Shedding new light on opsin evolution

Opsin proteins are essential molecules in mediating the ability of animals to detect and use light for diverse biological functions. Therefore, understanding the evolutionary history of opsins is key to understanding the evolution of light detection and photoreception in animals. As genomic data have appeared and rapidly expanded in quantity, it has become possible to analyse opsins that functionally and histologically are less well characterized, and thus to examine opsin evolution strictly from a genetic perspective. We have incorporated these new data into a large-scale, genome-based analysis of opsin evolution. We use an extensive phylogeny of currently known opsin sequence diversity as a foundation for examining the evolutionary distributions of key functional features within the opsin clade. This new analysis illustrates the lability of opsin protein-expression patterns, site-specific functionality (i.e. counterion position) and G-protein binding interactions. Further, it demonstrates the limitations of current model organisms, and highlights the need for further characterization of many of the opsin sequence groups with unknown function.     

Shedding new light on scleractinian coral recruitment

Studies of the distribution of scleractinian coral recruits within stacks of settlement plates at Orpheus Island and Lizard Island revealed that corals are recruited almost exclusively on the lower surfaces of the settlement plates. The absence of recruitment on the upper surfaces of the plates is attributed to the observed high levels of sediment on these surfaces. All hermatypic coral spat were found near the edge of the settlement plates, whereas ahermatypic corals were located towards the center. Growth and survivorship of hermatypic corals were dependent on the position of attachment, decreasing with distance from the edges of the plates. Survivorship of ahermatypic corals was uniformly high. Light levels on the lower surfaces of the plates within the stacks were shown to decay asymptotically as a function of distance from the plate edge. There was a highly significant non-linear relationship between relative light intensity on the settlement plates and the positions of coral spat. In the absence of evidence for selective hydrodynamic deposition of spat, these results suggest that light intensity is the most important factor in determining the position of attachment of coral spat on the underside of these plates.     

Shedding new light on the regulation of complementary chromatic adaptation

Complementary chromatic adaptation (CCA) is a light-dependent acclimation process that occurs in cyanobacteria and likely is related to increased fitness of these organisms in natural environments. Although CCA has been studied for over 40 years, significant advances in our understanding of the molecular foundations of CCA are still emerging. In this minireview, I explore recently reported developments that include novel insights into the molecular mechanisms utilized in the photoregulation of pigmentation and the molecular basis of light-dependent changes in cellular morphology, which are central elements of the process of CCA. I also discuss future avenues of study that are expected to lead to additional progress in our understanding of CCA and our general appreciation of light sensing and photomorphogenesis in cyanobacteria.     

Unit activity in the superior colliculus of the cat following passive eye movements.

Unit response in the superior colliculus and underlying structures has been examined in the choralose-anaesthetized cat following passive movement of an occluded eye. One group of units was sensitive to small saccadic movements, responded regardless of the initial postion of the eye, and in most instances responded to movements in opposit directions. A second numerically smaller group also responded when they eye was moved at saccadic velocity but only when the eye passed a fixed point. Such units with fixed positional thresholds were found following movements in both nasal and temporal directions as well as to both upward and downward movement. Both types of unit response were found after transection of the optic nerve and were also recorded when individual extraocular muscles were subjected to controlled stretch. It is assumed that most unit activity seen after passive movement of the occluded eye is due to activity in extraocular muscle receptors. In the deep layers of the superior colliculus responses to small eye movements were found to be due to the activation of very low threshold receptors sensitive to vibration in the facial area.     

Shedding light on the elusive role of endothelial cells in cytomegalovirus dissemination

Cytomegalovirus (CMV) is frequently transmitted by solid organ transplantation and is associated with graft failure. By forming the boundary between circulation and organ parenchyma, endothelial cells (EC) are suited for bidirectional virus spread from and to the transplant. We applied Cre/loxP-mediated green-fluorescence-tagging of EC-derived murine CMV (MCMV) to quantify the role of infected EC in transplantation-associated CMV dissemination in the mouse model. Both EC- and non-EC-derived virus originating from infected Tie2-cre ⁺ heart and kidney transplants were readily transmitted to MCMV-naïve recipients by primary viremia. In contrast, when a Tie2-cre ⁺ transplant was infected by primary viremia in an infected recipient, the recombined EC-derived virus poorly spread to recipient tissues. Similarly, in reverse direction, EC-derived virus from infected Tie2-cre ⁺ recipient tissues poorly spread to the transplant. These data contradict any privileged role of EC in CMV dissemination and challenge an indiscriminate applicability of the primary and secondary viremia concept of virus dissemination.     

Shedding light on sheddases: role in growth and development.

The extracellular domains of several integral membrane proteins are released from the cell surface by a group of enzymes known as "sheddases" through a process called "ectodomain shedding". Because many transmembrane growth and differentiation factors, including members of the epidermal growth factor (EGF) family that play a crucial role in development, require ectodomain shedding for proper action in vivo, proteolysis is now viewed as a regulatory mechanism in the developing embryos. Two recent reports by Zhao et al. provide evidence for the role of cell surface proteolysis by an ADAM (a disintegrin and metalloprotease) in the development of murine lung. Inhibition of tumor necrosis factor-alpha converting enzyme (TACE, ADAM17) by the hydroxamic acid-based metalloprotease inhibitor (TAPI), or a targeted mutation in Zn(2+)-binding domain of TACE, disrupts two essential epithelial functions in lung development: branching morphogenesis and cytodifferentiation. Evidence for the role of ADAMs as sheddases in development and growth factor signaling is discussed.     

Shedding light on plant litter decomposition: advances, implications and new directions in understanding the role of photodegradation

Litter decomposition contributes to one of the largest fluxes of carbon (C) in the terrestrial biosphere and is a primary control on nutrient cycling. The inability of models using climate and litter chemistry to predict decomposition in dry environments has stimulated investigation of non-traditional drivers of decomposition, including photodegradation, the abiotic decomposition of organic matter via exposure to solar radiation. Recent work in this developing field shows that photodegradation may substantially influence terrestrial C fluxes, including abiotic production of carbon dioxide, carbon monoxide and methane, especially in arid and semi-arid regions. Research has also produced contradictory results regarding controls on photodegradation. Here we summarize the state of knowledge about the role of photodegradation in litter decomposition and C cycling and investigate drivers of photodegradation across experiments using a meta-analysis. Overall, increasing litter exposure to solar radiation increased mass loss by 23% with large variation in photodegradation rates among and within ecosystems. This variation was tied to both litter and environmental characteristics. Photodegradation increased with litter C to nitrogen (N) ratio, but not with lignin content, suggesting that we do not yet fully understand the underlying mechanisms. Photodegradation also increased with factors that increased solar radiation exposure (latitude and litter area to mass ratio) and decreased with mean annual precipitation. The impact of photodegradation on C (and potentially N) cycling fundamentally reshapes our thinking of decomposition as a solely biological process and requires that we define the mechanisms driving photodegradation before we can accurately represent photodegradation in global C and N models.     

Shedding new light on the life cycle of mackerel icefish in the Southern Ocean

Mackerel icefish have a widespread distribution in the Atlantic and Indian Ocean sectors of the low-Antarctic region. Biological characteristics differ considerably between populations in the southern Scotia Arc and those living further to the north. Fish living in the north mature 1 year earlier than in the south. They have a much shorter life span and die after they have spawned two to three times. The number of eggs produced per gram of body mass is higher in the north. Stocks have declined in most parts of the distributional range due to the impact of fishing and due to natural causes. Increases in populations of Antarctic fur seals at South Georgia and parts of the Indian Ocean appear to have led to increased predation on stocks of icefish. Shifts in hydrological regimes in the northern part of the distributional range have either started to lead or will lead to deteriorating living conditions for mackerel icefish in the near future. Fish stock assessment needs to take these constraints into consideration when providing advice on total allowable catches for fisheries management.     

Shedding light on melanoma

Not just confined to sunny places, the incidence of melanoma has been rising in all fair-skinned populations around the world. How much is known about the causes of this disease, and can this knowledge be applied to preventive strategies?