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1.
Genetic linkage maps have been produced for a wide range of organisms during the last decade, thanks to the increasing availability of molecular markers. The use of microsatellites (or Simple Sequence Repeats, SSRs) as genetic markers has led to the construction of “second-generation” genetic maps for humans, mouse and other organisms of major importance. We constructed a second-generation single-tree genetic linkage map of Norway spruce (Picea abies K.) using a panel of 72 haploid megagametophytes with a total of 447 segregating bands [366 Amplified Fragment Length Polymorphisms (AFLPs), 20 Selective Amplification of Microsatellite Polymorphic Loci (SAMPLs) and 61 SSRs, each single band being treated initially as a dominant marker]. Four hundred and thirteen markers were mapped in 29 linkage groups (including triplets and doublets) covering a genetic length of 2198.3?cM, which represents 77.4% of the estimated genome length of Picea abies (approximately 2839?cM). The map is still far from coalescing into the expected 12 chromosomal linkage groups of Norway spruce (2n?=?2x?=?24). A?possible explanation for this comes from the observed non-random distribution of markers in the framework map. Thirty-eight SSR marker loci could be mapped onto 19 linkage groups. This set of highly informative Sequence Tagged Sites (STSs) can be used in many aspects of genetic analysis of forest trees, such as marker-assisted selection, QTL mapping, positional cloning, gene flow analysis, mating system analysis and genetic diversity studies. 相似文献
2.
A full saturated linkage map of<Emphasis Type="Italic"> Picea abies</Emphasis> including AFLP,SSR, ESTP, 5S rDNA and morphological markers 总被引:3,自引:0,他引:3
Acheré V Faivre-Rampant P Jeandroz S Besnard G Markussen T Aragones A Fladung M Ritter E Favre JM 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2004,108(8):1602-1613
Based on an F1 progeny of 73 individuals, two parental maps were constructed according to the double pseudo-test cross strategy. The paternal map contained 16 linkage groups for a total genetic length of 1,792 cM. The maternal map covered 1,920 cM, and consisted of 12 linkage groups. These parental maps were then integrated using 66 intercross markers. The resulting consensus map covered 2,035 cM and included 755 markers (661 AFLPs, 74 SSRs, 18 ESTPs, the 5S rDNA and the early cone formation trait) on 12 linkage groups, reflecting the haploid number of chromosomes of Picea abies. The average spacing between two adjacent markers was 2.6 cM. The presence of 39 of the SSR and/or ESTP markers from this consensus map on other published maps of different Picea and Pinus species allowed us to establish partial linkage group homologies across three P. abies maps (up to five common markers per linkage group). This first saturated linkage map of P. abies could be therefore used as a support for developing comparative genome mapping in conifers.Communicated by O. Savolainen 相似文献
3.
G. Binelli G. Bucci 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1994,88(3-4):283-288
Norway spruce (Picea abies Karst.) is a most important species among European forest trees for both economical and ecological reasons. However, this species has suffered from a lack of information on the genetic side due to the scarcity of linkage data. In this study we have used a population of 72 megagametophytes from a single tree in a natural Italian stand to produce a genetic linkage map by means of RAPD markers. Ninety-six random decamers used as primers yielded 185 polymorphic loci showing Mendelian inheritance. Analysis of the segregation by multipoint analysis allowed us to define 17 major linkage groups covering a total distance of 3584 cM, with an average spacing between markers of 22 cM. Possible uses of a genetic linkage map with respect to population ecology and genetics are discussed. 相似文献
4.
Genetic maps provide an important genomic resource of basic and applied significance. Spruce (Picea) has a very large genome size (between 0.85 × 1010 and 2.4 × 1010 bp; 8.5-24.0 pg/1C, a mean of 17.7 pg/1C ). We have constructed a near-saturated genetic linkage map for an interspecific backcross (BC1) hybrid of black spruce (BS; Picea mariana (Mill.) B.S.P.) and red spruce (RS; Picea rubens Sarg.), using selectively amplified microsatellite polymorphic loci (SAMPL) markers. A total of 2284 SAMPL markers were resolved using 31 SAMPL-MseI selective nucleotide primer combinations. Of these, 1216 SAMPL markers showing Mendelian segregation were mapped, whereas 1068 (46.8%) SAMPL fragments showed segregation distortion at α = 0.05. Maternal, paternal, and consensus maps consistently coalesced into 12 linkage groups, corresponding to the haploid chromosome number (1n = 1x = 12) of 12 in the genus Picea. The maternal BS map consisted of 814 markers distributed over 12 linkage groups, covering 1670 cM, with a mean map distance of 2.1 cM between adjacent markers. The paternal BS × RS map consisted of 773 markers distributed over 12 linkage groups, covering 1563 cM, with a mean map distance of 2.0 cM between adjacent markers. The consensus interspecific hybrid BC1 map consisted of 1216 markers distributed over 12 linkage groups, covering 1865 cM (98% genome coverage), with a mean map distance of 1.5 cM between adjacent markers. The genetic map reported here provides an important genomic resource in Picea, Pinaceae, and conifers. 相似文献
5.
Genetic linkage map in sour cherry using RFLP markers 总被引:6,自引:0,他引:6
D. Wang R. Karle T. S. Brettin A. F. Iezzoni 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1998,97(8):1217-1224
Restriction fragment length polymorphism (RFLP) linkage maps of two tetraploid sour cherry (Prunus cerasus L., 2n=4x=32) cultivars, Rheinische Schattenmorelle (RS) and Erdi Botermo (EB), were constructed from 86 progeny from the cross RS×EB.
The RS linkage map consists of 126 single-dose restriction fragment (SDRF, Wu et al. 1992) markers assigned to 19 linkage
groups covering 461.6 cM. The EB linkage map has 95 SDRF markers assigned to 16 linkage groups covering 279.2 cM. Fifty three
markers mapped in both parents were used as bridges between both maps and 13 sets of homologous linkage groups were identified.
Homoeologous relationships among the sour cherry linkage groups could not be determined because only 15 probes identified
duplicate loci. Fifty nine of the markers on the linkage maps were detected with probes used in other Prunus genetic linkage maps. Four of the sour cherry linkage groups may be homologous with four of the eight genetic linkage groups
identified in peach and almond. Twenty one fragments expected to segregate in a 1 : 1 ratio segregated in a 2 : 1 ratio. Three
of these fragments were used in the final map construction because they all mapped to the same linkage group. Six fragments
exhibited segregation consistent with the expectations of intergenomic pairing and/or recombination.
Received: 1 April 1998 / Accepted: 9 June 1998 相似文献
6.
Ivan Scotti Andrea Burelli Federica Cattonaro David Chagné John Fuller Peter E. Hedley Gunnar Jansson Celine Lalanne Delphine Madur David Neale Christophe Plomion Wayne Powell Michela Troggio Michele Morgante 《Tree Genetics & Genomes》2005,1(3):93-102
In order to analyze the large-scale structure of the genome of Norway spruce (Picea abies Karst.), a pseudo-testcross genetic linkage map was built using markers of six different types, belonging to the low (amplified
fragment length polymorphisms, simple sequence repeats) or high (sequence-specific amplified polymorphisms, inter-retrotransposon
amplified polymorphisms) copy-number fraction of the genome, and including expressed region-derived markers (expressed sequence
tag polymorphisms). Twenty seven and 23 linkage groups of at least four markers were obtained for the female and the male
parent maps, respectively. A subset of these linkage groups coalesced into 13 bi-parental linkage groups through markers shared
between the two maps. This map was used to investigate the frequency of each marker type over chromosomes and the distribution
of marker types relative to each other, using autocorrelation techniques. Our results show that, while the composition of
chromosomes is homogeneous, low- and high-copy-number markers tend to occupy separate regions of the linkage groups, and that
expressed sequences are preferentially associated with microsatellites and separated from retrotransposons. These results
indicate that the spatial structure of Norway spruce chromosomes is not homogeneous.
Electronic supplementary material Supplementary material is available for this article at and accessible for authorised users. 相似文献
7.
A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 5S rDNA markers 总被引:5,自引:0,他引:5
T. Barreneche C. Bodenes C. Lexer J.-F. Trontin S. Fluch R. Streiff C. Plomion G. Roussel H. Steinkellner K. Burg J.-M. Favre J. Glössl A. Kremer 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1998,97(7):1090-1103
A genetic map of Pedunculate oak (Quercus robur) was constructed based on one 5S rDNA, 271 RAPD, ten SCAR, 18 microsatellite, one minisatellite, and six isozyme markers.
A total of 94 individuals from a full-sib family was genotyped. Two maps, including 307 markers, were constructed according
to the “two-way pseudo-testcross” mapping strategy. Testcross markers segregating in the 1 : 1 ratio were first used to establish
separate maternal (893.2 cM, 12 linkage groups) and paternal (921.7 cM, 12 linkage groups) maps. Both maps provided 85–90%
genome coverage. Homologies between the male and female linkage groups were then identified based on 74 intercross markers
segregating in the 3 : 1, 1 : 2 : 1 and 1 : 1 : 1 : 1 ratios (RAPDs, SCARs, SSRs, 5S rDNA and isozymes) in the hybrid progeny.
In each map, approximately 18% of the studied markers showed segregation distortion. More than 60% of the skewed markers were
due to an excess of heterozygote genotypes. This map will be used for: (1) studying the molecular organisation of genomic
regions involved in inter- and intraspecific differentiation in oaks and (2) identification of QTLs for adaptive traits.
Received: 30 January 1998 / Accepted: 12 May 1998 相似文献
8.
Ulloa M Meredith WR Shappley ZW Kahler AL 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2002,104(2-3):200-208
An RFLP genetic linkage joinmap was constructed from four different mapping populations of cotton (Gossypium hirsutum L.). Genetic maps from two of the four populations have been previously reported. The third genetic map was constructed from
199 bulk-sampled plots of an F2.3 (HQ95–6×’MD51ne’) population. The map comprises 83 loci mapped to 24 linkage groups with an average distance between markers
of 10.0 centiMorgan (cM), covering 830.1 cM or approximately 18% of the genome. The fourth genetic map was developed from
155 bulk-sampled plots of an F2.3 (119– 5 sub-okra×’MD51ne’) population. This map comprises 56 loci mapped to 16 linkage groups with an average distance between
markers of 9.3 cM, covering 520.4 cM or approximately 11% of the cotton genome. A core of 104 cDNA probes was shared between
populations, yielding 111 RFLP loci. The constructed genetic linkage joinmap from the above four populations comprises 284
loci mapped to 47 linkage groups with the average distance between markers of 5.3 cM, covering 1,502.6 cM or approximately
31% of the total recombinational length of the cotton genome. The linkage groups contained from 2 to 54 loci each and ranged
in distance from 1.0 to 142.6 cM. The joinmap provided further knowledge of competitive chromosome arrangement, parental relationships,
gene order, and increased the potential to map genes for the improvement of the cotton crop. This is the first genetic linkage
joinmap assembled in G. hirsutum with a core of RFLP markers assayed on different genetic backgrounds of cotton populations (Acala, Delta, and Texas plain).
Research is ongoing for the identification of quantitative trait loci for agronomic, physiological and fiber quality traits
on these maps, and the identification of RFLP loci lineage for G. hirsutum from its diploid progenitors (the A and D genomes).
Received: 23 February 2001 / Accepted: 8 June 2001 相似文献
9.
Ana Delia Gisbert José Martínez-Calvo Gerardo Llácer María Luisa Badenes Carlos Romero 《Molecular breeding : new strategies in plant improvement》2009,23(3):523-538
Loquat [Eriobotrya japonica (Thunb.) Lindl.] is a Rosaceae fruit species of growing interest as an alternative to the main fruit crops. However, only
a few genetic studies have been carried out on this species. This paper reports the construction of the first genetic maps
of two loquat cultivars based on AFLP and microsatellite markers from Malus, Eriobotrya, Pyrus and Prunus genera. An F1 population consisting of 81 individuals, derived from the cross between ‘Algerie’ and ‘Zaozhong-6’ cultivars, was used to
construct both maps. A total of 111 scorable simple sequence repeat (SSR) loci resulted from the testing of 440 SSR primer
pairs in the analyzed progeny and the SSR transferability to Eriobotrya was found to be 74% from apple, 58% from pear and 49% from Prunus spp. In addition, 183 AFLP polymorphic bands were produced using 42 primer combinations. The ‘Algerie’ map was organized
in 17 linkage groups covering a distance of 900 cM and comprising 177 loci (83 SSRs and 94 AFLPs) with an average marker distance
of 5.1 cM. Self-incompatibility trait was mapped at the distal part of the LG17 linkage group, as previously reported in Malus and Pyrus. The ‘Zaozhong-6’ map covered 870 cM comprising 146 loci (64 SSRs and 82 AFLPs) with an average marker distance of 5.9 cM.
The 44 SSRs and the 48 AFLPs share in common by both maps were essentially collinear and, moreover, the order of the 75% of
apple and pear SSRs mapped in Eriobotrya was shown to be consistent across the Maloideae subfamily. As a whole, these maps represent a useful tool to facilitate loquat
breeding and an interesting framework for map comparison in the Rosaceae. 相似文献
10.
James W. Borrone J. Steven Brown Cecile L. Tondo Margarita Mauro-Herrera David N. Kuhn Helen A. Violi Robert T. Sautter Raymond J. Schnell 《Tree Genetics & Genomes》2009,5(4):553-560
Recent enhancement of the pool of known molecular markers for avocado has allowed the construction of the first moderately
dense genetic map for this species. Over 300 SSR markers have been characterized and 163 of these were used to construct a
map from the reciprocal cross of two Florida cultivars 'Simmonds' and 'Tonnage'. One hundred thirty-five primer pairs amplified
163 usable loci with 20 primer pairs amplifying more than one locus. 'Tonnage' was heterozygous for 152 (93%) loci, whereas
'Simmonds' was heterozygous for 64 (39%). Null alleles were identified at several loci. Linkage maps were produced for both
reciprocal crosses and combined to generate a composite linkage map for the F1 population of 715 individuals. The composite map contains 12 linkage groups. Linkage groups ranged in size from 157.3 cM
(LG2) to 2.4 cM (LG12) and the number of loci mapped per group ranged from 29 (LG1) to two (LG12). The total map length was
1,087.4 cM. Only seven markers were observed to have segregation distortion (α ≤ 0.05) across both sub-composite (reciprocal) maps. Phenotypic data from traits of horticultural interest are currently
being collected on this population with the ultimate goal of identifying useful quantitative trait loci and the development
of a marker-assisted selection program. 相似文献
11.
AFLP genetic maps of Eucalyptus globulus and E. tereticornis 总被引:8,自引:0,他引:8
C. M. Marques J. A. Araújo J. G. Ferreira R. Whetten D. M. O’Malley B.-H. Liu R. Sederoff 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1998,96(6-7):727-737
Amplified fragment length polymorphism (AFLP) analysis is a rapid and efficient technique for detecting large numbers of
DNA markers in eucalypts. We have used AFLP markers in a two-way pseudo-testcross strategy to generate genetic maps of two
clones of different Eucalyptus species (E. tereticornis and E. globulus). Of 606 polymorphic fragments scored, 487 segregated in a 1 : 1 ratio, corresponding to DNA polymorphisms heterozygous in
one parent and null in the other. In the maternal E. tereticornis map, 268 markers were ordered in 14 linkage groups (919 cM); the paternal E. globulus map had 200 markers in 16 linkage groups (967 cM). Results from PGRI software were compared with MAPMAKER. The average density
of markers was approximately 1 per 3.9 cM. Framework markers were ordered with an average confidence level of 90%, covering
80–100% of the estimated Eucalyptus genome size. In order to investigate the homologies between the E. tereticornis and the E. globulus genetic linkage maps, we included 19 markers segregating 3 : 1 in the analysis. Some homeologous linkage groups were recognized.
The linkage data developed in these maps will be used to detect loci controlling commercially important traits.
Received: 17 July 1997 / Accepted: 13 October 1997 相似文献
12.
Pelgas B Bousquet J Beauseigle S Isabel N 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2005,111(8):1466-1488
Four individual linkage maps were constructed from two crosses for the species complex Picea mariana (Mill.) B.S.P. × Picea rubens Sarg in order to integrate their information into a composite map and to compare with other Pinaceae. For all individual
linkage maps, 12 major linkage groups were recovered with 306 markers per map on average. Before building the composite linkage
map, the common male parent between the two crosses made it possible to construct a reference linkage map to validate the
relative position of homologous markers. The final composite map had a length of 2,319 cM (Haldane) and contained a total
of 1,124 positioned markers, including 1,014 AFLPs, 3 RAPDs, 53 SSRs, and 54 ESTPs, assembled into 12 major linkage groups.
Marker density of the composite map was statistically homogenous and was much higher (one marker every 2.1 cM) than that of
the individual linkage maps (one marker every 5.7 to 7.1 cM). Synteny was well conserved between individual, reference, and
composite linkage maps and 94% of homologous markers were colinear between the reference and composite maps. The combined
information from the two crosses increased by about 24% the number of anchor markers compared to the information from any
single cross. With a total number of 107 anchor markers (SSRs and ESTPs), the composite linkage map is a useful starting point
for large-scale genome comparisons at the intergeneric level in the Pinaceae. Comparisons of this map with those in Pinus and Pseudotsuga allowed the identification of one breakdown in synteny where one linkage group homoeologous to both Picea and Pinus corresponded to two linkage groups in Pseudotsuga. Implications for the evolution of the Pinaceae genome are discussed.
Electronic Supplementary Material Supplementary material is available for this article at 相似文献
13.
Anand Raj Kumar Kullan Maria M. van Dyk Nicoletta Jones Arnulf Kanzler Arlene Bayley Alexander A. Myburg 《Tree Genetics & Genomes》2012,8(1):163-175
Traits that differentiate cross-fertile plant species can be dissected by genetic linkage analysis in interspecific hybrids.
Such studies have been greatly facilitated in Eucalyptus tree species by the recent development of Diversity Arrays Technology (DArT) markers. DArT is an affordable, high-throughput
marker technology for the construction of high-density genetic linkage maps. Eucalyptus grandis and Eucalyptus urophylla are commonly used to produce fast-growing, disease tolerant hybrids for clonal eucalypt plantations in tropical and subtropical
regions. We analysed 7,680 DArT markers in an F2 pseudo-backcross mapping pedigree based on an F1 hybrid clone of E. grandis and E. urophylla. A total of 2,440 markers (31.7%) were polymorphic and could be placed in linkage maps of the F1 hybrid and two pure-species
backcross parents. An integrated genetic linkage map was constructed for the pedigree resulting in 11 linkage groups (n = 11) with 2,290 high-confidence (LOD ≥ 3.0) markers and a total map length of 1,107.6 cM. DNA sequence analysis of the mapped
DArT marker fragments revealed that 43% were located in protein coding regions and 90% could be placed in the recently completed
draft genome assembly of E. grandis. Together with the anchored genomic sequence information, this linkage map will allow detailed genetic dissection of quantitative
traits and hybrid fitness characters segregating in the F2 progeny and will facilitate the development of markers for molecular
breeding in Eucalyptus. 相似文献
14.
Stuart W. A’Hara Joan Elizabeth Cottrell 《Molecular breeding : new strategies in plant improvement》2009,23(2):349-355
Robust, polymorphic microsatellite DNA markers (simple sequence repeats—SSRs) are valuable tools for a range of tree conservation
and breeding applications. SSRs are routinely used in the study of population genetic structure and diversity, pedigree reconstruction
and genetic linkage mapping. Their abundance in the genome, co-dominant inheritance and potential for cross-species amplification
make microsatellites highly prized markers. This paper characterises 22 novel genomic polymorphic microsatellite loci for
Sitka spruce (Picea sitchensis (Bong.) Carr.). Amplification of DNA from Sitka spruce material was carried out both with a set of unrelated trees to obtain
diversity statistics for each locus, and with the progeny of a full-sib family to test simple Mendelian inheritance. Observed
heterozygosity ranged from 0.38 to 0.91 and allele number per locus ranged from 6 to 21, with a mean of 12.2. In addition,
the primer pairs were tested with DNA from Norway spruce (P. abies) and white spruce (P. glauca) to investigate their potential for cross-species amplification and ten loci amplified in all three species. The results
from these genomic microsatellites are compared to data generated from microsatellites derived from Picea EST libraries. In summary, this novel, highly polymorphic markers represent a significant addition to the rapidly expanding
Picea genomics tool-box.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
15.
Dan E. Wells Laura Gutierrez Zhenkang Xu Vladimir Krylov Jaroslav Macha Kerstin P. Blankenburg Matthew Hitchens Larry J. Bellot Mary Spivey Derek L. Stemple Andria Kowis Yuan Ye Shiran Pasternak Jenetta Owen Thu Tran Renata Slavikova Lucie Tumova Tereza Tlapakova Eva Seifertova Steven E. Scherer Amy K. Sater 《Developmental biology》2011,(1):507
We present a genetic map for Xenopus tropicalis, consisting of 2886 Simple Sequence Length Polymorphism (SSLP) markers. Using a bioinformatics-based strategy, we identified unique SSLPs within the X. tropicalis genome. Scaffolds from X. tropicalis genome assembly 2.0 (JGI) were scanned for Simple Sequence Repeats (SSRs); unique SSRs were then tested for amplification and polymorphisms using DNA from inbred Nigerian and Ivory Coast individuals. Thus identified, the SSLPs were genotyped against a mapping cross panel of DNA samples from 190 F2 individuals. Nearly 4000 SSLPs were genotyped, yielding a 2886-marker genetic map consisting of 10 major linkage groups between 73 and 132 cM in length, and 4 smaller linkage groups between 7 and 40 cM. The total effective size of the map is 1658 cM, and the average intermarker distance for each linkage group ranged from 0.27 to 0.75 cM. Fluorescence In Situ Hybridization (FISH) was carried out using probes for genes located on mapped scaffolds to assign linkage groups to chromosomes. Comparisons of this map with the X. tropicalis genome Assembly 4.1 (JGI) indicate that the map provides representation of a minimum of 66% of the X. tropicalis genome, incorporating 758 of the approximately 1300 scaffolds over 100,000 bp. The genetic map and SSLP marker database constitute an essential resource for genetic and genomic analyses in X. tropicalis. 相似文献
16.
The Pacific oyster (Crassostrea gigas) is one of the most important oysters cultured worldwide. To analyze the oyster genome and dissect growth-related traits,
we constructed a sex-averaged linkage map by combining 64 genomic simple sequence repeats, 42 expressed sequence tag-derived
SSRs, and 320 amplified fragment length polymorphism markers in an F1 full-sib family. A total of 426 markers were assigned to 11 linkage groups, spanning 558.2 cM with an average interval of
1.3 cM and 94.7% of genome coverage. Segregation distortion was significant for 18.8% of the markers (P < 0.05), and distorted markers tended to occur on some genetic regions or linkage groups. Most growth-related quantitative
traits were highly significantly (P < 0.01) correlated, and principal component analysis obtained four principal components. Quantitative trait locus (QTL) analysis
identified three significant QTLs for two principal components, which explained 0.6–13.9% of the phenotypic variation. One
QTL for sex was detected on linkage group 6, and the inheritabilities of sex for parental alleles and maternal alleles on
that locus C15 are 39.8% and 0.01%, respectively. The constructed linkage map and determined QTLs can provide a tool for further
genetic analysis of the traits and be potential for marker-assisted selection in C. gigas breeding. 相似文献
17.
M. Gaudet V. Jorge I. Paolucci I. Beritognolo G. Scarascia Mugnozza M. Sabatti 《Tree Genetics & Genomes》2008,4(1):25-36
Black poplar (Populus nigra L.) is a tree of ecological and economic interest. A better knowledge of P. nigra genome is needed for an effective protection and use of its genetic resources. The main objective of this study is the construction
of a highly informative genetic map of P. nigra species including genes of adaptive and economic interest. Two genotypes originated from contrasted natural Italian populations
were crossed to generate a F1 mapping pedigree of 165 individuals. Amplification fragment length polymorphism (AFLP), simple sequence repeat (SSR), and
single nucleotide polymorphism (SNP) markers were used to genotype 92 F1 individuals, and the pseudo-test-cross strategy was applied for linkage analysis. The female parent map included 368 markers
(274 AFLPs, 91 SSRs, and 3 SNPs) and spanned 2,104 cM with 20 linkage groups, and the male parent map, including 317 markers
(205 AFLPs, 106 SSRs, 5 SNPs, and sex trait), spanned 2,453 cM with 23 main linkage groups. The sex, as morphological trait,
was mapped on the linkage group XIX of the male parent map. The generated maps are among the most informative in SSRs when
compared to the Populus maps published so far and allow a complete alignment with the 19 haploid chromosomes of Populus sequence genome. These genetic maps provide informative tools for a better understanding of P. nigra genome structure and genetic improvement of this ecologically and economically important European tree species.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
18.
Yang SY Saxena RK Kulwal PL Ash GJ Dubey A Harper JD Upadhyaya HD Gothalwal R Kilian A Varshney RK 《Journal of genetics》2011,90(1):103-109
With an objective to develop a genetic map in pigeon pea (Cajanus spp.), a total of 554 diversity arrays technology (DArT) markers showed polymorphism in a pigeon pea F2 mapping population of 72 progenies derived from an interspecific cross of ICP 28 (Cajanus cajan) and ICPW 94 (Cajanus scarabaeoides). Approximately 13% of markers did not conform to expected segregation ratio. The total number of DArT marker loci segregating
in Mendelian manner was 405 with 73.1% (P > 0.001) of DArT markers having unique segregation patterns. Two groups of genetic maps were generated using DArT markers.
While the maternal genetic linkage map had 122 unique DArT maternal marker loci, the paternal genetic linkage map has a total
of 172 unique DArT paternal marker loci. The length of these two maps covered 270.0 cM and 451.6 cM, respectively. These are
the first genetic linkage maps developed for pigeon pea, and this is the first report of genetic mapping in any grain legume
using diversity arrays technology. 相似文献
19.
Han OK Kaga A Isemura T Wang XW Tomooka N Vaughan DA 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2005,111(7):1278-1287
To make progress in genome analysis of azuki bean (Vigna angularis) a genetic linkage map was constructed from a backcross population of (V. nepalensis x V. angularis) x V.angularis consisting of 187 individuals. A total of 486 markers—205 simple sequence repeats (SSRs), 187 amplified fragment length polymorphisms
(AFLPs) and 94 restriction fragment length polymorphisms (RFLPs) —were mapped onto 11 linkage groups corresponding to the
haploid chromosome number of azuki bean. This map spans a total length of 832.1 cM with an average marker distance of 1.85 cM
and is the most saturated map for a Vigna species to date. In addition, RFLP markers from other legumes facilitated finding several orthologous linkage groups based
on previously published RFLP linkage maps. Most SSR primers that have been developed from SSR-enriched libraries detected
a single locus. The SSR loci identified are distributed throughout the azuki bean genome. This moderately dense linkage map
equipped with many SSR markers will be useful for mapping a range of useful traits such as those related to domestication
and stress resistance. The mapping population will be used to develop advanced backcross lines for high resolution QTL mapping
of these traits.
O.K. Han, A. Kaga, T. Isemura have contributed equally to this paper. 相似文献
20.
Riaz S Krivanek AF Xu K Walker MA 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2006,113(7):1317-1329
A framework genetic map based on genomic DNA-derived SSR, EST-derived SSR, EST-STS and EST-RFLP markers was developed using 181 genotypes generated from D8909-15 (female) × F8909-17 (male), the ‘9621’ population. Both parents are half siblings with a common female parent, Vitis rupestris ‘A. de Serres’, and different male parents (forms of V. arizonica). A total of 542 markers were tested, and 237 of them were polymorphic for the female and male parents. The female map was developed with 159 mapped markers covering 865.0 cM with an average marker distance of 5.4 cM in 18 linkage groups. The male map was constructed with 158 mapped molecular markers covering 1055.0 cM with an average distance of 6.7 cM in 19 linkage groups. The consensus ‘9621’ map covered 1154.0 cM with 210 mapped molecular markers in 19 linkage groups, with average distance of 5.5 cM. Ninety-four of the 210 markers on the consensus map were new. The ‘Sex’ expression locus segregated as single major gene was mapped to linkage group 2 on the consensus and the male map. PdR1, a major gene for resistance to Pierce’s disease, caused by the bacterium Xylella fastidiosa, was mapped to the linkage group 14 between markers VMCNg3h8 and VVIN64, located 4.3 and 2.7 cM away from PdR1, respectively. Differences in segregation distortion of markers were also compared between parents, and three clusters of skewed markers were observed on linkage groups 6, 7 and 14. 相似文献