Long‐term changes in habitat selection and prey spectrum in a reintroduced Eurasian lynx (Lynx lynx) population in Switzerland

When wild‐caught Eurasian lynx (Lynx lynx) from the Slovak Carpathian Mountains were reintroduced to Central Switzerland in the early 1970s and spread through the north‐western Swiss Alps (NWA), they faced a largely unfamiliar landscape with strongly fragmented forests, high elevations, and intense human land use. For more than 30 years, radio‐collared lynx have been monitored during three different project periods (in the 1980s, 1990s, and 2010s). Our study explored, how lynx over generations have learned to adjust to the alpine environment. We predicted that (1) lynx nowadays select more strongly for open habitats, higher elevations, and steep slopes compared to the early stages of recolonization and that (2) consequently, there were significant changes in the Eurasian lynx’ prey spectrum. To test our predictions, we analyzed telemetry data (VHF, GPS) of 13 adult resident lynx in the NWA over 35 years, using Resource Selection Functions. Furthermore, we compared kills recorded from different individuals inhabiting the same region during three project periods. In general, lynx preferred forested areas, but over the years, they avoided open habitat less. Compared to the early stage of the recolonization, lynx in the most recent project period selected for higher elevations and the proportion of chamois in their prey spectrum surmounted that of roe deer. Potential driving factors for the observed changes could be increasing tolerance to human presence, intraspecific competition, or fitness benefits through exploitation of new resources. Long‐term studies like ours provide important insight into how animals can respond to sudden environmental changes, e.g., in the course of translocations into new areas or anthropogenic alterations of their habitats.     

Spatial density estimates of Eurasian lynx (Lynx lynx) in the French Jura and Vosges Mountains

Obtaining estimates of animal population density is a key step in providing sound conservation and management strategies for wildlife. For many large carnivores however, estimating density is difficult because these species are elusive and wide‐ranging. Here, we focus on providing the first density estimates of the Eurasian lynx (Lynx lynx) in the French Jura and Vosges mountains. We sampled a total of 413 camera trapping sites (with two cameras per site) between January 2011 and April 2016 in seven study areas across seven counties of the French Jura and Vosges mountains. We obtained 592 lynx detections over 19,035 trap days in the Jura mountains and 0 detection over 6,804 trap days in the Vosges mountains. Based on coat patterns, we identified a total number of 92 unique individuals from photographs, including 16 females, 13 males, and 63 individuals of unknown sex. Using spatial capture–recapture (SCR) models, we estimated abundance in the study areas between 5 (SE = 0.1) and 29 (0.2) lynx and density between 0.24 (SE = 0.02) and 0.91 (SE = 0.03) lynx per 100 km². We also provide a comparison with nonspatial density estimates and discuss the observed discrepancies. Our study is yet another example of the advantage of combining SCR methods and noninvasive sampling techniques to estimate density for elusive and wide‐ranging species, like large carnivores. While the estimated densities in the French Jura mountains are comparable to other lynx populations in Europe, the fact that we detected no lynx in the Vosges mountains is alarming. Connectivity should be encouraged between the French Jura mountains, the Vosges mountains, and the Palatinate Forest in Germany where a reintroduction program is currently ongoing. Our density estimates will help in setting a baseline conservation status for the lynx population in France.     

Carnivoran resource and habitat use in the context of a Late Miocene faunal turnover episode

We investigate resource and habitat use by apex predators through stable isotope analysis at two Spanish Late Miocene localities: Los Valles de Fuentidueña (~9.6 Ma, LVF) and Cerro de los Batallones (~9.1 Ma, BAT). The temporal window represented by LVF and BAT was crucial in the shaping of the current Iberian mammalian structure because it corresponds to the initial stages of a faunal turnover episode and regional environmental change at ~9.5–8.5 Ma (Vallesian–Turolian transition), associated with an increase in the seasonality of precipitation. Herbivore and carnivore δ¹³C and δ¹⁸O values do not point to significant changes in either the vegetation cover (a woodland to mesic C₃ grassland) or the hydrological regime during the time lapse represented between LVF and BAT. This suggests that the environmental shift recorded around the Vallesian–Turolian boundary may have occurred later in time, since LVF and BAT ages are synchronic with the onset of the turnover event. From the standpoint of predator–prey evaluation by means of stable isotope analysis, statistical post hoc tests, mixing model output, and the assessment of niche occupation by LVF and BAT carnivores point to high levels of interspecific competition among large active carnivores, albeit some genera, such as the amphicyonid Magericyon and specially the hyaenid Lycyaena, seemed to avoid competition by taking prey from a more open habitat. Despite the drop in diversity and change in faunal components observed between the LVF and BAT assemblages, a high degree of resource and habitat competition is evident from stable isotope data.     

Population differentiation in the context of Holocene climate change for a migratory marine species,the southern elephant seal

Understanding observed patterns of connectivity requires an understanding of the evolutionary processes that determine genetic structure among populations, with the most common models being associated with isolation by distance, allopatry or vicariance. Pinnipeds are annual breeders with the capacity for extensive range overlap during seasonal migrations, establishing the potential for the evolution of isolation by distance. Here, we assess the pattern of differentiation among six breeding colonies of the southern elephant seal, Mirounga leonina, based on mtDNA and 15 neutral microsatellite DNA markers, and consider measures of their demography and connectivity. We show that all breeding colonies are genetically divergent and that connectivity in this highly mobile pinniped is not strongly associated with geographic distance, but more likely linked to Holocene climate change and demographic processes. Estimates of divergence times between populations were all after the last glacial maximum, and there was evidence for directional migration in a clockwise pattern (with the prevailing current) around the Antarctic. We discuss the mechanisms by which climate change may have contributed to the contemporary genetic structure of southern elephant seal populations and the broader implications.     

Low genetic variability, female-biased dispersal and high movement rates in an urban population of Eurasian badgers Meles meles

1. Urban and rural populations of animals can differ in their behaviour, both in order to meet their ecological requirements and due to the constraints imposed by different environments. The study of urban populations can therefore offer useful insights into the behavioural flexibility of a species as a whole, as well as indicating how the species in question adapts to a specifically urban environment. 2. The genetic structure of a population can provide information about social structure and movement patterns that is difficult to obtain by other means. Using non-invasively collected hair samples, we estimated the population size of Eurasian badgers Meles meles in the city of Brighton, England, and calculated population-specific parameters of genetic variability and sex-specific rates of outbreeding and dispersal. 3. Population density was high in the context of badger densities reported throughout their range. This was due to a high density of social groups rather than large numbers of individuals per group. 4. The allelic richness of the population was low compared with other British populations. However, the rate of extra-group paternity and the relatively frequent (mainly temporary) intergroup movements suggest that, on a local scale, the population was outbred. Although members of both sexes visited other groups, there was a trend for more females to make intergroup movements. 5. The results reveal that urban badgers can achieve high densities and suggest that while some population parameters are similar between urban and rural populations, the frequency of intergroup movements is higher among urban badgers. In a wider context, these results demonstrate the ability of non-invasive genetic sampling to provide information about the population density, social structure and behaviour of urban wildlife.     

The subtle role of climate change on population genetic structure in Canada lynx

Anthropogenically driven climatic change is expected to reshape global patterns of species distribution and abundance. Given recent links between genetic variation and environmental patterns, climate change may similarly impact genetic population structure, but we lack information on the spatial and mechanistic underpinnings of genetic–climate associations. Here, we show that current genetic variability of Canada lynx (Lynx canadensis) is strongly correlated with a winter climate gradient (i.e. increasing snow depth and winter precipitation from west‐to‐east) across the Pacific‐North American (PNO) to North Atlantic Oscillation (NAO) climatic systems. This relationship was stronger than isolation by distance and not explained by landscape variables or changes in abundance. Thus, these patterns suggest that individuals restricted dispersal across the climate boundary, likely in the absence of changes in habitat quality. We propose habitat imprinting on snow conditions as one possible explanation for this unusual phenomenon. Coupling historical climate data with future projections, we also found increasingly diverging snow conditions between the two climate systems. Based on genetic simulations using projected climate data (2041–2070), we predicted that this divergence could lead to a threefold increase in genetic differentiation, potentially leading to isolated east–west populations of lynx in North America. Our results imply that subtle genetic structure can be governed by current climate and that substantive genetic differentiation and related ecological divergence may arise from changing climate patterns.     

The global relationship between climate,net primary production and the diet of spiders

Aim We compiled data on prey utilization of spiders at a global scale to better understand the relationship between current climate or net primary production (NPP) and diet breadth, evenness and composition in spiders. We test whether the productivity and the diversity–climatic‐stability (DCS) hypotheses focusing on diversity patterns may also explain global patterns in prey utilization by web‐building and cursorial spiders. Location A global dataset of 95 data points from semi‐natural and natural terrestrial habitats spanning 41.3° S to 56.1° N. Methods We collected data on spider prey (29 groups, mostly order‐level invertebrate taxa) through extensive literature research to identify the relationship between climatic conditions and NPP and spider diets based on 66 studies of prey composition in 82 spider species. Results The number of prey groups in spider diets was positively related to NPP, after accounting for differences in sampling effort in the original studies. In general, diet breadth was significantly higher for spider species in tropical environments. Prey individuals in spider diets were more evenly distributed among different prey groups in warmer environments with lower fluctuations in precipitation. Collembola and other spiders were more common prey for spiders with a cursorial hunting mode. Myriapoda and Collembola were more common prey in cooler climates with more stable precipitation, whereas Isoptera, Lepidoptera, Psocoptera and Coleoptera showed the opposite pattern. Main conclusions The positive relationship between diet breadth and NPP and the negative relationship between prey evenness and seasonality in precipitation support the productivity and the DCS hypotheses, respectively. This effect on global patterns of invertebrate predator–prey interactions suggests that trophic interactions between spiders and their prey are sensitive to climatic conditions. Climatic conditions may not only affect spider community composition, but also considerably alter the functional role of these abundant invertebrate predators in terrestrial ecosystems.     

Proximate and ultimate causes of dispersal in the Iberian lynx Lynx pardinus

Most studies on the causes of animal dispersal focus on speciesof birds or small mammals, but there are few such studies onsolitary carnivores. A complete picture of the causes of animaldispersal is not possible without considering cases on a representativeset of animals. The Iberian lynx is a medium-size, solitarycarnivore that inhabits metapopulations, where dispersal playsa prominent role. Between 1983 and 1998 we studied the proximateand ultimate causes of dispersal in Iberian lynx in the Doñanametapopulation (southwestern Spain), based on radio-trackingof 49 individuals. Saturation of limited breeding areas in thissmall population leads to high dispersal rates in both sexes.Most lynxes dispersed from their natal area between 12 and 24months of age. Males younger than 1 year old tended to dispersein a higher proportion than females of the same age. However,high dispersal rates for both sexes by the age of 2 years andthe lack of differences in the dispersal distances do not supportinbreeding avoidance as an ultimate cause of dispersal. Dispersalmainly started between January and June (24/29 cases), whenmost social interactions occur, which supports the social subordinationhypothesis. Lynxes left the natal range at an earlier age fromthe local population with higher density, which supports intraspecificcompetition for resources as a cause for dispersal. However,prey seems not to be the limiting resource because dispersalmostly started during the season of increasing prey density,and individual probability of dispersal increases with preydensity in the natal area. Dispersers suffered higher mortalitythan nondispersing lynxes of the same age, due mostly to anthropogeniccauses. About half of the dispersers successfully settled ina territory at distances that differed between areas of origin,but not between sexes. Distances reached, shorter than thosereported for other similar-size solitary felids, are limitedby anthropogenic barriers that prevent connection with closermetapopulations.     

Geographic variation in growth response of Douglas‐fir to interannual climate variability and projected climate change

We used 179 tree ring chronologies of Douglas‐fir [Pseudotsuga menziesii (Mirb.) Franco] from the International Tree‐Ring Data Bank to study radial growth response to historical climate variability. For the coastal variety of Douglas‐fir, we found positive correlations of ring width with summer precipitation and temperature of the preceding winter, indicating that growth of coastal populations was limited by summer dryness and that photosynthesis in winter contributed to growth. For the interior variety, low precipitation and high growing season temperatures limited growth. Based on these relationships, we chose a simple heat moisture index (growing season temperature divided by precipitation of the preceding winter and current growing season) to predict growth response for the interior variety. For 105 tree ring chronologies or 81% of the interior samples, we found significant linear correlations with this heat moisture index, and moving correlation functions showed that the response was stable over time (1901–1980). We proceeded to use those relationships to predict regional growth response under 18 climate change scenarios for the 2020s, 2050s, and 2080s with unexpected results: for comparable changes in heat moisture index, the most southern and outlying populations of Douglas‐fir in Mexico showed the least reduction in productivity. Moderate growth reductions were found in the southern United States, and strongly negative response in the central Rocky Mountains. Growth reductions were further more pronounced for high than for low elevation populations. Based on regional differences in the slope of the growth–climate relationship, we propose that southern populations are better adapted to drought conditions and could therefore contain valuable genotypes for reforestation under climate change. The results support the view that climate change may impact species not just at the trailing edges but throughout their range due to genetic adaptation of populations to local environments.     

Influence of habitat discontinuity, geographical distance, and oceanography on fine-scale population genetic structure of copper rockfish (Sebastes caurinus)

The copper rockfish is a benthic, nonmigratory, temperate rocky reef marine species with pelagic larvae and juveniles. A previous range-wide study of the population-genetic structure of copper rockfish revealed a pattern consistent with isolation-by-distance. This could arise from an intrinsically limited dispersal capability in the species or from regularly-spaced extrinsic barriers that restrict gene flow (offshore jets that advect larvae offshore and/or habitat patchiness). Tissue samples were collected along the West Coast of the contiguous USA between Neah Bay, WA and San Diego, CA, with dense sampling along Oregon. At the whole-coast scale (approximately 2200 km), significant population subdivision (F(ST) = 0.0042), and a significant correlation between genetic and geographical distance were observed based on 11 microsatellite DNA loci. Population divergence was also significant among Oregon collections (approximately 450 km, F(ST) = 0.001). Hierarchical amova identified a weak but significant 130-km habitat break as a possible barrier to gene flow within Oregon, across which we estimated that dispersal (N(e)m) is half that of the coast-wide average. However, individual-based Bayesian analyses failed to identify more than a single population along the Oregon coast. In addition, no correlation between pairwise population genetic and geographical distances was detected at this scale. The offshore jet at Cape Blanco was not a significant barrier to gene flow in this species. These findings are consistent with low larval dispersal distances calculated in previous studies on this species, support a mesoscale dispersal model, and highlight the importance of continuity of habitat and adult population size in maintaining gene flow.     

The challenges of detecting subtle population structure and its importance for the conservation of emperor penguins

Understanding the boundaries of breeding populations is of great importance for conservation efforts and estimates of extinction risk for threatened species. However, determining these boundaries can be difficult when population structure is subtle. Emperor penguins are highly reliant on sea ice, and some populations may be in jeopardy as climate change alters sea‐ice extent and quality. An understanding of emperor penguin population structure is therefore urgently needed. Two previous studies have differed in their conclusions, particularly whether the Ross Sea, a major stronghold for the species, is isolated or not. We assessed emperor penguin population structure using 4,596 genome‐wide single nucleotide polymorphisms (SNPs), characterized in 110 individuals (10–16 per colony) from eight colonies around Antarctica. In contrast to a previous conclusion that emperor penguins are panmictic around the entire continent, we find that emperor penguins comprise at least four metapopulations, and that the Ross Sea is clearly a distinct metapopulation. Using larger sample sizes and a thorough assessment of the limitations of different analytical methods, we have shown that population structure within emperor penguins does exist and argue that its recognition is vital for the effective conservation of the species. We discuss the many difficulties that molecular ecologists and managers face in the detection and interpretation of subtle population structure using large SNP data sets, and argue that subtle structure should be taken into account when determining management strategies for threatened species, until accurate estimates of demographic connectivity among populations can be made.     

Modeling fish dynamics and effects of stress in a hydrologically pulsed ecosystem

Many wetlands undergo seasonal cycles in precipitation and water depth.This environmental seasonality is echoed in patterns of production of fishbiomass, which, in turn, influence the phenology of other components of thefood web, including wading birds. Human activities, such as drainage orother alterations of the hydrology, can exacerbate these natural cycles andresult in detrimental stresses on fish production and the higher trophic levels dependent on this production. In this paper we model theseasonal pattern of fish production in a freshwater marsh, with specialreference to the Everglades/Big Cypress region of southern Florida.The model illustrates the temporal pattern of production through theyear, which can result in very high densities of fish at the end of ahydroperiod (period of flooding), aswell as the importance of ponds and other deep depressions, both as refugia and sinks during dry periods. The model predicts that: (1) there is an effective threshold in the length of the hydroperiod that must beexceeded for high fish-population densities to be produced, (2) large,piscivorous fishes do not appear tohave a major impact on smaller fishes in the marsh habitat, and (3) therecovery of small-fish populations in the marsh following a major droughtmay require up to a year. The last of these results is relevant toassessing anthropogenic impacts on marsh production, as these effectsmay increase the severity and frequency of droughts.     

Diet of Eurasian lynx, Lynx lynx, in the boreal forest of southeastern Norway: the relative importance of livestock and hares at low roe deer density

The year-round food habits of lynx were studied using radio-telemetry and snow-tracking in the boreal forest of southeastern Norway. The main objectives of the study were to clarify the importance of domestic sheep and small prey species in the diet of lynx in an area with a very low density of roe deer. During the period 1995–1999, we found 193 scats and 358 kills made by lynx. Our results indicate that roe deer were the most common prey species (contributing to 83 and 34% of the biomass consumed in winter and summer, respectively), although a wide range of other species were also found, including mountain hares, tetranoids, red foxes, domestic sheep, wild reindeer, and even moose. Most of the diet was obtained by predation, although we did document several cases of scavenging. Roe deer were more important in the diet in winter than in summer, perhaps because they were easier to locate in winter as they clustered around feeding sites. In summer, domestic sheep and small prey increased in importance. Despite the very low density of roe deer in this study area, lynx seemed to still specialise on them, although domestic sheep did constitute a significant amount to their diet, especially for males and yearlings. However, the contribution of sheep to summer diet was far from that expected if their relative density was considered.     

Contrasting population genetic structure for workers and queens in the putatively unicolonial ant Formica exsecta

The theory of inclusive fitness provides a powerful explanation for reproductive altruism in social insects, whereby workers gain inclusive fitness benefit by rearing the brood of related queens. Some ant species, however, have unicolonial population structures where multiple nests, each containing numerous queens, are interconnected and individuals move freely between nests. In such cases, nestmate relatedness values may often be indistinguishable from zero, which is problematic for inclusive fitness-based explanations of reproductive altruism. We conducted a detailed population genetic study in the polygynous ant Formica exsecta, which has been suggested to form unicolonial populations in its native habitat. Analyses based on adult workers indeed confirmed a genetic structuring consistent with a unicolonial population structure. However, at the population level the genetic structuring inferred from worker pupae was not consistent with a unicolonial population structure, but rather suggested a multicolonial population structure of extended family-based nests. These contrasting patterns suggest limited queen dispersal and free adult worker dispersal. That workers indeed disperse as adults was confirmed by mark-recapture measures showing consistent worker movement between nests. Together, these findings describe a new form of social organization, which possibly also characterizes other ant species forming unicolonial populations in their native habitats. Moreover, the genetic analyses also revealed that while worker nestmate relatedness was indistinguishable from zero at a small geographical scale, it was significantly positive at the population level. This highlights the need to consider the relevant geographical scale when investigating the role of inclusive fitness as a selective force maintaining reproductive altruism.     

Ecological costs of climate change on marine predator–prey population distributions by 2050

Identifying and quantifying the effects of climate change that alter the habitat overlap of marine predators and their prey population distributions is of great importance for the sustainable management of populations. This study uses Bayesian joint models with integrated nested Laplace approximation (INLA) to predict future spatial density distributions in the form of common spatial trends of predator–prey overlap in 2050 under the “business‐as‐usual, worst‐case” climate change scenario. This was done for combinations of six mobile marine predator species (gray seal, harbor seal, harbor porpoise, common guillemot, black‐legged kittiwake, and northern gannet) and two of their common prey species (herring and sandeels). A range of five explanatory variables that cover both physical and biological aspects of critical marine habitat were used as follows: bottom temperature, stratification, depth‐averaged speed, net primary production, and maximum subsurface chlorophyll. Four different methods were explored to quantify relative ecological cost/benefits of climate change to the common spatial trends of predator–prey density distributions. All but one future joint model showed significant decreases in overall spatial percentage change. The most dramatic loss in predator–prey population overlap was shown by harbor seals with large declines in the common spatial trend for both prey species. On the positive side, both gannets and guillemots are projected to have localized regions with increased overlap with sandeels. Most joint predator–prey models showed large changes in centroid location, however the direction of change in centroids was not simply northwards, but mostly ranged from northwest to northeast. This approach can be very useful in informing the design of spatial management policies under climate change by using the potential differences in ecological costs to weigh up the trade‐offs in decisions involving issues of large‐scale spatial use of our oceans, such as marine protected areas, commercial fishing, and large‐scale marine renewable developments.     

The Biology of Tiger Sharks, Galeocerdo Cuvier, in Shark Bay, Western Australia: Sex Ratio, Size Distribution, Diet, and Seasonal Changes in Catch Rates

Tiger sharks, Galeocerdo cuvier, are apex predators in a variety of nearshore ecosystems throughout the world. This study investigates the biology of tiger sharks in the shallow seagrass ecosystem of Shark Bay, Western Australia. Tiger sharks (n = 252) were the most commonly caught species (94%) compared to other large sharks. Tiger sharks ranged from 148–407cm TL. The overall sex ratio was biased towards females (1.8:1), but the sex ratio of mature animals (> 300cm TL) did not differ from 1:1. Contrary to previous accounts, tiger sharks were caught more often in all habitats during daylight hours than at night. Tiger shark catch rates were highly correlated with water temperature and were highest when water temperatures were above 19°C. The seasonal abundance of tiger sharks is correlated to both water temperature and the occurrence of their main prey: sea snakes and dugongs, Dugong dugon. Stomach contents analysis indicated that sea turtles and smaller elasmobranchs were also common prey. The importance of major seagrass grazers (dugongs and green sea turtles, Chelonia mydas) in the diet of tiger sharks suggests the possibility that these sharks are keystone predators in this ecosystem.     

Physical barriers and corridors in urban habitats affect colonisation and parasitism rates of a specialist leaf miner

1. Urban environments are fragmented habitats characterised by the presence of physical barriers, which may negatively affect dispersal and colonisation by insect herbivores and their natural enemies. Conversely, plants growing along pavements may function as dispersal corridors, helping to moderate the harmful effects of resource patch isolation on organism movement and population persistence. 2. We experimentally tested the effects of walls as physical barriers to the dispersal of the leaf miner Liriomyza commelinae Frost and colonisation of its host plant, Commelina erecta L., in urban habitats. We also evaluated whether plants along pavements could act as corridors for this species. 3. We exposed experimental host plants to the leaf miner in houses with front gardens and back yards, the latter being completely surrounded by walls. The front gardens had walls but none separating them from the pavement. Previously mined plants were also exposed to parasitoids in the yards to determine parasitoid attack. 4. Liriomyza commelinae took longer to colonise back yards with higher walls, and the abundance of mined plants along pavements reduced the colonisation time. Leaf‐miner abundance was marginally affected by the yard type, and was lower in back yards. Cumulative parasitism rates decreased with increasing distance at which mined plants were placed from pavements. 5. Constructions act as physical barriers, having a negative impact on colonisation of host plants by leaf miners. The function of pavements as corridors seems to depend on the abundance of mined plants. Parasitism may be affected by distance from the corridor rather than physical barriers or other potential hosts.     

A triple threat: high population density,high foraging intensity and flexible habitat preferences explain high impact of feral cats on prey

Alien mammalian carnivores have contributed disproportionately to global loss of biodiversity. In Australia, predation by the feral cat and red fox is one of the most significant causes of the decline of native vertebrates. To discover why cats have greater impacts on prey than native predators, we compared the ecology of the feral cat to a marsupial counterpart, the spotted-tailed quoll. Individual prey are 20–200 times more likely to encounter feral cats, because of the combined effects of cats'' higher population densities, greater intensity of home-range use and broader habitat preferences. These characteristics also mean that the costs to the prey of adopting anti-predator behaviours against feral cats are likely to be much higher than adopting such behaviours in response to spotted-tailed quolls, due to the reliability and ubiquity of feral cat cues. These results help explain the devastating impacts of cats on wildlife in Australia and other parts of the world.