Direct isolation of tobacco necrosis virus from soils

Summary In TNV-bearing soils, the virus occurred adsorbed to soil colloids in low levels. By direct assay, the TNV could be more readily isolated from the rhizosphere of naturally infected cluster bean plants. The level of reaction of the TNV isolated from the rhizosphere soil was the same as TNV-D (cb isolate) in precipitin ring tests with antisera against TNV-A and TNV-D. The phenomenon of release of TNV from the infected roots into the soil and adsorption of TNV particles to colloidal particles in the soil are discussed from the point of ecology and stability of TNV in soils.     

Crystallization and preliminary X-ray diffraction studies of tobacco necrosis virus

Tobacco necrosis virus is a spherical plant virus consisting of 180 copies of coat protein and a single-stranded RNA. The virus has been crystallized in cubic space group P4(2)32 with a = 338 A. The locations and the orientations of the two virus particles in the unit cell have been determined on the basis of the symmetries of both the particle and the crystal. The crystal diffracts X-rays to at least 2.5 A resolution and is quite stable to X-ray beams (1 A = 0.1 nm).     

Structure of EDTA-treated satellite tobacco necrosis virus at pH 6.5

The crystal structure of EDTA-treated satellite tobacco necrosis virus (STNV) at pH 6.5 has been determined to 7.5 A resolution (1 A = 0.1 nm) with molecular replacement techniques, using the known structure of the protein subunit. The calcium ions at the 3-fold contacts are absent, whereas the calcium ions on the 5-fold axes still remain. The protein shell is slightly expanded. The expansion does not impose any large conformational changes on the subunits and the subunit contacts are to a large extent retained. The electron density map shows high levels of density in the RNA region. It is found close to the protein shell but well-separated from the protein. This density indicates a preferential ordering of the RNA in certain regions, but does not allow a detailed interpretation of the RNA conformation. A similar density in the RNA region is also found in a low resolution map of native STNV.     

Crystal structure of tobacco necrosis virus at 2.25 A resolution

The crystal structure of tobacco necrosis virus (TNV) has been determined by real-space averaging with 5-fold non-crystallographic symmetry, and refined to R=25.3 % for diffraction data to 2.25 A resolution. A total of 180 subunits form a T=3 virus shell with a diameter of about 280 A and a small protrusion at the 5-fold axis. In 276 amino acid residues, the respective amino terminal 86, 87 and 56 residues of the A, B and C subunits are disordered. No density for the RNA was found. The subunits have a "jelly roll" beta-barrel structure, as have the structures of the subunits of other spherical viruses. The tertiary and quaternary structures of TNV are, in particular, similar to those of southern bean mosaic virus, although they are classified in different groups. Invisible residues 1 to 56 with a high level of basic residues are considered to be located inside the particle. Sequence comparison of the coat proteins of several TNV strains showed that the sequences of the disordered segment diverge considerably as compared with those of the ordered segment, consistent with a small tertiary structural constraint being imposed on the N-terminal segment. Basic residues are localized on the subunit interfaces or inner surface of the capsid. Positive charges of the basic residues facing the interior, as well as those of the N-terminal segment, may neutralize the negative charge of the RNA inside. Five calcium ions per icosahedral asymmetric unit are located at the subunit interfaces; three are close to the exterior surface, the other two away from it. The environments of the first three are similar, and those of the other two sites are similar. These calcium ions are assumed to be responsible for the stabilization/transition of the quaternary structure of the shell. Three peptide segments ordered only in the C subunits are clustered around each 3-fold (quasi-6-fold) axis forming a beta-annulus, and may lead to quasi-equivalent interactions for the organization of the T=3 shell.     

Chenopodium necrosis: a distinctive strain of tobacco necrosis virus isolated from river water

A distinctive strain of tobacco necrosis virus (TNV) of unknown source was repeatedly isolated from water of the River Avon (Warwickshire) and two of its tributaries (R. Swift and R. Alne) using a technique developed for the concentration and isolation of water-borne bacteriophages. The same strain was isolated from the rivers Cam and Thames and from Lake Esthwaite (Cumbria) together with tomato bushy stunt virus. The TNV strain, designated Chenopodium necrosis (TNV-CN) was mechanically transmissible to C. amaranticolor and C. quinoa in both of which it caused local lesions and systemic infection. TNV-CN caused no infection when inoculated to tobacco (Nicotiana tabacum cv. White Burley) plants. The virus was not adsorbed to soil, could be isolated from leachate of soil in which systemically infected C. quinoa were grown and C. quinoa plants became infected when grown in soil watered with suspensions of the virus. The virus was not transmitted by Myzus persicae but was vectored by the zoospores of a lettuce isolate of Olpidium brassicae. TNV-CN was infective after 10 min at 85 °C., 3 wk at 20 °C and when diluted to 10^-8 but not 10^-9. Purified virus preparations contained c. 26 nm isometric virus particles. TNV-CN contained single-stranded RNA (mol. wt 1·5 × 10⁶) and one protein (mol. wt c. 26·4 × 10³) which co-electrophoresed in polyacrylamide gels with the protein of the D strain of TNV (TNV-D). Analytical centrifugation of TNV-CN indicated a single component virus with the same sedimentation coefficient (s₂₀, w= 115S) and buoyant density (1·385) in a CsCl gradient as those of TNV-D. TNV-CN and TNV-D were indistinguishable serologically.     

The 3'' untranslated region of satellite tobacco necrosis virus RNA stimulates translation in vitro.

The RNA of satellite tobacco necrosis virus (STNV) is a monocistronic messenger that lacks both a 5' cap structure and a 3' poly(A) tail. We show that in a cell-free translation system derived from wheat germ, STNV RNA lacking the 600-nucleotide trailer is translated an order of magnitude less efficiently than full-size RNA. Deletion analyses positioned the translational enhancer domain (TED) within a conserved hairpin structure immediately downstream from the coat protein cistron. TED enhances translation when fused to a heterologous mRNA, but the level of enhancement depends on the nature of the 5' untranslated sequence and is maximal in combination with the STNV leader. The STNV leader and TED have two regions of complementarity. One of the complementary regions in TED resembles picornavirus box A, which is involved in cap-independent translation but which is located upstream of the coding region.     

Amino acid sequence of the coat protein subunit in satellite tobacco necrosis virus

The primary structure of the coat protein subunit in satellite tobacco necrosis virus has been investigated. The results obtained are consistent with and support the proposal for the amino acid sequence made from the nucleotide sequence of RNA (Ysebaert et al., 1980). This would imply that no intervening sequences of RNA occur in the cistron for the satellite tobacco necrosis virus coat protein. The polypeptide chain of the protein consists of 195 amino acid residues. It contains one sulfhydryl group but no disulfide bridges. The distribution of various kinds of amino acid residues along the chain is markedly uneven.     

High genetic stability in natural populations of the plant RNA virus tobacco mild green mosaic virus

Summary Quantitative studies on the genetic variation of plant viruses are very scarce, in spite of their theoretical and applied importance. We report here on the genetic variability of field isolates of the plant RNA virus tobacco mild green mosaic virus (TMGMV) naturally infecting the wild plantNicotiana glauca Grah. The populations studied were composed of a high number of haplotypes. Two main features are found regarding TMGMV variation: First, there is no correlation between genetic proximity of isolates and geographic proximity of the sites from which they were obtained; and second, the estimated divergence among haplotypes is low, and values are maintained regardless of the scale of the distance between the sites from which the isolates come. No comparable studies have been done with a plant RNA virus, and these two features seem to be unique for this system as compared with other RNA viruses.     

Abscisic acid is involved in chitosan-induced resistance to tobacco necrosis virus (TNV)

Chitosan (CHT) antiviral activity has been further investigated in the pathosystem Phaseolus vulgaris - tobacco necrosis virus (TNV). CHT application elicited both callose apposition and ABA accumulation in leaf tissues, at 12 and 24h after treatment, respectively, and induced a high level of resistance against TNV. Besides, treatment with the ABA inhibitor nordihydroguaiaretic acid (NDGA), before CHT application, reduced both callose deposition and plant resistance to the virus, thus indicating the involvement of ABA in these processes. Exogenous application of ABA also induced a significant resistance to TNV, though this resistance was abolished by NDGA pre-treatment. These results, overall, indicate that the rise of ABA synthesis induced by chitosan plays an important role in enhancing callose deposition but the latter has only a partial effect on virus spreading, which must be constraint by other resistance mechanisms.     

5'‐ and 3'‐sequences of satellite tobacco necrosis virus RNA promoting translation in tobacco

The RNA of satellite tobacco necrosis virus (STNV) is a monocistronic messenger that lacks both a 5′ cap and a 3′ poly(A) tail. The STNV trailer contains an autonomous translational enhancer domain (TED) that promotes translation in vitro by more than one order of magnitude when combined with the 5′-terminal 173 nt of STNV RNA. We now show that the responsible sequence within the 5′ region maps to the first 38 nt of the STNV RNA. Mutational analysis indicated that the primary sequence of the STNV 5′ 38 nt and TED is important for translation stimulation in vitro, but did not reveal a role for the complementarity between the two. Translation of chimeric STNV-cat RNAs in tobacco protoplasts showed that TED promotes translation in vivo of RNAs lacking a cap and/or a poly(A) tail. Similar to in vitro, TED-dependent translation in tobacco was stimulated further by the STNV 5′ 38 nt.     

An improved method for electroporation in plant protoplasts: infection of tobacco protoplasts by tobacco mosaic virus particles

Conditions of electroporation were optimized for introduction of tobacco mosaic virus (TMV) particles into tobacco mesophyll protoplasts (Nicotiana tabacum L. cv. Petit Havana SR1). Compared with conditions for TMV-RNA uptake, a longer electric pulse was necessary at the same voltage to induce TMV particle entry. Up to 80–90% of the protoplasts were infected with TMV particles after exposure to a 10 msec pulse at 200 V (0.67 KV/cm) in a 0.5 M mannitol solution. Protoplast viability was slightly lower than for controls which did not undergo electroporation. The presence of buffer in the mannitol solution reduced the net voltage in the solution which resulted in a significant decrease of the level of infection. These results suggest that the membrane pores resulting from an electrical pulse were wide enough for TMV particles (300 × 18 nm) to enter protoplasts.