Prochlorococcus Ecotype Abundances in the North Atlantic Ocean As Revealed by an Improved Quantitative PCR Method

The cyanobacterium Prochlorococcus numerically dominates the photosynthetic community in the tropical and subtropical regions of the world's oceans. Six evolutionary lineages of Prochlorococcus have been described, and their distinctive physiologies and genomes indicate that these lineages are “ecotypes” and should have different oceanic distributions. Two methods recently developed to quantify these ecotypes in the field, probe hybridization and quantitative PCR (QPCR), have shown that this is indeed the case. To facilitate a global investigation of these ecotypes, we modified our QPCR protocol to significantly increase its speed, sensitivity, and accessibility and validated the method in the western and eastern North Atlantic Ocean. We showed that all six ecotypes had distinct distributions that varied with depth and location, and, with the exception of the deeper waters at the western North Atlantic site, the total Prochlorococcus counts determined by QPCR matched the total counts measured by flow cytometry. Clone library analyses of the deeper western North Atlantic waters revealed ecotypes that are not represented in the culture collections with which the QPCR primers were designed, explaining this discrepancy. Finally, similar patterns of relative ecotype abundance were obtained in QPCR and probe hybridization analyses of the same field samples, which could allow comparisons between studies.     

Distributions of calcareous dinoflagellate cysts in surface sediments of the western equatorial Atlantic Ocean,and their potential use in palaeoceanography

Only very few studies focus on recent calcareous dinoflagellate cyst diversity, geographic distribution and ecology, so that information on the distribution patterns and environmental affinities of individual cyst species is extremely limited. This information is, however, essential if we want to use calcareous dinoflagellate cysts for palaeoenvironmental reconstruction. Surface sediment samples from the generally oligotrophic western equatorial Atlantic Ocean, offshore northeast Brazil, were therefore quantitatively analysed for their calcareous dinoflagellate cyst content, including the calcareous vegetative coccoid Thoracosphaera heimii. Seven calcareous dinoflagellate cyst species/morphotypes and T. heimii were encountered in high concentrations throughout the area. Substantial differences in the distribution patterns were observed. The highest concentrations of cysts are found in sediments of the more oligotrophic, oceanic regions, beyond the influence of Amazon River discharge waters. Dinoflagellates producing calcareous cysts thus appear to be capable of surviving low nutrient concentrations and produce large numbers of cysts in relatively stable and predictable environments affected by minimal seasonality. To test for the environmental affinities of individual species, distribution patterns in surface sediments were compared with temperature, salinity, density and stratification gradients within the upper water column (0–100 m) over different times of the year, using principal components analysis and redundancy analysis. T. heimii and four of the seven encountered cyst species (Sphaerodinella? albatrosiana, two morphotypes of Sphaerodinella? tuberosa and Scrippsiella regalis) relate to these parameters significantly and the variations in the cyst associations appear to be associated with the different surface water currents characterising the area. The results imply that calcareous dinoflagellate cyst distributions can potentially be used to distinguish between different open oceanic environments and they could, therefore, be useful in tracing water mass movements throughout the late Quaternary.     

High Abundances of Aerobic Anoxygenic Photosynthetic Bacteria in the South Pacific Ocean

Little is known about the abundance, distribution, and ecology of aerobic anoxygenic phototrophic (AAP) bacteria, particularly in oligotrophic environments, which represent 60% of the ocean. We investigated the abundance of AAP bacteria across the South Pacific Ocean, including the center of the gyre, the most oligotrophic water body of the world ocean. AAP bacteria, Prochlorococcus, and total prokaryotic abundances, as well as bacteriochlorophyll a (BChl a) and divinyl-chlorophyll a concentrations, were measured at several depths in the photic zone along a gradient of oligotrophic conditions. The abundances of AAP bacteria and Prochlorococcus were high, together accounting for up to 58% of the total prokaryotic community. The abundance of AAP bacteria alone was up to 1.94 × 10⁵ cells ml⁻¹ and as high as 24% of the overall community. These measurements were consistent with the high BChl a concentrations (up to 3.32 × 10⁻³ μg liter⁻¹) found at all stations. However, the BChl a content per AAP bacterial cell was low, suggesting that AAP bacteria are mostly heterotrophic organisms. Interestingly, the biovolume and therefore biomass of AAP bacteria was on average twofold higher than that of other prokaryotic cells. This study demonstrates that AAP bacteria can be abundant in various oligotrophic conditions, including the most oligotrophic regime of the world ocean, and can account for a large part of the bacterioplanktonic carbon stock.     

Population genetic studies of the Atlantic halibut in the North Atlantic Ocean

Significant variation in frequency distribution of electrophoretically detectable protein variants between samples of Atlantic halibut Hippoglossus hippoglossus showed that the halibut from northern Norway and from the Faroes–Iceland–Greenland region may not belong to one panmictic population.     

Large-scale species-richness gradients in the Atlantic Ocean

The increase in species richness from the poles to the Equator has been observed in numerous terrestrial and aquatic taxa. A number of different hypotheses have been put forward as explanations for this trend, e.g. area and energy availability. However, whether these hypotheses apply to large spatial scales in marine environments remains unclear. The present study shows a clear latitudinal gradient from high to low latitude (from 80 degrees N to 70 degrees S) in marine species richness for 6643 species (fishes and invertebrates) in 10 different taxa dwelling in benthic and pelagic habitats on both sides of the Atlantic. The patterns in benthic taxa are strongly influenced by coastal hydrographic processes, with marked peaks and troughs, and consequently the gradients are not symmetric along both Atlantic sides. Pelagic taxa show a plateau-shaped distribution and the influence from coastal events on gradients could not be demonstrated. The relationships between species richness and different environmental factors indicate that area size does not explain the latitudinal pattern in benthic species richness on a large spatial scale. Sea-surface temperature (positive relationship) is the best predictor of this pattern for benthic species, and nitrate concentration (negative relationship) is the best predictor for pelagic species. The results call into question the existence of a single primary cause that would explain the pattern in marine species richness on a large spatial scale.     

Size-fractionated Primary Production in the South Atlantic and Atlantic Sectors of the Southern Ocean

Results are presented from size fractionated chlorophyll a (Chla) and primary production studies along a transect between Antarcticaand southern Africa during the second South African AntarcticMarine Ecosystem Study (SAAMES II), conducted in late australsummer (January to February) 1993. Total integrated Chl a alongthe transect was highest in the vicinity of the Marginal IceZone (MIZ) and Antarctic Polar Front (APF). At these stations,integrated Chl a biomass was always >25 mg Chl a m^–2and was dominated by microphytoplankton. Although nominal increasesinChl a biomass were also associated with the Subantarctic Front(SAF) and Subtropical Convergence (STC), total Chl a biomassin these regions was dominated by nanophytoplankton. Withinthe inter-frontal regions, total integrated Chl a biomass waslower, generally <25 mg Chl a m^–2, and was always dominatedby nanophytoplankton. An exception was found in the AgulhasReturn Current (ARC) where picophytoplankton dominated. Totaldaily integrated production along the transect ranged between60 and 436 mg C m^–2 day^–1. Elevated production rateswere recorded at stations occupied in the vicinity of the MIZand at all the major oceanic frontal systems. The contributionsof the various size fractions to total daily production displayedthe same spatial pattern as integrated biomass, with microphytoplanktonbeing the most important contributor in areas characterizedby elevated phytoplankton biomass. Outside these regions, nanophytoplanktondominated the total phytoplankton production. Again, an exceptionwas found in the ARC north of the STC where picophytoplanktondominated total production. There, the lowest production alongthe entire transect was recorded, with total daily integratedproduction always <90 mg C m^–2 day^–1. The increasedproduction rates recorded in the MIZ appeared to result fromincreased water column stability as indicated by a shallow mixed-layerdepth. Within the inter-frontal regions, the existence of adeep mixed layer appeared to limit phytoplankton production.Low silicate concentrations in the waters north of the APF mayalso have limited the growth of large microphytoplankton.     

Primary organic production in the Atlantic Ocean

Summary The determination of 24-h primary organic production of phytoplankton photosynthesis under 1 m² in the vast areas of open parts of the Atlantic ocean was made by using isopic technique. It was stated that the production is maximal in coastal waters of Europe (0,8–1,3 g C/m²) and especially of the west coast of Africa (to 3,4 g C/m²). Middle rate of production was observed in the North Atlantic Current, and the Equatorial Current (0,2–0,6 g C/m²). Relatively low organic production was found in the tropical waters of the Equatorial Current (about 0,1 g C/m²). Production in the transparent waters of the Sargasso sea was very low (0,03–0,05 g C/m²). Upper data corresponds well with that which had been collected by the Galathea expedition in the same regions of the Ocean. Definite correlation between the rate of primary production and standing crop of crustacean zooplankton was observed in tropical waters.     

Benthic ostracods and deep water-masses in the Atlantic Ocean

Ostracod faunas at six locations are compared, and related to distributions in an Atlantic Ocean-wide data base. Five, widely developed, vertical faunal sequences are recognised at particular levels within deep water-masses: Henryhowella Fauna (lower part of Antarctic Intermediate Water); Krithe Fauna (Upper North Atlantic Deep Water); Poseidonamicus-Bosquetina Fauna (upper part of Lower NADW); Dutoitella Fauna (lower part of Lower NADW); Legitimocythere Fauna (Antarctic Bottom Water). These faunas are correlated with previously established deep water benthic foraminiferal assemblages, and their possible palaeo-oceanographic use is discussed.     

Modern whaling in Britain and the north-east Atlantic Ocean

Modern whaling, using an explosive harpoon fired from a steam catcher-boat to kill the fast-swimming rorquals, began from shore whaling stations in northern Norway in the 1860s. It spread to Iceland, the Faeroe Islands and Spitsbergen, before reaching the British Isles in 1903.
Whaling took place from four stations in the Shetland Islands, one in the Outer Hebrides, and two in Ireland, before the First World War. Fin whales were the main species caught but Blue, Humpback, Sei, Right, Sperm and Bottle-nosed whales were also taken. Four stations re-opened in 1920, but from 1923 onwards only two continued to operate and whaling ceased in 1929, though the Hebridean station worked again for two seasons in 1950–1951.
The species composition of catches at the Hebridean and Irish stations was very similar and different from that of the stations in the Shetland Islands where few Blue whales and Right whales were taken. There is evidence that Fin whales were being overfished on the Shetland Islands whaling grounds at an early date, and that Blue whales and Right whales, but not Fin whales, declined in numbers on the Hebridean grounds.
The history of modern whaling in the north-east North Atlantic region as a whole indicates that the stocks of Blue, Humpback and Right whales were not large enough to support continuous whaling on the scale which took place there. The development of whaling since 1945 supports the view that there are separate populations of Fin whales in the region. The numbers of this species have declined on the whaling grounds of the Faeroe Islands and western Norway, and possibly also of north Norway, but not on the Icelandic grounds where there is no evidence of overfishing.     

Fading bioluminescence of the tropical Atlantic Ocean

Bioluminescence intensity acts as the indicator of the functional state of a plankton community. Data on bioluminescence intensity, zooplankton biomass, and chlorophyll a from the expeditions to the tropical and subtropical Atlantic Ocean were analyzed. The regression models implied a ~10-fold decline of bioluminescence intensity [bioluminescence potential (BP)] and zooplankton biomass for the 46 year time range from 1970 to 2016. The correlation was low between chlorophyll a (the indicator of phytoplankton biomass) and BP, but it was significant for the zooplankton biomass BP annual time series. The decline of BP was associated with the decreasing abundance of bioluminescent zooplankton, and increasing global warming-driven temperature.     

Phylogeny and biogeography of Anthopleura in the North Atlantic Ocean

Two species of Anthopleura, A. ballii and A. thallia, co-occur in Northern Europe with Bunodosoma biscayensis, a species closely allied to Anthopleura. The historical factors underlying their distribution are here investigated as part of a preliminary phylogenetic analysis of morphological data. Based on this analysis, Bunodosoma is nested within Anthopleura, and B. biscayensis is more closely related to members of Anthopleura than to other members of Bunodosoma. Because B. biscayensis also has adhesive verrucae, rather than non-adhesive, rounded vesicles, it is transferred to Anthopleura.The tree consists of two major clades, each of which includes species from the Atlantic and the Pacific. The tree shows geographic structure: one clade includes species found only in the Northern Hemisphere, and the other includes widespread species and species found only in the Southern Hemisphere. Although all of the European species of Anthopleura are part of the Northern Hemisphere clade, none are one another’s closest relative.     

Distribution of chiorophylls and phaeopigments in the Northwestern Atlantic Ocean

During a cruise in the Northwestern Atlantic the distributionsof chlorophylls and phaeopigments were investigated in relationto mesoscale features by high-performance liquid chromatography.Samples were collected from hydrographic Stations and from twoContinuous underway sampling systems fished simultaneously atthe surface (2 m) and at deeper (30–90 m) depths. Highestpigment concentrations were associated with the transitionalzones between Slope Water, the Gulf Stream and Northern SargassoSea. Chlorophyll b occurred in 47% of the samples analyzed andthe dominant chlorophyll a degradation product was phaeophorbidea. Chlorophyllide a was usually found at low concentrationsand phaeophytin a levels were undetectable. Concentrations ofthe various chlorophylls and their degradation products wereused to infer Changes in taxonomic composition, phytoplanktonbiomass and zooplankton grazing pressure across several frontalzones.     

Abundant proteorhodopsin genes in the North Atlantic Ocean

Proteorhodopsin (PR) is a light-driven proton pump that has been found in a variety of marine bacteria, including Pelagibacter ubique , a member of the ubiquitous SAR11 clade. The goals of this study were to explore the diversity of PR genes and to estimate their abundance in the North Atlantic Ocean using quantitative polymerase chain reaction (QPCR). We found that PR genes in the western portion of the Sargasso Sea could be grouped into 27 clusters, but five clades had the most sequences. Sets of specific QPCR primers were designed to examine the abundance of PR genes in the following four of the five clades: SAR11 ( P. ubique and other SAR11 Alphaproteobacteria ), BACRED17H8 ( Alphaproteobacteria ), HOT2C01 ( Alphaproteobacteria ) and an uncultured subgroup of the Flavobacteria . Two groups (SAR11 and HOT2C01) dominated PR gene abundance in oligotrophic waters, but were significantly less abundant in nutrient- and chlorophyll-rich waters. The other two groups (BACRED17H8 and Flavobacteria subgroup NASB) were less abundant in all waters. Together, these four PR gene types were found in 50% of all bacteria in the Sargasso Sea. We found a significant negative correlation between total PR gene abundance and nutrients and chlorophyll but no significant correlation with light intensity for three of the four PR types in the depth profiles north of the Sargasso Sea. Our data suggest that PR is common in the North Atlantic Ocean, especially in SAR11 bacteria and another marine alphaproteobacterial group (HOT2C01), and that these PR-bearing bacteria are most abundant in oligotrophic waters.     

Deep-sea pelagic ichthyonekton diversity in the Atlantic Ocean and the adjacent sector of the Southern Ocean

Aim Deep‐sea pelagic diversity is poorly understood. Local (SL) and regional (SR) ichthyonekton species richness are presented and analysed with respect to local and regional environmental factors, and biogeographical processes. Location Sixty‐six stations from the Atlantic Ocean and adjacent sector of the Southern Ocean, 65° N to 57° S. Methods Estimation of SL by means of rarefaction. Stepwise evaluation of SL and SR relationships by means of the second‐order corrected Akaike information criterion (AICc) after locally weighted scatterplot smoothing (LOESS) and linear fitting, analysis of saturation effects by means of slopes of species accumulation curves (log–log plots). Results Latitudinal gradients were present for SL and SR, and were asymmetric between the Northern and Southern hemispheres. Relatively low species richness was encountered for the Southern Ocean. Asymmetry at the regional level by means of higher SR was attributed to area effects in the South Atlantic. Log–log plots indicated saturation of local assemblages and dependence on environmental factors. SL was related to productivity; this relationship was hump‐shaped. SR was positively related to area size and negatively to seasonality of production. Biogeographical effects were indicated in that SR peaks coincided with overlap zones of boreal and tropical faunas as a consequence of historical faunal exchange processes. Main conclusions The stepwise approach allowed for distinction between effects of area size, productivity and biogeographical processes on diversity at local and regional scales. Productivity in particular is important in two ways. At the local scale, the link of productivity to SL is explained by a successional‐functional hypothesis of resource utilization, whereas the seasonality effect for SR reinforces the hypothesis of dependence of deep‐sea fishes on seasonality of production through changes of life‐history traits. The causes of low Antarctic faunal diversity remained unresolved.