广东普通野生稻对水稻白叶枯病的抗性评价及分析

本研究通过抗性鉴定、分子标记和方差分析,评价与分析了广东普通野生稻对白叶枯病的抗性。结果表明广东普通野生稻对广东省典型的致病菌株Ⅳ型小种表现为抗或高抗,对PXO99小种的抗性反应差异较大,表现出从中感到抗病。用已知功能标记做鉴定,结果显示：20个普通野生稻居群中,3个居群能够扩增出Xa21抗病基因条带;4个居群能够扩增出Xa4抗病基因条带;5个居群能够扩增出Xa7、Xa27抗病基因条带;Xa23、Xa10、Xa26抗病基因条带分别能够在11、12和16个居群中被扩增出;19个居群能检测出Xa1的抗病基因条带,所有居群均不含xa5、xa13抗病基因。抗谱分析发现,HY2、DB2和GZ2 3个居群中的5份野生稻资源可能含有新的抗性基因。方差分析结果表明,对于Ⅳ型小种,高州普通野生稻的抗性水平显著高于化州、雷州和台山普通野生稻;而化州、台山普通野生稻的抗性水平显著低于陆丰普通野生稻。对于PXO99小种,广东不同县市间的抗性水平未呈现出显著性差异。本研究为进一步发掘和利用广东普通野生稻的优异抗白叶枯病基因提供了材料基础和理论依据。     

云南野生稻中的抗白叶枯病基因Xa21的鉴定

水稻白叶枯病是水稻生产上的主要细菌病害之一。从野生稻中发掘优异的水稻白叶枯病抗性材料,可以拓宽栽培稻抗白叶枯病遗传基础。经过温室接菌鉴定和PCR标记分析,对云南野生稻进行Xa21基因的检测鉴定。温室接菌鉴定表明,云南野生稻对广谱致病小种PX099及云南强致病菌Y8具有较好的抗性能力,特别是疣粒野生稻对致病菌株达到免疫程度;PCR标记分析表明,云南野生稻不含有Xa21基因,但含有与Xa21基因某些区域同源的片段。本研究结果为寻找新的抗源材料及快速发掘利用云南野生稻中的抗白叶枯病基因提供理论依据。     

云南野生稻抗白叶枯病类Xa21基因的鉴定

水稻白叶枯病是水稻生产上的主要细菌病害之一。从野生稻中发掘优异的水稻白叶枯病抗性材料,可以拓宽栽培稻抗白叶枯病遗传基础。经过温室接菌鉴定和PCR标记分析,对云南野生稻进行Xa21基因的检测鉴定。温室接菌鉴定表明,云南野生稻对广谱致病小种PX099及云南强致病菌Y8具有较好的抗性能力,特别是疣粒野生稻对致病菌株达到免疫程度;PCR标记分析表明,云南野生稻不含有Xa21基因,但含有与Xa21基因某些区域同源的片段。本研究结果为寻找新的抗源材料及快速发掘利用云南野生稻中的抗白叶枯病基因提供理论依据。     

云南野生稻中Xa21基因外显子II的分离及序列分析

Xa21是已经分离克隆的一个具有广谱抗性的水稻白叶枯病抗性基因,根据已克隆的白叶枯病抗性基因Xa21外显子II序列设计特异性引物对云南三种野生稻及其它稻种进行PCR扩增。结果表明只有普通野生稻（景洪普通野生稻和元江普通野生稻）及长雄野生稻中扩增到了长400 bp的目的片段,而疣粒野生稻和药用野生稻及栽培稻中均没有扩增到目的片段。通过序列比较发现所克隆的序列同长雄野生稻的氨基酸序列变化是随机的。     

云南野生稻中Xa21基因外显子Ⅱ的分离及序列分析

Xa21是已经分离克隆的一个具有广谱抗性的水稻白叶枯病抗性基因,根据已克隆的白叶枯病抗性基因Xa21外显子Ⅱ序列设计特异性引物对云南3种野生稻及其他稻种进行PCR扩增.结果表明,只有普通野生稻(景洪普通野生稻和元江普通野生稻)及长雄野生稻中扩增到了长400bp的目的片段,而疣粒野生稻和药用野生稻及栽培稻中均没有扩增到目的片段.通过序列比较发现所克隆的序列同长雄野生稻的氨基酸序列变化是随机的.     

体细胞突变体HX-3抗水稻白叶枯病基因的鉴定

以感病杂交稻恢复系明恢63的成熟胚为外植体,利用离体筛选技术获得了抗水稻白叶枯病细胞突变体HX-3。连续8年以我国长江流域白叶枯病代表菌析浙173（IV型）对HX-3的R1到R9代进行抗性鉴定,HX-3的抗病性可以稳定遗传。抗性遗传分析表明HX-3的抗性由1对显性核基因控制。1999～2000年连续两年利用我国、菲律宾和日本的32个水稻白叶枯病菌株,测定HX-3及IRBB1等13个具不同显性抗病基因的近等基因系抗性,HX-3抗谱广,且与已知显性抗病基因的抗谱不同。在此基础上,以抗白叶枯病近等基因系IRBB4、IRBB7、CBB12和IRBB21和HX-3杂交,进行等位性分析,4个杂交组合的F2代均出现抗、感分离,说明HX-3与这4个基因不等位。综合以上研究结果,HX-3具有1个新的抗白叶枯病基因,暂命名为Xa-25(t）。     

水稻品种资源对细菌性条斑病菌的抗性评价

选育和应用抗病品种是防治水稻细菌性病害最经济、有效的方法,抗性资源的筛选及利用是选育抗病品种的前提。本研究利用苗期喷雾法对中国59个水稻品种、318份国外稻种资源以及13个抗白叶枯病近等基因系进行了细菌性条斑病抗性评价。测定的59个中国水稻品种对测试的细菌性条斑病病原均表现出感病;在鉴定的318个国外稻种资源中,抗细菌性条斑病的材料有82个,其中高抗和抗的稻种资源有POPONG、IR63372-8、WEDA HEENATI、BALAYAN、GHARIBE等17份;在测试的13个抗白叶枯病近等基因系中,仅有IRBB5表现出抗细菌性条斑病,对白叶枯病抗谱较广的IRBB21、CBB23对测试的病菌表现出高感。应用SPSS统计软件,对82个抗细菌性条斑病的稻种资源和13个抗白叶枯病近等基因系的细菌性条斑病和白叶枯病的抗性相关性分析结果分别为r值0. 103和P值0. 358( 0. 05)、r值0. 527和P值0. 064( 0. 05),表明测试稻种对两病的抗性没表现出相关性。利用xa5基因功能标记,对79个抗细菌性条斑病资源进行了xa5基因检测,结果显示有30个品种含有xa5基因,其余49个不含xa5基因。本研究筛选出的49个抗性稻种资源对抗细菌性条斑病基因的挖掘以及品种的创制具有重要的价值。     

水稻白叶枯病候选抗性基因SHNLR的RGAs克隆及分析

旨在从含有疣粒野生稻抗白叶枯病基因的新种质SH5、SH76基因组中克隆抗病基因。利用RGAs法得到1个NBS-LRR类同源基因,暂命名为SHNLR(登录号为JF934724)。结果表明,SHNLR的开放阅读框长度为3 105 bp,编码1 034个氨基酸,含有CC、NB-ARC与LRR结构域,具备CC-NBS-LRR类植物抗病基因的结构特征。BLASTn和BLASTp比对显示SHNLR是单拷贝基因,未发现同源性较高且功能已知的基因,仅NBS保守域序列与番茄Prf基因的相似度最高。对SHNLR基因电子定位,发现其位于水稻第11号染色体的长臂末端,但与11号染色体上已定位或克隆的8个白叶枯病抗性基因具有不同序列或处于不同的位置。半定量RT-PCR分析表明,SHNLR在抗病新种质叶片中的表达明显受到白叶枯病菌Zhe173的诱导。因此推测SHNLR可能是1个与抗白叶枯病相关的R基因。     

国际水稻白叶枯病圃种质资源在华南的抗性评价和利用

在华南生态稻区鉴定评价2270份国际水稻品种资源对白叶枯病的抗性,结果表明参试材料对华南优势致病菌系Ⅳ型菌的抗性,高抗（1级）500个占22.03%,抗（3级）617个占27.18%,中感（5级）355个占15.64%,感（7级）373个占16.43%,高感（9级）425个占18.72%;对华南强毒菌系Ⅴ型菌的抗性,高抗（1级）131个占8.23%,抗（3级）322个占20.23%,中感（5级）292个占18.34%,感（7级）422个占26.50%,高感（9级）425个占26.70%;对Ⅳ和Ⅴ型菌双抗的有411份,占25.82%。 筛选出BG1222、IRBB5、IRBB7、IRBB203等一批抗病兼有较好农艺性状的水稻品种资源抗性遗传分析,发现BG1222携带抗病新基因,并定位于第1染色体上;抗源创新利用,育成一批优质抗病新品系,其中利用IRBB5（xa5）育成华南首个抗白叶枯病强毒菌系Ⅴ型菌优质水稻新品种白香占。     

分子标记辅助选择聚合Xa23,Pi9和Bt基因

利用分子标记辅助选择将高抗水稻白叶枯病的Xa23基因、广谱高抗稻瘟病的Pi9基因、抗水稻螟虫和稻纵卷叶螟的Bt基因聚合到同一株系中,获得了三基因聚合的纯合株系。病、虫抗性鉴定结果显示：聚合了Xa23、Pi9和Bt基因的株系HB1471、HB1473能同时抗白叶枯病、稻瘟病和稻纵卷叶螟;与Xa23、Pi9基因的供体材料L10相比,对白叶枯病和稻瘟病的抗谱相同、抗性水平相当;对稻纵卷叶螟抗性与Bt基因的供体亲本MH63-Bt水平相当。Xa23、Pi9和Bt三基因纯合株系可以作为水稻育种的多抗供体材料。     

分子标记辅助选择改良蜀恢527对白叶枯病的抗性

以含抗性基因Xa2 1和Xa4的抗白叶枯病近等基因系IRBB6 0为供体亲本 ,以不抗白叶枯病强恢复系蜀恢5 2 7为轮回受体亲本 ,连续回交 3代 ,自交 1代 ,在分离世代用分别与Xa2 1和Xa4紧密连锁的标记pTA2 48和MP12对目标基因Xa2 1和Xa4进行辅助选择 ,直至BC3F2 。在BC3F2 中选出株型、粒型、播抽期等农艺性状与蜀恢 5 2 7相似且pTA2 48和MP12的扩增带型纯合的 10个单株 ,用 10 0个RAPD和 12 0对SSR引物进行背景选择 ,决选出 5个单株 ,作为改良的蜀恢 5 2 7。抗性分析表明 ,这些改良的蜀恢 5 2 7株系对我国菌系CⅠ CⅦ和来自菲律宾的P1 和P6 均表现抗性 ,说明抗性基因已成功导入蜀恢 5 2 7中并表达。同时对pTA2 48和MP12在亲本间的多态性和选择的准确性也进行了分析 ,结果显示这两个标记在亲本间的多态性明显 ,共显性 ;选择的准确率分别在 97%和 83%以上 ,可以用其进行标记辅助选择。     

Analysis of Pathogenic Diversity of the Rice Bacterial Blight Pathogen (Xanthomonas oryzae pv. oryzae) in the Andaman Islands and Identification of Effective Resistance Genes

Bacterial blight (BB) caused by Xanthomonas oryzae pv. oryzae (Xoo) is a major disease of rice in the tropics for which genetic resistance in the host plants is the only effective solution. This study aimed at identification of resistance gene combinations effective against Xoo isolates and fingerprinting of the Xoo isolates of Andaman Islands (India). Here, we report the reaction of 21 rice BB differentials possessing Xa1 to Xa21 genes individually and in different combinations to various isolates of pathogen collected from Andaman Islands. Pathological screening results of 14 isolates revealed that among individual genes tested across 2 years, Xa4, Xa7 and Xa21 conferred resistance reaction across all isolates, whereas among combinations, IRBB 50 (Xa4 + xa5), IRBB 52 (Xa4 + Xa21) and IRBB 60 (Xa4 + xa5 + xa13 + Xa21) conveyed effective resistance against tested isolates. The nature of genetic diversity among four isolates selected on the basis of geographical isolation in the islands was studied through DNA finger printing. The RAPD primers S111, S119, S1117, S1109, S1103, S109 and S105 were found to be better indicators of molecular diversity among isolates than JEL primers. The diversity analysis grouped 14 isolates into three major clusters based on disease reaction wherein isolate no. 8 was found the most divergent as well as highly virulent. The remaining isolates were classified into two distinct groups. The importance of the study in the context of transfer of resistance gene(s) in the local cultivars specifically for tropical island conditions is presented and discussed.     

Field performance of Xa21 transgenic indica rice (Oryza sativa L.), IR72

Based on the characterization of the resistance phenotype and molecular analysis, several homozygous lines carrying Xa21 against the bacterial blight (BB) pathogen were obtained from previously transformed indica rice, IR72. The homozygous line, T103-10, with the best phenotype and seed-setting, was repeatedly tested under normal field conditions to evaluate its levels of resistance to the BB pathogen in Wuhan, China, in 1998 and 1999. The isolates of Xanthomonas oryzae pv oryzae (Xoo) used in this experiments were PXO61, PXO79, PXO99 and PXO112 isolated from the Philippines, T2 isolated from Japan, and Zhe173 isolated from China. The results demonstrated that the transgenic homozygous line expressed the same resistance spectrum, but with a shorter lesion length to each inoculated isolates as the lesion length of the Xa21 donor line IRBB21. The non-transformed control IR72 carrying Xa4 was resistant to PXO61, PXO112, Zhe173 and T2, but susceptible to PXO99 and PXO79. The negative control variety IR24 was susceptible to all isolates under field conditions. The results demonstrated clearly that the Xa21 transgene led to an excellent field performance of the introduced bacterial blight resistance trait on the recipient plants. The yield performance of this transgenic homozygous line, T103-10, is comparable with that of the control under field conditions. Received: 2 August 1999 / Accepted: 3 November 1999     

Combining bacterial blight resistance and Basmati quality characteristics by phenotypic and molecular marker-assisted selection in rice

Bacterial Blight (BB) caused by Xanthomonas oryzae pv. oryzae is a major disease of rice in tropical Asia. Since all the Basmati varieties are highly susceptible and the disease is prevalent in the entire Basmati growing region of India, BB is a severe constraint in Basmati rice production. The present study was undertaken with the objective of combining the important Basmati quality traits with resistance to BB by a combination of phenotypic and molecular marker-assisted selection (MAS). Screening of 13 near-isogenic lines of rice against four isolates of the pathogen from Basmati growing regions identified the Xa4, xa8, xa13 and Xa21 effective against all the isolates tested. Two or more of these genes in combination imparted enhanced resistance as expressed by reduced average lesion length in comparison to individual genes. The two-gene pyramid line IRBB55 carrying xa13 and Xa21 was found equally effective as three/four gene pyramid lines. The two BB resistance genes present in IRBB55 were combined with the Basmati quality traits of Pusa Basmati-1 (PB-1), the most popular high yielding Basmati rice variety used as recurrent parent. Phenotypic selection for disease resistance, agronomic and Basmati quality characteristics and marker-assisted selection for the two resistance genes were carried out in BC₁F₁, BC₁F₂ and BC₁F₃ generations. Background analysis using 252 polymorphic amplified fragment length polymorphism (AFLP) markers detected 80.4 to 86.7% recurrent parent alleles in BC₁F₃ selections. Recombinants having enhanced resistance to BB, Basmati quality and desirable agronomic traits were identified, which can either be directly developed into commercial varieties or used as immediate donors of BB resistance in Basmati breeding programs.     

Evaluation of resistance genes in rice against local isolates of Xanthomonas oryzae pv. oryzae in Punjab Province of Pakistan

Absence of resistance/tolerance against bacterial leaf blight (BLB), incited by Xanthomonas oryzae pv. oryzae, in famous basmati varieties is one of the main reason for BLB epidemic in Punjab in 2007–2008. For developing resistance against BLB, the response of 26 IRBB lines of IRRI including 10 near isogenic lines (NILs) and 16 gene pyramids carrying two to five resistance genes (Xa series) was evaluated against 61 indigenous Xoo isolates under artificial inoculation field conditions. None of the NILs or gene pyramid provides complete protection against all the isolates. However, Xa21 and xa13 were found resistant against the majority of Xoo isolates, followed by Xa14 and Xa7. Of the 16 gene pyramids used in this study, IRBB-54 (Xa5 + Xa21), IRBB-55 (Xa13 + Xa21) followed by IRBB-58 (Xa4 + Xa13 + Xa21) were found effective against the majority of the Xoo isolates. These resistance genes (individually and in combinations) can be incorporated for the improvement of basmati rice cultivars cultivated in Punjab province of Pakistan. Effectiveness of gene combination supports the strategy of pyramiding appropriate resistance genes. Newly identified resistant genes may also be evaluated for achieving broad spectrum resistance against more Xoo isolates of the area.     

Bacterial leaf blight resistance genes (Xa21, xa13 and xa5) pyramiding through molecular marker assisted selection into rice cultivars

Marker assisted selection was employed to pyramid three bacterial blight resistance genes Xa21, xa13 and xa5 into high yielding susceptible rice cultivars ADT43 and ADT47. With the assistance of PCR markers, homozygous and heterozygous genotypes were identified in F₂ generation of two crosses (ADT43 × IRBB60 and ADT47 × IRBB60) and goodness of fit was tested. Eighty nine plants from F₃ generation of ADT43 × IRBB60 were also screened for resistance genes. The genotypes carrying resistance genes in different combinations were identified. The pyramided lines showed a wider spectrum and higher level of resistance against two Xoo isolates under field conditions.     

Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106

Bacterial blight (BB) of rice caused by Xanthomonas oryzae pv. oryzae (Xoo) is a major disease of rice in several countries. Three BB resistance genes, xa5, xa13 and Xa21, were pyramided into cv. PR106, which is widely grown in Punjab, India, using marker-assisted selection. Lines of PR106 with pyramided genes were evaluated after inoculation with 17 isolates of the pathogen from the Punjab and six races of Xoo from the Philippines. Genes in combinations were found to provide high levels of resistance to the predominant Xoo isolates from the Punjab and six races from the Philippines. Lines of PR106 with two and three BB resistance genes were also evaluated under natural conditions at 31 sites in commercial fields. The combination of genes provided a wider spectrum of resistance to the pathogen population prevalent in the region; Xa21 was the most effective, followed by xa5. Resistance gene xa13 was the least effective against Xoo. Only 1 of the BB isolates, PX04, was virulent on the line carrying Xa21 but avirulent on the lines having xa5 and xa13 genes in combination with Xa21. Received: 26 May 2000 / Accepted: 16 August 2000