Plectospira, Pythiopsis, Saprolegnia, Thraustotheca). Phenetic and cladistic analyses were then carried out. The species Brevilegnia bispora does not appear to belong to the family Saprolegniaceae. Plectospira myrianda clusters with Aphanomyces spp. and they constitute an ancestral group. (Thraustotheca clavata is closely related to the eccentric species of the genus Achlya. The genus Achlya appears polyphyletic, corroborating more or less the three known subgroups, defined by their sexual spore type (eccentric, centric and subcentric). The achlyoid type of spore dehiscence, shared by Aphanomyces and Achlya genera, is shown to be an ancestral character. The saprolegnioid, dictyoid and thraustothecoid types of spore dehiscence are derived characters but their relative evolutionary positions are not resolved.