Water mass and bathymetric characteristics of polar cod habitat along the continental shelf and slope of the Beaufort and Chukchi seas

Relatively little is known about the distribution of fish in deep water (>200 m) in the Beaufort Sea. Data collected by an Acoustic Doppler Current Profiler operated in the Chukchi and Beaufort seas in summer were examined for evidence of fish biomass detections between 18 and 400 m. The presence of fish in waters between 1 and 30 m was explored opportunistically with a non-scientific echo sounder. Evaluation of findings was enhanced by measurements of water column properties (temperature, salinity, fluorescence and transmissivity). Relatively small shoals of fish were detected on the Chukchi shelf and eastern Chukchi shelf break, and also on the Alaskan and Canadian Beaufort shelves in the upper 20 m (T = 2–5°C). Much larger shoals (putative polar cod) were detected within Atlantic Water along the Beaufort continental slope (250–350 m) and near the bottom of Barrow and Mackenzie canyons, where temperatures were above 0°C. A warm-water plume of Alaska Coastal Current water with high concentrations of phytoplankton, zooplankton, and fish was found extending along the shelf 300 km eastward of Barrow Canyon. In contrast to the warm surface and Atlantic Water layers, very few fish were found in colder, intermediate depth Pacific-origin water between them. The large biomass of fish in the Atlantic Water along the continental slope of the Chukchi and Beaufort seas represents previously undescribed polar cod habitat. It has important implications with regard to considerations of resource development in this area as well as understanding impacts of climate change.     

Spatial analysis of egg distribution and geographic changes in the spawning habitat of the Brazilian sardine Sardinella brasiliensis

This paper establishes the spawning habitat of the Brazilian sardine Sardinella brasiliensis and investigates the spatial variability of egg density and its relation with oceanographic conditions in the shelf of the south‐east Brazil Bight (SBB). The spawning habitats of S. brasiliensis have been defined in terms of spatial models of egg density, temperature–salinity plots, quotient (Q) analysis and remote sensing data. Quotient curves (Q_C) were constructed using the geographic distribution of egg density, temperature and salinity from samples collected during nine survey cruises between 1976 and 1993. The interannual sea surface temperature (SST) variability was determined using principal component analysis on the SST anomalies (SSTA) estimated from remote sensing data over the period between 1985 and 2007. The spatial pattern of egg occurrences in the SBB indicated that the largest concentration occurred between Paranaguá and São Sebastião. Spawning habitat expanded and contracted during the years, fluctuating around Paranaguá. In January 1978 and January 1993, eggs were found nearly everywhere along the inner shelf of the SBB, while in January 1988 and 1991 spawning had contracted to their southernmost position. The SSTA maps for the spawning periods showed that in the case of habitat expansion (1993 only) anomalies over the SBB were zero or slightly negative, whereas for the contraction period anomalies were all positive. Sardinella brasiliensis is capable of exploring suitable spawning sites provided by the entrainment of the colder and less‐saline South Atlantic Central Water onto the shelf by means of both coastal wind‐driven (to the north‐east of the SBB) and meander‐induced (to the south‐west of the SBB) upwelling.     

Effect of temperature and salinity on the gastric evacuation of juvenile sole Solea solea and Solea senegalensis

The juveniles of Senegal sole, Solea senegalensis, Kaup 1858, and common sole, Solea solea (Linnaeus 1758) concentrate in estuarine and coastal nurseries of widely differing temperatures and salinities. Yet, little is known about the effect of these physiologically important variables on the gastric evacuation rates of these species. Gastric evacuation experiments were performed on juveniles of S. senegalensis and S. solea. Three temperatures were tested, 26, 20 and 14°C at a salinity of 35‰. A low salinity experiment was also carried out at 15‰, at 26°C. Experimental conditions intended to reflect conditions in estuarine and coastal nurseries where juveniles of these species spend their first years of life. The relation between stomach contents and time was best described by exponential regression models for both species. An analysis of covariance (ancova ) was performed in order to test differences in evacuation rate due to temperature and salinity (slope of evacuation time against stomach contents) for each species. While increasing temperature increased evacuation rates in both species (although not at 26°C in S. solea), the effect of low salinity differed among species, leading to a decrease in gastric evacuation rate in that of S. senegalensis and an increase in S. solea. Differences in gastric evacuation rate between species were related to its metabolic optimums and to its distribution in the nursery area where fish were captured. Implications for the habitat use of estuarine and coastal nurseries are discussed.     

Home on the range: spatial ecology of loggerhead turtles in Atlantic waters of the USA

Aim Although satellite tracking has yielded much information regarding the migrations and habitat use of threatened marine species, relatively little has been published about the environmental niche for loggerhead sea turtles Caretta caretta in north‐west Atlantic waters. Location North Carolina, South Carolina and Georgia, USA. Methods We tracked 68 adult female turtles between 1998 and 2008, one of the largest sample sizes to date, for 372.2 ± 210.4 days (mean ± SD). Results We identified two strategies: (1) ‘seasonal’ migrations between summer and winter coastal areas (n = 47), although some turtles made oceanic excursions (n = 4) and (2) occupation of more southerly ‘year‐round’ ranges (n = 18). Seasonal turtles occupied summer home ranges of 645.1 km² (median, n = 42; using α‐hulls) predominantly north of 35 ° latitude and winter home ranges of 339.0 km² (n = 24) in a relatively small area on the narrow shelf off North Carolina. We tracked some of these turtles through successive summer (n = 8) and winter (n = 3) seasons, showing inter‐annual home range repeatability to within 14.5 km of summer areas and 10.3 km of winter areas. For year‐round turtles, home ranges were 1889.9 km². Turtles should be tracked for at least 80 days to reliably estimate the home range size in seasonal habitats. The equivalent minimum duration for ‘year‐round’ turtles is more complex to derive. We define an environmental envelope of the distribution of North American loggerhead turtles: warm waters (between 18.2 and 29.2 °C) on the coastal shelf (in depths of 3.0–89.0 m). Main conclusions Our findings show that adult female loggerhead turtles show predictable, repeatable home range behaviour and do not generally leave waters of the USA, nor the continental shelf (< 200m depth). These data offer insights for future marine management, particularly if they were combined with those from the other management units in the USA.     

Ecology of coliphages in southern California coastal waters

Aims: This study aims to investigate the ecology of coliphages, an important microbial pollution indicator. Specifically, our experiments address (i) the ability of environmental Escherichia coli (E. coli) to serve as hosts for coliphage replication, and (ii) the temporal and spatial distribution of coliphages in coastal waters. Methods and Results: Water samples from three locations in California’s Newport Bay watershed were tested for the presence of coliphages every 2 weeks for an entire year. A total of nine E. coli strains isolated from various sources served as hosts for coliphage detection. Coliphage occurrence was significantly different between freshwater, estuarine and coastal locations and correlated with water temperature, salinity and rainfall in the watershed. The coliphages isolated on the environmental hosts had a broad host‐range relative to the coliphages isolated on an E. coli strain from sewage and a US EPA recommended strain for coliphage detection. Conclusions: Coliphage occurrence was related to the temperature, rainfall and salinity within the bay. The adaptation to a broad host‐range may enable the proliferation of coliphages in the aquatic environment. Significance and Impact of the Study: Understanding the seasonal variation of phages is useful for establishing a background level of coliphage presence in coastal waters. The broad host‐range of coliphages isolated on the environmental E. coli host calls for investigation of coliphage replication in the aquatic environment.     

Distribution and salinity tolerance of marine mysids from a subtropical estuary,Brazil

We studied the spatial and temporal distribution pattern of three marine mysids (Chlamydopleon dissimile, Metamysidopsis elongata atlantica and Mysidopsis coelhoi) from the Cananeia-Iguape Coastal System, southeast Brazil, in relation to environmental variables and zooplankton abundance. We also analysed mysid reproductive traits, and tested their tolerance to salinity gradients in laboratory experiments. Salinity was identified as a major factor influencing mysid spatial and temporal distribution, selectively limiting their distribution within the estuary. Chlamydopleon dissimile and M. coelhoi were common, but occurred at low abundances throughout the year, whereas the numerically dominant M. elongata atlantica had abundance peaks in spring, when thermohaline conditions were more favourable. Mysid brood size varied interspecifically; the occurrence of juveniles throughout the year indicated that mysids breed continuously in the region. The high biomass of M. elongata atlantica observed in spring confirms the importance of mysids in coastal regions' food webs.     

Temperature‐dependent competition between juvenile salmonids in small streams

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Temporal and Vertical Distributions of Bacterioplankton at the Gray's Reef National Marine Sanctuary

Large spatial scales and long-term shifts of bacterial community composition (BCC) in the open ocean can often be reliably predicted based on the dynamics of physical-chemical variables. The power of abiotic factors in shaping BCC on shorter time scales in shallow estuarine mixing zones is less clear. We examined the diurnal variation in BCC at different water depths in the spring and fall of 2011 at a station in the Gray''s Reef National Marine Sanctuary (GRNMS). This site is located in the transition zone between the estuarine plume and continental shelf waters of the South Atlantic Bight. A total of 234,516 pyrotag sequences of bacterial 16S rRNA genes were recovered; they were taxonomically affiliated with >200 families of 23 bacterial phyla. Nonmetric multidimensional scaling analysis revealed significant differences in BCC between spring and fall samples, likely due to seasonality in the concentrations of dissolved organic carbon and nitrate plus nitrite. Within each diurnal sampling, BCC differed significantly by depth only in the spring and differed significantly between day and night only in the fall. The former variation largely tracked changes in light availability, while the latter was most correlated with concentrations of polyamines and chlorophyll a. Our results suggest that at the GRNMS, a coastal mixing zone, diurnal variation in BCC is attributable to the mixing of local and imported bacterioplankton rather than to bacterial growth in response to environmental changes. Our results also indicate that, like members of the Roseobacter clade, SAR11 bacteria may play an important role in processing dissolved organic material in coastal oceans.     

Defining the fundamental physiological niche of young estuarine fishes and itsrelationship to understanding distribution,vital metrics,and optimal nurseryconditions

Because estuarine nekton are integrators of the environment abiotic and biotic factors can influence or constrain the relative value of estuarine nursery zones. Recent laboratory experiments on young spot, Leiostomus xanthurus, indicate that both water temperature and salinity significantly affect somatic growth. These experimental data contrast with previous work on young Atlantic croaker,Micropogonias undulatus, white trout,Cynoscion arenarius, and mullet,Mugil sp. Together these results suggest that quantifying vital metrics of nekton, such as survival and growth, along realistic environmental gradients through critical laboratory experiments, allows a more accurate definition of constraints on habitat use. Our studies of factors influencing recruitment success in both winter- and spring/summer-spawning fishes illustrate seasonal as well as intrafamilial differences in growth. Effective management of coastal ecosystems must take into account both variability in abiotic conditions and the nested habitat component, both of which can be modified by coastal development, which could lead to reduced productivity and sustainability of these estuarine landscapes.     

Climate as a driver of population variability in breeding Gentoo Penguins Pygoscelis papua at the Falkland Islands

Detecting and predicting how populations respond to environmental variability are eminent challenges in conservation research and management. This is particularly true for wildlife populations at high latitudes, many of which demonstrate changes in population dynamics associated with global warming. The Falkland Islands (Southwest Atlantic) hold one of the largest Gentoo Penguin Pygoscelis papua populations in the world, representing c. 34% of the global population. The numbers of breeding Gentoo Penguins at the Falkland Islands have shown a high degree of inter‐annual variability since monitoring commenced in 1990. However, proximate causes of annual variability in breeding numbers have not been explored. Here we examine 21 years of Gentoo Penguin breeding surveys from the Falkland Islands and assess whether inter‐annual variability in the number of breeding pairs were correlated with proxies of environmental variability. There was a positive correlation between the number of breeding pairs and a broad‐scale climatic variation index, the Southern Oscillation Index (SOI). In turn, the SOI was significantly correlated with spring sea surface temperature anomalies, indicating a more immediate atmospherically forced response to El Niño Southern Oscillation variability in the Southwest Atlantic than previously reported. However, we also describe a non‐linear response to environmental variability that may highlight foraging plasticity and/or the complexity of regional ecosystem interactions that operate across a range of different scales.     

Essential waters: Young bull sharks in Fiji's largest riverine system

Coastal and estuarine systems provide critical shark habitats due to their relatively high productivity and shallow, protected waters. The young (neonates, young‐of‐the‐year, and juveniles) of many coastal shark species occupy a diverse range of habitats and areas where they experience environmental variability, including acute and seasonal shifts in local salinities and temperatures. Although the location and functioning of essential shark habitats has been a focus in recent shark research, there is a paucity of data from the South Pacific. In this study, we document the temporal and spatial distribution, age class composition, and environmental parameters of young bull sharks (Carcharhinus leucas) in the Rewa, Sigatoka, and Navua Rivers, Fiji's three largest riverine systems. One hundred and seventy‐two young bull sharks were captured in fisheries‐independent surveys from January 2016 to April 2018. The vast majority of the captures were neonates. Seasonality in patterns of occurrence of neonate individuals suggests a defined parturition period during summer. Environmental parameters between the Rewa and the Sigatoka River differed significantly, as did the recorded young bull sharks abundance. According to the surveys, young bull sharks occur in all three rivers with the Rewa River likely representing essential habitat for newly born bull sharks. These results enhance the understanding of bull shark ecology in Fiji and provide a scientific basis for the implementation of local conservation strategies that contribute to the protection of critical habitats.     

三峡三期蓄水后长江口海域浮游动物群落特征及影响因子

根据2010年8月、11月以及2011年5月3个航次、各次24个监测点的调查数据,分析了三峡工程三期蓄水后一个水文年内长江口浮游动物优势种、湿重生物量及丰度的变化,并用BIOENV筛选出影响浮游动物分布的关键环境因子。结果表明:长江口浮游动物春季绝对优势种为夜光虫(Noctiluca scientillans)与中华哲水蚤(Calanus sinicus),夏季绝对优势种为太平洋纺锤水蚤(Acartia pacifica steuer),秋季绝对优势种为针刺拟哲水蚤(Paracalanus aculeatus);浮游动物湿重生物量夏季(970.6 mg/m~3)秋季(613.8 mg/m~3)春季(571.5 mg/m~3),丰度夏季(783.5个/m~3)春季(691.3个/m~3)秋季(399.5个/m~3);影响浮游动物分布的关键环境因子为底层盐度、底层温度及底层硅酸盐。     

Evidence of biogeography in surface ocean bacterioplankton assemblages

Regardless of the importance of bacterial assemblages as essential components of ecosystems, little is known about how their populations are structured. We analyzed the composition and turnover rates, based on 16S rDNA sequences, of surface water oceanic bacterial assemblages of the fraction between 0.1 and 0.8 μm along a latitudinal gradient (45°6′42′′N in the North Atlantic to 15°8′37′′S in the South Pacific) including geographic distance, temperature, chlorophyll a and salinity. Here we show that oceanic bacterial assemblages between 0.1 and 0.8 μm, can be structured by a variety of environmental interactions that include separation by distance and chlorophyll a concentration in temperate North Atlantic coastal samples and temperature in tropical Atlantic and Pacific coastal and open ocean samples. Bacterial phyla composition diverged between temperate and tropical regions. This study suggests that some bacterial assemblages could be structured both by environmental and spatial factors, while others by environmental factors alone.     

Environmental influences on the spatio-temporal distribution of Coilia nasus in the Yangtze River estuary

The Yangtze River estuary (YRE) is an important migration channel and foraging habitat for Coilia nasus. Due to its ecological significance and a prioritization of this species’ protection, the need to investigate and analyze environmental relationships of the abundance of Coilia nasus in the YRE as well as develop an understanding of their temporal and spatial distributions is becoming exceedingly important. Using fishery data and environmental survey data from 2009 to 2016, three models including generalized additive mixed models (GAMM), generalized additive models with zero-inflated Poisson distribution (ZIP-GAM) and two-step GAM were used to analyze relationships between environmental factors and the distribution of Coilia nasus in the YRE. The results showed that model fitting of GAMM was more consistent with observations and revealed influences of water temperature, salinity, chlorophyll, and pH on distribution. GAMM demonstrated that higher Coilia nasus abundances were located in waters with water temperature values at 15°C and 30°C, and lower Coilia nasus abundances were located in areas with water temperature values at 10°C and 20°C. All models indicated that the effect of salinity on abundance of Coilia nasus present a multimodal pattern including three peaks at 5, 15, and 25 ppt respectively. Additionally, abundance of Coilia nasus increased with the increase of chlorophyll A in its range of 0–4 mg/L. In a range of 8.0–9.5, higher PH value was more suitable for the aggregation of Coilia nasus. Cross validation was used to evaluate the predictive performance of models and GAMM was found to be the best. The predicted abundance distribution of Coilia nasus in the summer and autumn of 2016 was relatively higher overall than that in winter and spring. The predicted zero abundance distribution pattern was consistent with the sampling presence distribution which was obtained using fishery independent survey data of the year 2009–2015. Facing the urgency protection of Coilia nasus in YRE, results of this study could be used for Coilia nasus conservation and reserve planning.     

Plasma metabolites and migration physiology of semipalmated sandpipers: refueling performance at five latitudes

Long-distance bird migration is fueled by energy gathered at stopover sites along the migration route. The refueling rate at stopover sites is a determinant of time spent at stopovers and impacts the overall speed of migration. Refueling rate during spring migration may influence the fitness of individuals via changes in the probability of successful migration and reproduction during the subsequent breeding season. We evaluated four plasma lipid metabolites (triglycerides, phospholipids, β-OH-butyrate, and glycerol) as measures of refueling rate in free-living semipalmated sandpipers (Calidris pusilla) captured at non-breeding areas. We described the spatial and temporal variation in metabolite concentrations among one winter site in the Dominican Republic and four stopover sites in the South Atlantic and Mid-Atlantic Coastal Plain regions of North America. Triglycerides and β-OH-butyrate clearly identified spatial variation in refueling rate and stopover habitat quality. Metabolite profiles indicated that birds had higher refueling rates at one site in the Mid-Atlantic Coastal Plain than at three sites on the South Atlantic Coastal Plain and one site in the Dominican Republic. Temporal variation in lipid metabolites during the migration season suggested that male semipalmated sandpipers gained more weight at stopovers on the South Atlantic Coastal Plain than did females, evidence of differential migration strategies for the sexes. Plasma lipid metabolites provide information on migration physiology that may help determine stopover habitat quality and reveal how migratory populations use stopover sites to refuel and successfully complete long-distance migrations.     

Dinoflagellate cysts as indicators of water quality and productivity in British Columbia estuarine environments

Palynological analyses of 60 surface sediment samples from estuarine environments near Vancouver Island, including the Georgia Strait (GS), the Effingham (EFF) and the Seymour–Belize (SB) Inlets were performed in order to document the distribution of dinoflagellate cyst assemblages and their relationship to hydrographic conditions, productivity and nutrient concentrations. We tested transfer functions using the analogue method, and suggest that dinoflagellate cyst assemblages can be used to reconstruct primary productivity, temperature and salinity. The EFF and SB Inlets are characterized by a dominance of autotrophic taxa, particularly Operculodinium centrocarpum, whereas the Protoperidinioid and gymnodinial heterotrophic taxa such as Quinquecuspis concreta and Brigantedinium spp. dominate the assemblages of the GS. Multivariate analysis shows that this distribution is closely linked to primary productivity, sea-surface temperature (SST) and spring silica concentration. The abundance of autotrophic taxa in the EFF and SB Inlets is associated with high primary productivity and low summer SST, indicating summer upwelling of coastal British Columbia, whereas the heterotrophic taxa that characterizes the GS assemblages are related to low productivity, high summer SST and high silica concentration during spring. Multivariate analysis shows that the most important environmental parameters related to dinocyst distribution in the restricted embayment of the GS, are distance to the shore, distance to Vancouver Harbor, spring sea surface salinity (SSS), spring phosphate concentration and spring productivity. The autotrophic taxa are generally more common in coastal and shallow waters, but Spiniferites ramosus and Pentapharsodinium dalei show an opposite correlation to spring productivity and salinity. P. dalei is particularly abundant around Vancouver Harbor, near highly urbanized shores and within the Fraser River plume, where salinity is low and spring productivity and continental runoff are high. S. ramosus shows its highest abundance on the western coast of GS. Protoperidinioid and gymnodinial cysts characterize distal zones within the central and southern GS that are associated with a mixture of brackish waters coming from the Fraser River and deep upwelling waters entering the GS via Juan de Fuca Strait. The relationship between dinoflagellate cyst assemblages and primary productivity in these estuarine systems differs from that in oceanic and outer neritic zones, where the abundance of heterotrophic taxa is commonly associated with upwelling and high productivity.     

Growth, maturation and photosynthesis of the brackish water alga Rhizoclonium sp. (Cladophoraceae, Chlorophyta) in relation to salinity

The effects of salinity on growth, maturation and photosynthesis were examined in the filamentous alga Rhizoclonium sp. (Cladophoraceae, Chlorophyta) growing in a brackish water habitat in a canal draining into Tokyo Bay, Japan. In this habitat Rhizoclonium sp. was exposed to a wide salinity range, both daily, 5–23‰ during November 1996, and hourly, 6–24‰ during the spring tide day. From the results of culture experiments, growth and maturation of Rhizoclonium sp. occurred in the wide salinity range of 10–40‰ at 20 μmol photons m‐²s‐¹ at 20°C, but did not occur at salinity of 0‰. Light saturation on the photosynthesis‐irradiance curve at 20°C at 20‰ was reached at 100 μmol photons m‐²s‐¹, which is characteristic for shade‐adapted algae. On the photosynthesis‐salinity curve at 20°C at saturated irradiance (160 μmol photons m‐²s‐¹), the net photosynthetic rate increased with increasing salinity up to 30‰ but decreased at 40‰. On the photosynthesis–salinity curve at 20°C at 20 μmol photons m‐²s‐¹ (at near in situ irradiance), the photosynthetic rates were almost the same in the salinity range from 0 to 40‰. Therefore, this species is able to grow, reproduce and photosynthesize with a relative efficiency in a wide salinity range, which shows that it is well adapted to a brackish water environment.