Bird Richness and Abundance in Response to Urban Form in a Latin American City: Valdivia,Chile as a Case Study

There is mounting evidence that urban areas influence biodiversity. Generalizations however require that multiple urban areas on multiple continents be examined. Here we evaluated the role of urban areas on avian diversity for a South American city, allowing us to examine the effects of urban features common worldwide, using the city of Valdivia, Chile as case study. We assessed the number of birds and their relative abundance in 152 grid cells of equal size (250 m²) distributed across the city. We estimated nine independent variables: land cover diversity (DC), building density (BD), impervious surface (IS),municipal green space (MG),non-municipal green space (NG), domestic garden space (DG), distance to the periphery (DP), social welfare index (SW), and vegetation diversity (RV). Impervious surface represent 41.8% of the study area, while municipal green, non-municipal green and domestic garden represent 11.6%, 23.6% and 16% of the non- man made surface. Exotic vegetation species represent 74.6% of the total species identified across the city. We found 32 bird species, all native with the exception of House Sparrow and Rock Pigeon. The most common species were House Sparrow and Chilean Swallow. Total bird richness responds negatively to IS and MG, while native bird richness responds positively to NG and negatively to BD, IS DG and, RV. Total abundance increase in areas with higher values of DC and BD, and decrease in areas of higher values of IS, SW and VR. Native bird abundance responds positively to NG and negatively to BD, IS MG, DG and RV. Our results suggest that not all the general patterns described in previous studies, conducted mainly in the USA, Europe, and Australia, can be applied to Latin American cities, having important implications for urban planning. Conservation efforts should focus on non-municipal areas, which harbor higher bird diversity, while municipal green areas need to be improved to include elements that can enhance habitat quality for birds and other species. These findings are relevant for urban planning in where both types of green space need to be considered, especially non-municipal green areas, which includes wetlands, today critically threatened by urban development.     

Black Hunger: Soul Food and America

Black Hunger: Soul Food and America . Doris Witt. Minneapolis: University of Minnesota Press, 2004. 292 pp.     

The Dynamic Nature of Protistan Ingestion Response to Prey Abundance

ABSTRACT. Ingestion rate of Paraphysomonas imperforata was found to be a hyperbolic function of prey density. But the same flagellate clone had multiple ingestion responses to prey density, depending on its physiological state and physical stress it suffers. The flagellates in a physiological state of higher growth tended to have higher maximum ingestion and clearance rates than ones in a physiological state of lower growth. The same trend was observed for volume-specific maximum ingestion and volume-specific clearance rate. In response to changing prey density, the growth rate did not change as quickly as the ingestion rate, suggesting imbalance between the two. The tested physical stresses, including shaking, centrifugation, and filtration, also resulted in reduction of ingestion parameters of the flagellates. But half-saturation constants did not show any trend in response to either physiological state or physical stress. In light of the dynamic nature of protistan ingestion response to prey abundance, short incubation, which minimizes the physiological change, and careful handling, which prevents the possible physical stress, should be employed in order to avoid underestimation of in situ ingestion rates. Previously reported ingestion parameters of lab-cultured protists, which are thought to be unrealistic in natural conditions, may represent only one of multiple ingestion responses, probably prey-rich condition.     

Variation in Population Synchrony in a Multi-Species Seabird Community: Response to Changes in Predator Abundance

Ecologically similar sympatric species, subject to typical environmental conditions, may be expected to exhibit synchronous temporal fluctuations in demographic parameters, while populations of dissimilar species might be expected to show less synchrony. Previous studies have tested for synchrony in different populations of single species, and those including data from more than one species have compared fluctuations in only one demographic parameter. We tested for synchrony in inter-annual changes in breeding population abundance and productivity among four tern species on Coquet Island, northeast England. We also examined how manipulation of one independent environmental variable (predator abundance) influenced temporal changes in ecologically similar and dissimilar tern species. Changes in breeding abundance and productivity of ecologically similar species (Arctic Sterna paradisaea, Common S. hirundo and Roseate Terns S. dougallii) were synchronous with one another over time, but not with a species with different foraging and breeding behaviour (Sandwich Terns Thalasseus sandvicensis). With respect to changes in predator abundance, there was no clear pattern. Roseate Tern abundance was negatively correlated with that of large gulls breeding on the island from 1975 to 2013, while Common Tern abundance was positively correlated with number of large gulls, and no significant correlations were found between large gull and Arctic and Sandwich Tern populations. Large gull abundance was negatively correlated with productivity of Arctic and Common Terns two years later, possibly due to predation risk after fledging, while no correlation with Roseate Tern productivity was found. The varying effect of predator abundance is most likely due to specific differences in the behaviour and ecology of even these closely-related species. Examining synchrony in multi-species assemblages improves our understanding of how whole communities react to long-term changes in the environment and suggests that changes in predator abundance may differentially affect populations of sympatric seabird species.     

Detection of Temporal Changes in Insect Body Reflectance in Response to Killing Agents

Computer vision and reflectance-based analyses are becoming increasingly important methods to quantify and characterize phenotypic responses by whole organisms to environmental factors. Here, we present the first study of how a non-destructive and completely non-invasive method, body reflectance profiling, can be used to detect and time stress responses in adult beetles. Based on high-resolution hyperspectral imaging, we acquired time series of average reflectance profiles (70 spectral bands from 434-876 nm) from adults in two beetle species, maize weevils (Sitophilus zeamais) and larger black flour beetles (Cynaus angustus). For each species, we acquired reflectance data from untreated controls and from individuals exposed continuously to killing agents (an insecticidal plant extract applied to maize kernels or entomopathogenic nematodes applied to soil applied at levels leading to ≈100% mortality). In maize weevils (exposed to hexanic plant extract), there was no significant effect of the on reflectance profiles acquired from adult beetles after 0 and 12 hours of exposure, but a significant treatment response in spectral bands from 434 to 550 nm was detected after 36 to 144 hours of exposure. In larger black flour beetles, there was no significant effect of exposure to entomopathogenic nematodes after 0 to 26 hours of exposure, but a significant response in spectral bands from 434-480 nm was detected after 45 and 69 hours of exposure. Spectral bands were used to develop reflectance-based classification models for each species, and independent validation of classification algorithms showed sensitivity (ability to positively detect terminal stress in beetles) and specificity (ability to positively detect healthy beetles) of about 90%. Significant changes in body reflectance occurred at exposure times, which coincided with published exposure times and known physiological responses to each killing agent. The results from this study underscore the potential of hyperspectral imaging as an approach to non-destructively and non-invasively quantify stress detection in insects and other animals.     

A Century of Change in Macrophyte Abundance and Composition in Response to Agricultural Eutrophication

Clear Lake, Iowa, USA is a shallow, agriculturally eutrophic lake that has changed drastically over the past century. Eight macrophyte surveys since 1896 were pooled and examined to characterize long-term impacts of eutrophication on macrophyte community composition and relative abundance. Surveys in 1981 and 2000 revealed few submergent and floating-leaved species and a dominance in emergent species (Scirpus, Typha). Over the past century, however, species richness has declined from a high of 30 species in 1951 to 12 found today, while the community composition has shifted from submergent-(99%) to emergent-dominated floras (84%). Potamogeton praelongus was the first emergent species to disappear but was followed by several other clear water Potamogeton species. Several floating leaved and emergent genera increased in relative abundance with eutrophication, notably Nuphar, Nymphaea, Phragmites, Polygonum, Sagittaria, Scirpus, and Typha. P. pectinatus was present over the entire century due to its tolerance of eutrophic conditions. Macrophyte growth was generally light-limited, with 93% of the variance in relative abundance of submergent species explained by changes in water transparency. Clear Lake exhibits signs of alternative stable states, oscillating between clear and turbid water, coupled with high and low submerged species relative abundance. The maximum macrophyte richness occurred as the lake oscillated between submergent- and emergent-dominated states. Changes in the water level have also impacted macrophyte growth since the area of the lake occupied by emergent macrophytes was negatively correlated with water level. Strongest correlations indicated that macrophytes respond to water level variations with a 2-year time-lag.     

Metabolic Regulation of Brain Response to Food Cues

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Opportunistic Visitors: Long-Term Behavioural Response of Bull Sharks to Food Provisioning in Fiji

Shark-based tourism that uses bait to reliably attract certain species to specific sites so that divers can view them is a growing industry globally, but remains a controversial issue. We evaluate multi-year (2004–2011) underwater visual (n = 48 individuals) and acoustic tracking data (n = 82 transmitters; array of up to 16 receivers) of bull sharks Carcharhinus leucas from a long-term shark feeding site at the Shark Reef Marine Reserve and reefs along the Beqa Channel on the southern coast of Viti Levu, Fiji. Individual C. leucas showed varying degrees of site fidelity. Determined from acoustic tagging, the majority of C. leucas had site fidelity indexes >0.5 for the marine reserve (including the feeding site) and neighbouring reefs. However, during the time of the day (09:00–12:00) when feeding takes place, sharks mainly had site fidelity indexes <0.5 for the feeding site, regardless of feeding or non-feeding days. Site fidelity indexes determined by direct diver observation of sharks at the feeding site were lower compared to such values determined by acoustic tagging. The overall pattern for C. leucas is that, if present in the area, they are attracted to the feeding site regardless of whether feeding or non-feeding days, but they remain for longer periods of time (consecutive hours) on feeding days. The overall diel patterns in movement are for C. leucas to use the area around the feeding site in the morning before spreading out over Shark Reef throughout the day and dispersing over the entire array at night. Both focal observation and acoustic monitoring show that C. leucas intermittently leave the area for a few consecutive days throughout the year, and for longer time periods (weeks to months) at the end of the calendar year before returning to the feeding site.     

River Food Web Response to Large-Scale Riparian Zone Manipulations

Conservation programs often focus on select species, leading to management plans based on the autecology of the focal species, but multiple ecosystem components can be affected both by the environmental factors impacting, and the management targeting, focal species. These broader effects can have indirect impacts on target species through the web of interactions within ecosystems. For example, human activity can strongly alter riparian vegetation, potentially impacting both economically-important salmonids and their associated river food web. In an Olympic Peninsula river, Washington state, USA, replicated large-scale riparian vegetation manipulations implemented with the long-term (>40 yr) goal of improving salmon habitat did not affect water temperature, nutrient limitation or habitat characteristics, but reduced canopy cover, causing reduced energy input via leaf litter, increased incident solar radiation (UV and PAR) and increased algal production compared to controls. In response, benthic algae, most insect taxa, and juvenile salmonids increased in manipulated areas. Stable isotope analysis revealed a predominant contribution of algal-derived energy to salmonid diets in manipulated reaches. The experiment demonstrates that riparian management targeting salmonids strongly affects river food webs via changes in the energy base, illustrates how species-based management strategies can have unanticipated indirect effects on the target species via the associated food web, and supports ecosystem-based management approaches for restoring depleted salmonid stocks.     

Food Quality in Lusaka National Park: Tracking Mortality in Black Lechwe Antelopes

Translocation is one of the fundamental tools in wildlife management but only if appropriately undertaken. In 2009, 30 black lechwe antelopes were suddenly translocated from the State House Habitat (STH) into the newly established Lusaka National Park (LNP). However, within 4 months of being translocated to LNP, 28 black lechwes (93%) died. A pathological report produced by veterinarians following a postmortem examination suggested no disease incidence affected the antelopes. The food quality of LNP was tested and compared to that in the STH and the antelopes’ native habitat of the Bangweulu wetlands (BGW) to establish if variations in food quality were responsible for the antelopes’ mortality. The findings suggest that the food quality in LNP was greatly inferior to that in STH, which could explain the observed high mortality of the antelopes in LNP. Further, the quality of food in LNP did not widely differ from that in the BGW, suggesting that the antelopes might not have survived had they been translocated to their native habitat, as they had already adapted to feeding on highly nutritious supplementary feed at the STH.     

Quantifying Primate Food Distribution and Abundance for Socioecological Studies: An Objective Consumer-centered Method

Food abundance and distribution have played a central role in the conceptual theory of primate socioecology. This theory predicts that agonistic (contest) competition should occur when food is distributed in discrete, defensible patches; in contrast, when food sources are distributed uniformly or randomly, nonagonistic (scramble) competition is expected. Primatologists usually measure resource density and patchiness from a botanical perspective, without an explicit link to the biology of the animal being studied. Such an approach may be irrelevant to how the animals view the dispersion of resources. For studies related to feeding competition, we suggest the use of a method that provides a consumer-based index of food distribution. We then describe such an approach and apply it to understand agonistic behavior in white-faced capuchins (Cebus capucinus), at Lomas Barbudal. Instead of choosing sample plots at random, we use each actual feeding tree of a group as the center of a sample plot and we use the monkey species’ average group spread as the sampling area. This focal tree method allows us to evaluate the resource availability both within and outside of the feeding tree during a particular feeding bout. To summarize the spatial distribution of food at the level of a foraging group, we define and use an extension of Lloyd’s Dispersion Index, Lloyd’s Extended Index (LEI), designed to allow the inclusion of resources of diverse sizes and species in a single measure. We evaluate if LEI can be used to predict the frequency of aggression, if changing the area of the plot alters these results, and if calculating LEI based on fruit abundance or fruit biomass better predicts the frequency of aggression in this population of capuchins. In support of socioecological predictions, our results show that the frequency of agonism in a focal tree declines as LEI increases. This relationship is significant when LEI is calculated using a 20-m plot size and weighting tree size by fruit counts, but not when using larger plot sizes, unweighted tree counts, or weighting by fruit biomass. Our approach demonstrates the importance of carefully considering plot size and different measures of food availability when testing socioecological models relating resource distribution and quality to aggression in nonhuman primates.     

Reply to My Critics: A Response to Reviews of Darwin's Black Box: The Biochemical Challenge to Evolution

In Darwin's Black Box: The BiochemicalChallenge to Evolution I argued thatpurposeful intelligent design, rather thanDarwinian natural selection, better explainssome aspects of the complexity that modernscience has discovered at the molecularfoundation of life. In the five years since itspublication the book has been widely discussedand has received considerable criticism. Here Irespond to what I deem to be the mostfundamental objections. In the first part ofthe article I address empirical criticismsbased on experimental studies alleging eitherthat biochemical systems I discussed are notirreducibly complex or that similar systemshave been demonstrated to be able to evolve byDarwinian processes. In the remainder of thearticle I address methodological concerns,including whether a claim of intelligent designis falsifiable and whether intelligent designis a permissible scientific conclusion.     

Response to Predation Risk in Urban and Rural House Sparrows

Habitat urbanization may change the density of predators, and it is often assumed that such changes lead to altered predation risk for urban populations of their prey. Although it is difficult to study predation hazard directly, behavior responses of prey species may be informative in inferring such habitat differences. In this study, we compared the risk‐taking behavior of urban and rural house sparrows (Passer domesticus) after simulated attacks by two of their important predators (sparrowhawk Accipiter nisus and domestic cat Felis catus). The birds were startled by moving dummies of these predators and respective control objects, and their risk taking was estimated as their latency to feed after the startle. We found that sparrows responded more strongly (had longer post‐startle feeding latencies) to sparrowhawk attacks than to the control object, and their responses differed between the habitats. First, risk taking of urban birds strongly decreased with age (older birds had longer latencies than young birds), while there was no such age difference in rural birds. Second, young urban birds responded less strongly, while older urban birds responded more strongly to the sparrowhawk than the same age groups of rural birds, respectively. We did not succeed in evoking antipredatory response by simulated cat attacks, because birds responded similarly to the dummy and the control object. Our results support that predation risk, posed at least by avian predators, is different in urban and rural habitats of house sparrows. The increased wariness of older, hence presumably more experienced, urban birds implies that sparrows may be more exposed to predation in cities.     

Response of the Abundance of Key Soil Microbial Nitrogen-Cycling Genes to Multi-Factorial Global Changes

Multiple co-occurring environmental changes are affecting soil nitrogen cycling processes, which are mainly mediated by microbes. While it is likely that various nitrogen-cycling functional groups will respond differently to such environmental changes, very little is known about their relative responsiveness. Here we conducted four long-term experiments in a steppe ecosystem by removing plant functional groups, mowing, adding nitrogen, adding phosphorus, watering, warming, and manipulating some of their combinations. We quantified the abundance of seven nitrogen-cycling genes, including those for fixation (nifH), mineralization (chiA), nitrification (amoA of ammonia-oxidizing bacteria (AOB) or archaea (AOA)), and denitrification (nirS, nirK and nosZ). First, for each gene, we compared its sensitivities to different environmental changes and found that the abundances of various genes were sensitive to distinct and different factors. Overall, the abundances of nearly all genes were sensitive to nitrogen enrichment. In addition, the abundances of the chiA and nosZ genes were sensitive to plant functional group removal, the AOB-amoA gene abundance to phosphorus enrichment when nitrogen was added simultaneously, and the nirS and nirK gene abundances responded to watering. Second, for each single- or multi-factorial environmental change, we compared the sensitivities of the abundances of different genes and found that different environmental changes primarily affected different gene abundances. Overall, AOB-amoA gene abundance was most responsive, followed by the two denitrifying genes nosZ and nirS, while the other genes were less sensitive. These results provide, for the first time, systematic insights into how the abundance of each type of nitrogen-cycling gene and the equilibrium state of all these nitrogen-cycling gene abundances would shift under each single- or multi-factorial global change.     

Dietary Response of Chimpanzees and Cercopithecines to Seasonal Variation in Fruit Abundance. II. Macronutrients

In a continuation of our study of dietary differentiation among frugivorous primates with simple stomachs, we present the first comparison of differences in dietary macronutrient content between chimpanzees and cercopithecine monkeys. Previously we have shown that chimpanzee and monkey diets differ markedly in plant part and species content. We now examine whether this diet diversity is reflected in markedly different dietary macronutrient levels or the different feeding strategies yield the same macronutrient levels in their diets. For each primate group we calculated the total weighted mean dietary content of 4 macronutrients: crude lipid (lipid), crude protein (CP), water-soluble carbohydrates (WSC), and total nonstructural carbohydrates (TNC). We also calculated 4 fiber fractions: neutral-detergent fiber (NDF), which includes the subfractions hemicellulose (HC), cellulose (Cs), and sulfuric acid lignin (Ls). The HC and Cs are potentially fermentable fibers and would contribute to the energy provided by plant food, depending on the hind gut fermenting capacity of the individual primate species. The chimpanzee diet contained higher levels of WSC and TNC because during times of fruit abundance the chimpanzees took special advantage of ripe fruit, while the monkeys did not. The monkey diets contained higher levels of CP because the monkeys consumed a constant amount of leaf throughout the year. All four primate species consumed diets with similar NDF levels. However, the chimpanzees also took advantage of periods of ripe fruit abundance to decrease their Ls levels and to increase their HC levels. Conversely, the monkey diets maintained constant levels of the different fiber fractions thoughout the year. Nevertheless, despite these differences, the diets of the 4 frugivores were surprisingly similar, considering the substantial differences in body size. We conclude that the chimpanzee diet is of higher quality, particularly of lower fiber content, than expected on the basis of their body size.     

Dietary Response of Chimpanzees and Cercopithecines to Seasonal Variation in Fruit Abundance. I. Antifeedants

In order to understand dietary differentiation among frugivorous primates with simple stomachs, we present the first comparison of plant diets between chimpanzees and cercopithecine monkeys that controls for food abundance. Our aim was to test the hypothesis that monkeys have a more diverse diet as a result of their dietary tolerance for chemical antifeedants. Our study species are chimpanzees, blue monkeys, redtail monkeys, and gray-cheeked mangabeys living in overlapping ranges in Kibale National Park, Uganda. We indexed food abundance by the percentage of trees having ripe fruit within the range of each group; it varied widely during the year. Chimpanzees spent almost 3 times as much of their feeding time eating ripe fruits as the monkeys did and confined their diets almost exclusively to ripe fruits when they were abundant. Monkeys maintained a diverse diet at all times. When ripe fruit was scarce chimpanzee and monkey diets diverged. Chimpanzees relied on piths as their main fallback food, whereas monkeys turned to unripe fruits and seeds. For each primate group we calculated the total weighted mean intake of 5 antifeedants; condensed tannins (CT), total tannins assayed by radial diffusion (RD), monoterpenoids (MT), triterpenoids (TT), and neutral-detergent fiber (NDF). Monkeys had absolutely higher intakes of CT, RD, MT, and TT than those of chimpanzees, and their intake of NDF did not differ from that of chimpanzees, appearing relatively high given their lower body weights. However contrary to expectation, dietary divergence during fruit scarcity was not associated with any change in absolute or relative intake of antifeedants. For example, fruit scarcity did not affect the relative intake of antifeedants by cercopithecines compared to chimpanzees. Our results establish chimpanzees as ripe-fruit specialists, whereas cercopithecines are generalists with a higher intake of antifeedants. The low representation of ripe fruits in the diets of cercopithecines has not been explained. An important next step is to test the hypothesis that the difference between Kibale chimpanzees and cercopithecines represents a more general difference between apes and monkeys.     

Women at the Crossroads: A Prostitute Community's Response to AIDS in Urban Senegal

Women at the Crossroads:. Prostitute Community's Response to AIDS in Urban Senegal. Michelle Lewis Renaud. Amsterdam: Gordon and Breach, 1997. 172 pp.     

Determination of the Total Microbial Abundance in Black Sea Bottom Sediments Using Flow Cytometry

Microbiology - The known approaches to sample preparation have been improved to achieve a more complete detection of microorganisms of the Black Sea bottom sediments using flow cytometry of SYBR...