Influence of Soil Organic Matter on Copper Extraction from Contaminated Soil

Column experiments of copper extraction from four contaminated soils characterized by a content of Soil Organic Matter (SOM) ranging from 1% to 25% are presented and discussed. The extraction was performed by flushing the soil with an aqueous solution of a sodium salt of ethylene diamminotetraacetic acid (EDTA). Preliminary tests were performed on a soil containing 25% of organic matter, to investigate the influence of pH, concentration and volumes of EDTA on its chelant action and on the dissolution of SOM. Having selected the optimal conditions for the extraction process, a further series of tests was conducted on the four soils to evaluate the influence of organic content on copper extraction yields. EDTA solutions at 0.01 M, 0.05 M, 0.1 and 0.2 M were injected at 0.33 ml/s; copper and organic matter extraction yield were determined. At a pH of 5, 15 pore volume (PV) of a solution containing 0.05M EDTA, extracted about 99% of copper contained by the soil with the higher organic matter content. Under the same conditions, and for soil with > 6% SOM, extraction yields over 80% were achieved, while at lower organic content, copper extraction was dramatically reduced. This was attributed to the formation of highly stable copper-humate complexes and to their increasingly dissolution that occurred in the soils with higher organic matter level.

Experimental tests performed at different contamination levels (1200 mg/kg, 2400 mg/kg) showed that EDTA extraction effectiveness also depended upon initial soil Cu concentration.     

Isolation of Saprophytic Basidiomycetes from Soil

A method with the combined advantages of soil particle washing, selective inhibitors, and an indicator substrate was developed to isolate saprophytic basidiomycetes from soil. Organic particles were washed from soil and plated on a medium containing lignin, guaiacol, and benomyl, which reduced mold growth and allowed detection of basidiomycetes producing laccase or peroxidase. The 64 soil samples yielded 67 basidiomycete isolates, representing 51 groups on the basis of morphology and physiology. This method should facilitate investigations into the biodiversity of soil basidiomycetes and yield organisms that are useful in bioremediation of soils contaminated with pesticides or other recalcitrant aromatic compounds.     

Isolation of Arthrobacter Bacteriophage from Soil

Soil was percolated with water and various nutrient solutions, and then the percolates were analyzed for bacteriophages which produced plaques on various Arthrobacter strains. The water percolates did not contain detectable phage. In contrast, phages for A. globiformis strains ATCC 8010 and 4336, and for several recent Arthrobacter species soil isolates, were easily detected in nutrient broth, soil extract, and cation-complete medium percolates. These percolates did not contain phage that produced plaques on A. oxydans and a recent Arthrobacter species soil isolate. Percolation with a selective nicotine-salts solution was required for demonstrating phage for these bacteria. None of the percolates contained phage for five additional named Arthrobacter species. In addition, phages were not detected for A. crystallopoietes in a 2-hydroxypyridine percolate of soil. Based on their lytic spectra, the phage isolates from this soil were relatively host specific.     

Myxobacters from Arid Mexican Soil

Myxobacters were found to be common inhabitants of the arid soils from the Monterrey, Nuevo Leon, Mexico, area. Thirteen species of the genera Myxococcus, Archangium, Cystobacter, Stigmatella, Polyangium, and Chondromyces were isolated on a mineral salts agar supplemented with bakers' yeast and filter paper. Greater species diversity per soil sample was found in the region receiving 400 to 800 mm of annual rainfall as compared with soils from an area having only 200 to 400 mm of rainfall.     

Mycobacterium malmoense Isolated from Soil

Mycobacterium malmoense was isolated from a soil sample, and biological, biochemical, antigenic, and genetic characteristics of the isolate were described. This is the first report of isolation of this organism in Japan.     

Attachment to Autoclaved Soil of Bacterial Cells from Pure Cultures of Soil Isolates

Pure cultures of Arthrobacter globiformis and four fresh soil isolates were incubated individually in autoclaved soil, in both the presence and absence of glucose. These bacteria grew in the soil and, except for A. globiformis, eventually attached firmly to the soil solids. Firmly attached cells were defined as those which could not be separated from the soil solids by blending combined with a series of low-speed centrifugal washings. The attachment attained by the soil isolates appeared to duplicate that of the overall bacterial population that resides naturally in unaltered, unamended soil. Cell attachment in the autoclaved-soil system was accelerated slightly by glucose, but, except for one soil isolate, several months of incubation were still required before firm attachment was complete. Electron microscopy indicated that all attached cells produced extracellular polysaccharide slimes in the autoclaved soil and that these materials appeared to connect the cells to surrounding pieces of soil debris. The actual role of polysaccharides in attachment was not clear, however, because at least one of these organisms possessed extracellular slime during the long period in which it had not yet attached to the soil.     

Removal of Cyanide Contaminants from Rhizosphere Soil

Cyanide and cyanide-containing compounds from anthropogenic sources can be an environmental threat because of their potential toxicity. A remediation option for cyanide-contaminated soil may be through the use of plants and associated rhizosphere microorganimsms that have the ability to degrade cyanide compounds. Cyanogenic plant species are known to produce cyanide, but they also have the ability to degrade these compounds. In addition, the presence of these plants in soil may result in an increase in cyanide degrading microorganisms in the rhizosphere. Two cyanogenic species (Sorghum bicolor and Linum usitassium) and a noncyanogenic species (Panicum virgatum) were selected for a 200-day phytoremediation study to assess their potential use for removal of cyanide from soil. For both cyanogenic species, approximately 85% of the iron cyanide in soil was removed, whereas very little iron cyanide was removed in the unvegetated control or in the presence of Panicum virgatum. In addition, the activity of microbial communities in the rhizosphere of cyanogenic plants was higher than in cyanide-contaminated soil from unvegetated soil.     

Isolation of Acinetobacter from Soil and Water

An enrichment culture procedure for isolating members of the genus Acinetobacter from soil and water is described. It involves the use of vigorously aerated mineral media at relative low pH, supplemented with acetate or other suitable carbon source and nitrate as nitrogen source. With this method, virtually all samples of soil and water yielded representatives of this genus. Semiquantitative comparisons of the numbers of Acinetobacter and of all bacteria capable of aerobic growth in a complex medium revealed that Acinetobacter constituted no less than 0.001% of the total heterotrophic aerobic population in soil and water and was one of the predominant organisms in some water samples.     

从土壤中提取DNA方法比较

设计并比较了3种直接从土壤中提取DNA的方法。试验结果表明:3种方法都可以从土壤中提取到分子量大于23.13 kb的DNA的片段,每克干土DNA的提取量为2.5~31μg,不同方法间在DNA产量、纯度等方面存在较大差异。     

Separation and Purification of Bacteria from Soil

Bacteria were released and separated from soil by a simple blending-centrifugation procedure. The percent yield of bacterial cells (microscopic counts) in the supernatants varied over a wide range depending on the soil type. The superantants contained large amounts of noncellular organic material and clay particles. Further purification of the bacterial cells was obtained by centrifugation in density gradients, whereby the clay particles and part of the organic materials sedimented. A large proportion of the bacteria also sedimented through the density gradient, showing that they had a buoyant density above 1.2 g/ml. Attachment to clay minerals and humic material may account for this apparently high buoyant density. The percent yield of cells was negatively correlated with the clay content of the soils, whereas the purity was positively correlated with it. The cell size distribution and the relative frequency of colony-forming cells were similar in the soil homogenate, the supernatants after blending-centrifugation, and the purified bacterial fraction. In purified bacterial fraction from a clay loam, the microscopically measured biomass could account for 20 to 25% of the total C and 30 to 40% of the total N as cellular C and N. The amount of cellular C and N may be higher, however, owing to an underestimation of the cell diameter during fluorescence. A part of the contamination could be ascribed to extracellular structures as well as partly decayed cells, which were not revealed by fluorescence microscopy.     

Effect of Soil Dose on Bioavailability of Lead from Mining Waste Soil in Rats

Abstract

The purpose of this study was to determine the extent of absorption of lead (Pb) in mining waste soil from Butte, Montana. It is the first study to fully investigate the bioavailability of lead in soils containing mine waste using a soil dose response approach. Young 7–8 week-old male and female Sprague-Dawley rats (5 animals/sex/group) were given mining waste soil [810 ppm lead (Test Soil I) or 3,908 ppm lead (Test Soil III)] mixed in a purified diet (AIN—76?) at four different dose levels (0.2, 0.5, 2 and 5% dietary soil) for 30 consecutive days. The test soil dose levels at 2 and 5% were chosen to bracket a pica-for-soil child's soil exposure levels. A pica-for-soil child is a young child who eats large quantities of soil (10 g day^?1). Standard groups included untreated controls and dosed feed soluble lead acetate groups (1, 10, 25, 100 and 250 μg Pb g^?1 feed). The concentrations of lead acetate were chosen to bracket the test soil dose levels of lead. Liver, blood and femur, representing the three compartments in which lead is distributed in the body, were analyzed for total lead concentration using graphite furnace atomic absorption spectroscopy. Clinical signs, body weight, food consumption and liver weights for treated and standard groups were similar to control. Tissue lead concentrations from test soil animals were significantly lower than the tissue concentrations for the dosed feed lead acetate group. Group mean whole blood, bone and liver lead concentrations increased with increasing dose levels for most treatment groups. The increases in blood, bone and liver lead concentrations were not proportional with increasing dose levels and plateaued at the high dose levels. Relative percent bioavailability values, based on dosed feed soluble lead as the standard, were independent of the two different test soils, dose levels or sex, and only slightly dependent on the tissue (blood > bone, liver). Overall relative percent bioavailability values were 20% based on the blood data; 9% based on the bone data; and 8% based on the liver data (2 and 5% dose levels only). The results of this study will provide the scientific validity needed to determine the significance of lead exposure from Butte soils in assessing human health risks as part of the Superfund Remedial Investigation/Feasibility Study process.     

Soil fungi from orissa (India) IV. Soil fungi of paddy fields

Summary A total number of 165 fungi representing 51 genera have been isolated from 22 soil samples collected at various stages of cultivation and crop growth from paddy fields of Orissa. Many rare fungi as well as two gymnoascomycetous fungi new to science have been isolated. Certain of the fungi were found to be ecologically mature and dominant in the paddy fields and were present during all the stages of cultivation or growth of paddy plants. Not much difference in the species of fungi was observed to exist between Cuttack and Sambalpur plots, between fertile and less fertile plots but a definite difference was found between the fungal flora of dalua and main crop seasons. Among the four media used, rose bengal streptomycin agar was found to be the best isolation medium.     

Microbiological Comparison of Surface Soil and Unsaturated Subsurface Soil from a Semiarid High Desert

Thirty-two chemoheterotrophic bacteria were isolated from unsaturated subsurface soil samples obtained from ca. 70 m below land surface in a high desert in southeastern Idaho. Most isolates were gram positive (84%) and strict aerobes (79%). Acridine orange direct counts of microbes in one subsurface sample showed lower numbers than similar counts performed on surface soils from the same location (ca. 5 × 10⁵ versus 2 × 10⁶ cells per g [dry weight] of soil), but higher numbers than those from plate counts performed on the subsurface material. Another sample taken from the same depth at another location showed no evidence of colonies under identical conditions. Soil analyses indicated that subsurface sediments versus surface soils were slightly alkaline (pH 7.9 versus 7.4), had a higher water content (25.7 versus 6.3%), and had lower organic carbon concentrations (0.05 to 0.17 versus 0.25% of soil dry weight). Analyses of biologically relevant gases from the unsaturated subsurface indicated an aerobic environment. As in other unsaturated soil environments, either a high proportion of bacteria in these subsurface sediments are not viable or they are incapable of growth on conventional media under aerobic conditions. The presence and numbers of bacteria in these deep sediments may be influenced by colonization opportunities afforded by periodic percolation of surface water through fractures in overlying strata.     

石油污染土壤中植物根际促生菌的筛选及特性分析

以1-氨基环丙烷-1-羧酸(ACC)为唯一氮源,从黑龙江省大庆地区石油污染土壤的狼尾草根际土壤中分离筛选出2株产ACC脱氨酶的细菌,F4-1和F4-2。对分离的菌株进行生理生化和16S rDNA序列鉴定,确定F4-1为肠杆菌属(Enterobactersp.),F4-2为克雷伯菌属(Klebsiellasp.)。菌株F4-1的ACC脱氨酶活性为(1.40±0.17)μmolα-KA.(mg Pr.h)-1,高于F4-2的(1.03±0.03)μmolα-KA.(mg Pr.h)-1。随着L-Trp浓度的增加,菌株F4-1和F4-2的吲哚乙酸(IAA)合成量相应增加,总体上看F4-1的IAA合成能力高于F4-2。F4-1合成嗜铁素的能力也高于F4-2。     

Isolation and Characterization of Uracil-Degrading Clostridia from Soil

Five strains of uracil-degrading clostridia were isolated from soil using an enrichment medium containing uracil as the principal energy source. All the isolates resembled Clostridium glycolicum , although they lacked the characteristic ability to ferment ethylene glycol.
Both representative isolates and a reference strain of Cl. glycolicum degraded uracil and produced β-alanine when grown in a semi-defined medium. Thus, the uracil-degrading activity was similar to that described previously for Cl. uracilicum.     

Extraction Efficiency of Belonolaimus longicaudatus from Sandy Soil

Numbers of Belonolaimus longicaudatus extracted from sandy soils (91-92% sand) by sieving and centrifugation were only 40-55% of those extracted by sieving and incubation on a Baermann tray. Residues normally discarded at each step of the sieving plus Baermann tray extraction procedure were examined for nematodes to obtain estimates of extraction efficiencies. For third-stage and fourth-stage juveniles, males, and females, estimates of extraction efficiency ranged from 60 to 65% in one experiment and 73 to 82% in another. Estimated extraction efficiencies for second-stage juveniles were lower (33% in one experiment, 67% in another) due to losses during sieving. When sterilized soil was seeded with known numbers of B. longicaudatus, 60% of second-stage juveniles and 68-76% of other stages were recovered. Most stages of B. longicaudatus could be extracted from these soils by sieving plus Baermann incubation with an efficiency of 60-70%.