Hierarchical gene diversity and genetic structure of tribal populations of Andhra Pradesh,India

Gene diversity and genetic structure of tribal populations of Andhra Pradesh, India, have been analyzed under a hierarchical model consisting of five regions of the state, tribes within the regions, and local subpopulations within the tribes. Average gene diversity has been estimated from gene frequency data for 15 polymorphic loci by using nested gene diversity analysis of G_ST. The intralocation coefficient of gene diversity was estimated at 96% of the total, whereas the intertribal, within—and between—regional gene diversities were found to be only 1.90, 0.95, and 1.43%, respectively. The estimate of gene diversity was higher for loci with higher degrees of polymorphism such as ABO, MN, ESD, and PTC and lower for loci with low-level polymorphism and extreme gene frequencies such as Hb, Tf, PHI, 6PGD, and Hp. The nature of selective preference or neutrality at the loci seems to be important in this respect. Tribes of the plains exhibit the least gene diversity, apparently because of higher gene flow among them. The contribution of loci with intermediate gene frequencies in intertribal and regional gene diversity was found to be higher than for loci with extreme allelic frequencies. These results suggest that the most significant component of variation is between individuals within locations and that variation between local subpopulations is negligible in the genetic structure of a population. Forces like selection, gene flow and drift also influence the diversity depending upon the nature of the locus. © 1993 Wiley-Liss, Inc.     

Red cell enzyme polymorphism in two populations of coastal Andhra Pradesh, South India

Four red cell enzyme polymorphisms: Esterase-D (ESD), Glyoxalase-I (GL01), Superoxide Dismutase (SOD) and Phosphoglucomutase (PGM1 and 2), have been studied in two endogamous populations (paidi and Valmiki) of North Coastal Andhra Pradesh, South India. Inter group comparison by chisquare analysis revealed no significant differences among them. An attempt was made to compare with those available for other populations from Andhra Pradesh.     

Distribution and Conservation of Slender Lorises (Loris tardigradus lydekkerianus) in Southern Andhra Pradesh,South India

Slender lorises live in forests of southern India and Sri Lanka. Little is known about their distribution patterns and relative densities. We report the results of a survey conducted in 6 forest divisions in the southern parts of the state of Andhra Pradesh, South India. Relatively high densities of lorises occurred in mixed deciduous forests and in adjoining farm lands interspersed with trees. Three distinct populations inhabit the study area. We recommend conservation measures for Loris tardigradus.     

Biological and Molecular Characterization of Three Isolates of Tomato aspermy virus Infecting Chrysanthemums in India

Severe mosaic, chlorotic ringspots and flower deformation were observed during the winter of November 2006–February 2007 on chrysanthemums ( Chrysanthemum morifolium ) at three locations in India: Lucknow (UP), Dhanbad (MP) and Kolkata (WB). Tomato aspermy virus (TAV) was detected in affected plants by ELISA and by RT-PCR using TAV specific primers. These TAV isolates were mechanically transmitted to test plant species and also by aphids ( Aphis gossypii ) to Lycopersicon esculentum . The complete RNA 3 of each TAV isolate was cloned and sequenced and determined to be 2386 nucleotides (nt) long, and to encode two open reading frames (ORFs): the movement protein (MP) of 741 nt and the coat protein (CP) of 657 nt translating in to 246 and 218 amino acid (aa), respectively. When RNA 3 sequences of the Indian isolates were multiple aligned with seven other strains of TAV occurring worldwide, Indian isolates shared 98–99% identities among themselves and with the KC, V, P, B, I and C strains of TAV. In phylogenetic analysis, the Lucknow and Kolkata isolates of TAV clustered together and showed a close relationship with the KC-TAV strain from South Korea, whereas the Dhanbad isolate formed an independent cluster and showed closeness with the V-TAV strains from Spain and Australia. Recombination events were also observed in the CP region of the Dhanbad isolate, supporting its diverse behaviour. This is the first report of the complete RNA 3 sequence of these three Indian TAV isolates.     

Family resemblance for cranio-facial measurements in Velanti Brahmins from Andhra Pradesh, India

Maximum likelihood estimates of familial correlations are presented for 12 cranio-facial measurements taken on 399 nuclear families from Southern India. Marital resemblance is significantly different from zero for head circumference, head breadth, minimum frontal breadth, bizygomatic breadth, total facial height, and nasal height, but not for bigonial breadth, nose breadth, nose depth, or ear dimensions. All other familial correlations are significantly greater than zero except for the father-daughter correlation for nasal depth. Path analysis with a TAU transmission model with sex effects reveals that family resemblance for head circumference, head length, bigonial breadth, total facial height, and nasal height, but not for bigonial breadth, nose breadth, nose depth, or ear dimensions. All other familial correlations are significantly greater than zero except for the father-daughter correlation for nasal depth. Path analysis with a TAU transmission model with sex effects breadth, and sex effects in transmission were found for head breadth and nose dimensions. Sex effects in this sample may be due to the fact that different anthropometrists were used for male and female subjects.     

Demographic Structure and its implications among two breeding isolates of Mali Tribe from Andra Pradesh,India

In the present work, DNA was extrated from 63 skeletal samples recovered at the Neolithic site of San Juan ante Portam Latinam (SJAPL) (Araba, Basque Country). These samples have proved useful as genetic material for the performance of population studies. To achieve this it was necessary to overcome the methodological problems arising when working with damaged DNA molecules. We succeeded in performing an amplification and restriction analysis of the polymorphisms present in the mtDNA. Ninety seven percent of the samples were classified as belonging to one of the nine mtDNA haplogroups described in Caucasians. This work shows that restriction analysis is a useful methodological tool to perform reliable population genetic analysis on archaeological remains. Tha analysis of ancient and modern haplogroup distribution can shed more light on the genetic evolution of human populations. Moreover, a more exhaustive data on prehistoric populations will allow to build stronger hypothesis on the genetic relationships among human populations.     

HLA antigen frequency in the Koya tribe of Andhra Pradesh, India

The frequencies of HLA-A, -B, and -C antigens were studied in a tribal population of Koya from Andhra Pradesh in southern India. No other well-defined tribal population has been studied with which the present results may be compared. However, the HLA profile of Koya showed distinct differences from the general HLA distribution in India in the frequency of a large number of antigens both at the A and B loci. This study indicates the distinctiveness of this tribal population and suggests the potential importance of the study of HLA frequencies in tribal groups of India.     

Anthropometric variation among the reddis of Southern Andhra Pradesh,India

Five select Reddi populations based on 750 males in the age range of 20 to 50 years have been studied for 15 anthropometric measurements and 10 indices. The Pokanati show higher mean value for a majority of the measurements. F-values are significant for all measurements except for bicristal breadth. All indices but nasal index show negligible variation. Mesocephalic heads predominate among Pokanati and dolicocephalic heads among the rest. the cluster analysis and principal coordinate analysis, as diagrammatically represented, show the extent of variation among the five Reddi populations.     

The complete sequence of a sugarcane mosaic virus isolate causing maize dwarf mosaic disease in China

The complete sequence of a potyvirus from maize in Zhejiang Province was determined. The RNA was 9596 nucleotides long, excluding the 3′-poly (A) tail, and there was a single long open reading frame (ORF) of 9192 nts encoding a 346.1 ku polyprotein. The polyprotein had substantial amino acid sequence homology with those encoded by the RNAs of a Chinese isolate of sorghum mosaic virus (SrMV-C) and a Bulgarian isolate of maize dwarf mosaic virus, but it was most closely related to sugarcane mosaic virus (SCMV) isolates, for which only partial sequences have been published. According to the published criteria for distinguishing potyviruses, the sequence reported here is clearly a strain of SCMV, but it also showed a surprisingly high amino acid homology with SrMV-C in the HC-Pro, P3 and Cl proteins.     

Evaluation of some heavy metals toxicity in Channa punctatus and riverine water of Kosi in Rampur,Uttar Pradesh,India

This study was aimed to assess the bioaccumulation and concentration level of three heavy metals such as Chromium (Cr), Cadmium (Cd) and Lead (Pb) in the riverine water and edible fish, Channa punctatus obtained from River Kosi, Rampur, Uttar Pradesh, India. These toxic heavy metals are released into the environment because of E-waste, industrial activities, municipal urban runoff, coal burning, fertilizers etc., then paved the way into the aquatic system due to direct input, atmospheric deposition, and erosions caused by rain. There is every apprehension of aquatic animals getting exposed to elevated levels of heavy metals, thus possessing harmful effects both to flora and fauna. The concentrations of Cd, Cr and Pb in water were found to be 0.051 ± 0.026, 1.091 ± 0.408, and 0.019 ± 0.002 whereas in the kidneys of Channa punctatus, as 0.076 ± 0.208, 0.482 ± 0.059, and 0.127 ± 0.705 respectively.     

The complete sequence of a sugarcane mosaic virus isolate causing maize dwarf mosaic disease in China

The complete sequence of a potyvirus from maize in Zhejiang Province was determined. The RNA was 9596 nucleotides long, excluding the 3'-poly (A) tail, and there was a single long open reading frame (ORF) of 9192 nts encoding a 346.1 ku polyprotein. The polyprotein had substantial amino acid sequence homology with those encoded by the RNAs of a Chinese isolate of sorghum mosaic virus (SrMV-C) and a Bulgarian isolate of maize dwarf mosaic virus, but it was most closely related to sugarcane mosaic virus (SCMV) isolates, for which only partial sequences have been published. According to the published criteria for distinguishing potyviruses, the sequence reported here is clearly a strain of SCMV, but it also showed a surprisingly high amino acid homology with SrMV-C in the HC-Pro, P3 and Cl proteins.     

芜菁花叶病毒分子生物学研究进展

芜菁花叶病毒(Turnip mosaic virus,TuMV)是马铃薯Y病毒属(Potyvirus)的一个重要成员, 在世界上分布广泛,主要危害十字花科植物。本文对芜菁花叶病毒的分子生物学相关研究,如基因组结构和功能、株系变异与进化、寄主植物抗性以及抗病毒转基因工程等的研究进展作一阐述。     

Molecular Characterization and Distribution of Cucumber green mottle mosaic virus in China

Cucumber green mottle mosaic virus (CGMMV) is an emerging virus on watermelon in China. We report here the almost complete nucleotide sequence and the characterization of the genome of a Chinese isolate (CGMMV-LN). Nucleotide sequence comparisons showed CGMMV-LN is closely related to CGMMV-KOM, with 99.4% identity. On the basis of the nucleotide sequence, a digoxigenin-labelled cDNA probe CG, complementary to the replicase gene region of CGMMV was synthesized. The specificity and sensitivity of the probe was tested. The detection limit of the method was equivalent to 0.8 μg fresh tissues infected by CGMMV. Two hundreds and eighteen watermelon samples collected from different regions in China during 2006–2007 were tested by this method. The distribution pattern of CGMMV in China during these years was revealed. The virus has spread in five provinces of China so far, including Liaoning, Hebei, Guangdong, Hubei and Shandong and might be an increasing tendency, which provides important information for CGMMV control in China.     

Climate sensitivity of crop yields in the former state of Andhra Pradesh,India

Observed meteorological data demonstrates that temperature has increased by 0.74 °C in the last hundred years with the bulk of the warming occurring in the last 50 years. This paper examines the impact of climate change on five major crops in the former state of Andhra Pradesh using district level panel data for the period 1981–2010. Analysis of data shows that crop yields are significantly impacted by climate for rice, tobacco and groundnut. Crops grown in rabi are more susceptible to changes in climate than those in kharif, while drought crops like jowar are found to withstand changes in climate better than others.     

Genetic studies among Kanet and Koli of Kinnar district in Himachal Pradesh,India

Data are presented on serological and electrophoretic variants of 18 systems of red cells in 228 individuals belonging to a scheduled tribe (Kanet) and a scheduled caste (Koli) of Kinnar district in Himachal Pradesh, India. Differences in gene frequencies clearly indicate biological distinction in the local population. The possible cause of this genetic heterogeneity is discussed.     

大豆花叶病毒研究进展

大豆花叶病毒（Soybean mosaic virus,SMV）病是在世界范围内广泛分布并普遍发生的病毒病害之一,导致大豆严重减产和种质衰退。这引起了国内外许多学者的科研兴趣,研究内容涉及SMV株系划分与发生分布、传播流行方式、寄主上的症状和影响因素、基因组结构组成及各基凶功能、植物生理生化抗性、大豆SMV抗性遗传育种等各方面。本文综述了近年来国内外SMV的科研方向和进展,旨在为进一步的研究提供依据。