Chemical preservation of plants and insects in natural resins

The morphological preservation of fossils in amber is remarkable, but their chemical composition is largely unknown. The likelihood of DNA preservation in amber has been questioned but, surprisingly, the fate of more decay-resistant macromolecules such as ligno-cellulose in plants or the chitin–protein complex in insect cuticle has not been investigated. Here we report the results of investigations using pyrolysis-gas chromatography/mass spectrometry (py-GC/MS) of the tissues of insects and the plant Hymenaea from ancient and sub-fossil resins (2–20 ka) from Kenya, and from Dominican amber (25–30 Ma). The volatile components of the resin have penetrated even the internal tissues, resulting in the exceptional three-dimensional preservation of amber inclusions. Chitin is preserved in the bee and ligno-cellulose in the Hymenaea leaf from the Kenyan resins. There was no trace, however, of these macromolecules in tissues in Dominican amber. The presence of aliphatic polymer and sulphur-containing moieties in these tissues indicates that they have undergone diagenetic alteration; in view of this, the preservation in Dominican amber of a macromolecule as labile as DNA would be extraordinary.     

世界各地琥珀中的脊椎动物包裹体

琥珀是一种经过石化作用形成的天然树脂化石,亦是一种有机宝石。琥珀在全球范围分布较广,尤其在欧洲的波罗的海、中美洲的多米尼加-墨西哥、亚洲的缅甸等区域有着大量的发现。全球各地琥珀中,昆虫包裹体最为常见,脊椎动物包裹体数量较少。但相对保存于沉积岩中的传统脊椎动物化石来说,保存于琥珀中的脊椎动物包裹体可以额外提供生物体的软组织、原始死亡状态、生存环境等信息,且可以保存比传统骨骼化石更直观、立体、精细的生物形态学信息,为研究生物演化、恢复古环境、古生态和古行为学等方面提供了重要的依据。文中主要总结了来自全球各琥珀产区迄今为止发现的各种脊椎动物包裹体,包括了非鸟恐龙、鸟类、哺乳类、爬行类、两栖类等,以及它们背后隐藏的演化信息,并对未来的研究方向与趋势做了初步的展望。     

Protist-like inclusions in amber, as evidenced by Charentes amber

The mid-Cretaceous amber of France contains thousands of protist-like inclusions similar in shape to some ciliates, flagellates and amoebae. The sheer abundance of these inclusions and their size variation within a single amber piece are not concordant with true fossil protists. French amber is coniferous in origin, which generally does not preserve well protists without cell walls. Thus, it would be surprising if French Cretaceous amber had preserved millions of protists. Here, we present a survey of the protist-like inclusions from French amber and attempt to elucidate their origins.Diverse Cretaceous ambers (from Spain, Germany and Lebanon), also derived from conifer resins, contain thousands of protist-like inclusions. In contrast, Tertiary ambers and modern resins are poor in protist-like fossils. This suggests these inclusions originated from early Cretaceous plant resins, probably secreted with the resin by trees that did not survive after the Cretaceous (such as the Cheirolepidiaceae). A review of the recent literature on amber microfossils indicates several protist-like inclusions that are unlikely to have a biological origin have already been described as real fossil protists. This is problematic in that it will bias our understanding of protist evolution.     

Miocene Ethiopian amber: A new source of fossil cryptogams

Amber is renowned for the exceptional preservation state of its inclusions, allowing detailed morphological analysis and providing relevant environmental, palaeoecological, geographical, and geological information. Amber deposits are predominantly known from North America, Europe, and Asia, and are considered to be rare on the continents that formed Gondwana. The recent discovery of fossiliferous amber deposits in Ethiopia, therefore, provides an inimitable opportunity to close gaps in the fossil record of African terrestrial biota and to study organisms which are otherwise rare in the fossil record. Here we show that diverse cryptogams are preserved in highest fidelity in Miocene Ethiopian amber. We describe gametophyte fragments of four liverworts: Thysananthus aethiopicus sp. nov. (Porellales, Lejeuneaceae), Lejeunea abyssinicoides sp. nov. (Porellales, Lejeuneaceae), Frullania shewanensis sp. nov. (Porellales, Frullaniaceae), and Frullania palaeoafricana sp. nov. (Porellales, Frullaniaceae). Furthermore, we describe a pleurocarpous moss of the extant genus Isopterygium (Hypnales, Pylaisiadelphaceae) and a lichen representing the order Lecanorales. These new specimens represent the first amber fossils of liverworts, mosses, and lichens from the African continent and render Ethiopian amber as one of the few worldwide amber deposits preserving bryophytes (mosses and liverworts) or lichens. Fossil species of Thysananthus were recorded in Eocene Baltic and Oligocene Bitterfeld as well as Miocene Dominican and probably also Miocene Mexican ambers. Fossils that can unequivocally be assigned to Lejeunea have only been found in Dominican amber so far. Neotropical ambers contain only one taxon of Frullania to date, while the genus is most diverse in Baltic, Bitterfeld, and Rovno ambers, formed in temperate regions. The new fossils support a tropical to subtropical origin of Ethiopian amber. The new African liverwort fossils are included in an updated list of leafy liverworts described from worldwide Cenozoic ambers to date.     

Sciadopitys cladodes from Eocene Baltic amber

The Baltic amber deposit represents the largest accumulation of any fossil resin worldwide and hundreds of thousands of entrapped arthropods have been recovered so far. The source plants of Baltic amber, however, are still controversial, and the botanical composition of the ‘Baltic amber forest’ remains poorly studied. Here, we provide the first unequivocal Baltic amber inclusions of the umbrella pine Sciadopitys (Sciadopityaceae), a genus that has been suggested as the source of succinite (the main variety of Baltic amber) based on chemical analyses. As previously suggested sciadopitoid inclusions must be reconsidered as being notional, representing angiosperm leaves instead, the new fossils are the first unambiguous macrofossil evidence of Sciadopitys from the ‘Baltic amber forest’, and the first pre‐Oligocene macrofossil record of Sciadopitys from Europe. The fossil Sciadopitys cladodes provide new insights into the conifer diversity of the ‘Baltic amber forest’ and broaden the picture of its palaeoecology, indicating the presence of humid swamp to raised bog habitats. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2016, 180 , 258–268.     

缅甸琥珀内含物形态结构在X射线下的可辨识性

【目的】产自缅甸北部胡康河谷的缅甸琥珀形成于白垩纪中期。其艺术价值很高,同时其内含物的生物多样性程度也很高,故其科学价值也不可估量。显微CT能够提供化石(琥珀)内部解剖结构的高分辨率断层图像,故该方法日渐成为目前琥珀研究中的常用方法之一。然而在可见光下可见的琥珀内的生物结构,在X射线下却有不同的结果,这与现生研究材料在显微CT下的表现非常不同。本研究对产自胡康河谷的9块缅甸琥珀进行显微CT检测,试图对这个特殊的现象进行较为系统的解读。【方法】利用数码相机(Nikon 5200D)拍摄琥珀照片,并用Helicon Focus 5.3软件合成。通过显微CT技术扫描琥珀和计算机断层重建技术重建出缅甸琥珀内含物的三维结构形态。【结果】显微CT检测结果主要分为3种:完全无衬度、部分结构有衬度和整体结构有较好衬度。本研究对有较好衬度的琥珀内含物进行了三维重建,展示了琥珀内含物的外部和内部三维结构。【结论】琥珀内含物的可见光成像和X射线成像不存在一一对应关系,其原因和琥珀保存的好坏以及琥珀的密度差、琥珀围岩之间的对比度差异有关。琥珀形成和埋藏过程中的物理和化学变化非常复杂,其机理的探究也更为复杂和困难,本文对这个现象的主要类型做了较为初步的阐述,后续研究需要更为全面的选样和更为严格的实验设计才能够最终解决这个埋藏学上的难题。     

The Range of Bioinclusions and Pseudoinclusions Preserved in a New Turonian (~90 Ma) Amber Occurrence from Southern Australia

A new Turonian amber occurrence, representing the oldest in situ amber locality in Australia and the southern-most locality in Gondwana, has recently been discovered in the Otway Basin of Victoria. The amber was collected from petroleum cores and many pieces contain a range of inclusions that can provide information on the depositional history of the resin. To date, one species of fern spore (Cyathidites minor) and one species of lycophyte spore (Kraeuselisporites sp?) have been conclusively identified in the amber, along with filamentous microorganisms and degraded plant matter. Several samples are also rife with pseudoinclusions as reported recently in other ambers. The abundance of preserved particulate debris and wind dispersed spores suggest that the Otway amber formed subaerially. Furthermore, based on the range of bioinclusions and forms of pseudoinclusions preserved within a single piece of amber, the locus of hardening for individual samples is variably interpreted as occurring in the tree tops, on the tree trunk or on the ground surface. Notably, specific inclusion assemblages are associated with certain colours of amber. By extension, and in accordance with recent studies, amber colour may be indicative of depositional environment. Variation in the environment of solidification may, therefore, be sufficient to account for the broad range of morphological characteristics preserved in a single amber deposit.     

Multivariate analysis on the distribution of elements in plants

The present review accentuates the elemental composition of plants as investigated by various researchers utilizing sophisticated techniques. Plants contain plethora of elements which extend their benefits to humans both in terms of medicine as well as nutrition. Therefore, there is a need to explore the elemental composition of plants to investigate their nutraceutical importance. In this review, the elemental data was analyzed using different multivariate techniques. The average values of elements used in this review are sodium (Na) (241.1 µg/g dw), magnesium (Mg) (1202.4 µg/g dw), aluminum (Al) (159.6 µg/g dw), silicon (Si) (133.7 µg/g dw), phosphorus (P) (1947 µg/g dw), sulfur (S) (1483.1 µg/g dw), chloride (Cl) (624.5 µg/g dw), potassium (K) (3008.5 µg/g dw), calcium (Ca) (1663.1 µg/g dw) and iron (Fe) (143.6 µg/g dw) respectively. Maximum accumulation of Na, K, Ca, Mg, Fe, P and S occurs in Poaceae, Lamiaceae, Lauraceae, Sapotaceae, Apiaceae, Pedaliaceae and Brassicaceae, respectively.     

How long can insect species exist? Evidence from extant and fossil Micromalthus beetles (Insecta: Coleoptera)

Six new fossils of Micromalthus (Coleoptera: Archostemata) from Dominican amber are compared with extant and previously described fossil micromalthid beetles. The amber inclusions are well preserved and all important morphological features are visible. Taking into account the morphological variability of the extant species Micromalthus debilis LeConte, 1878 , it is not possible to find any morphological features that distinguish the fossils from the extant species. This also applies to the Dominican amber inclusion described as Micromalthus anasi Perkovsky, 2008, which therefore is considered a junior synonym of M. debilis. The lack of morphological change in M. debilis over time might possibly be explained by unusually stable environmental conditions, as this species occupies a very specialized ecological niche in decaying timber. A general survey of fossil insects indistinguishable from extant species is presented. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 158 , 300–311.     

丝氨酸消旋酶在中枢神经系统中的研究进展

中枢神经系统中,丝氨酸消旋酶是5'吡哆醛依赖性酶,通过合成调控D型丝氨酸,参与N-甲基-D-天冬氨酸受体介导的神经发生、突触可塑性及学习记忆的调节。丝氨酸消旋酶表达与活性可以通过转录、翻译、翻译后修饰,小分子配基与蛋白相互作用,亚细胞分布多种方式调节。丝氨酸消旋酶失调影响了精神分裂症、脑损伤及神经退行性疾病等多种中枢神经系统疾病。本文简要介绍丝氨酸消旋酶的结构、分布、调节因素和在中枢神经系统中的生理病理功能,为神经及精神疾病的治疗和药物开发提供了新的思路。     

Microbe‐like inclusions in tree resins and implications for the fossil record of protists in amber

During the past two decades, a plethora of fossil micro‐organisms have been described from various Triassic to Miocene ambers. However, in addition to entrapped microbes, ambers commonly contain microscopic inclusions that sometimes resemble amoebae, ciliates, microfungi, and unicellular algae in size and shape, but do not provide further diagnostic features thereof. For a better assessment of the actual fossil record of unicellular eukaryotes in amber, we studied equivalent inclusions in modern resin of the Araucariaceae; this conifer family comprises important amber‐producers in Earth history. Using time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS), we investigated the chemical nature of the inclusion matter and the resin matrix. Whereas the matrix, as expected, showed a more hydrocarbon/aromatic‐dominated composition, the inclusions contain abundant salt ions and polar organics. However, the absence of signals characteristic for cellular biomass, namely distinctive proteinaceous amino acids and lipid moieties, indicates that the inclusions do not contain microbial cellular matter but salts and hydrophilic organic substances that probably derived from the plant itself. Rather than representing protists or their remains, these microbe‐like inclusions, for which we propose the term ‘pseudoinclusions’, consist of compounds that are immiscible with the terpenoid resin matrix and were probably secreted in small amounts together with the actual resin by the plant tissue. Consequently, reports of protists from amber that are only based on the similarity of the overall shape and size to extant taxa, but do not provide relevant features at light‐microscopical and ultrastructural level, cannot be accepted as unambiguous fossil evidence for these particular groups.     

Ecology and taphonomy of Dominican Republic amber and its inclusions

The taphonomic influences upon fossil faunas are generally assumed to be substantial, but in amber they have been little investigated. By comparing the inclusions in Tertiary amber from the Dominican Republic (Smithsonian Institution's Brodzinsky-Lopez Peña collection) with modern insect populations sampled using various methods and from different habitats, it is possible to test taphonomic hypotheses that bear on interpretations of amber faunas. The biota trapped in amber is here viewed as analogous to modem faunas sampled with man-made traps. Using cluster analysis (Manhattan and Euclidian distance measures -UPGMA clustering algorithm) to compare faunas, the amber-trap fauna is most closely reproduced by present day collection using emergence traps and also shows a strong similarity to the fauna of pitfall trap samples. Faunal dissimilarities indicate that the utility of Dominican Republic amber fossils is limited for ecological studies of the canopy and shrub layers of forests, or of the Orders Coleoptera, Diptera or Hymenoptera. Similarities between modern faunas and the amber fauna allow predictions about the ecological setting of Tertiary amber production: this is indicated as primary rain forest, with regenerating patches of secondary growth, in a low-altitude riparian location. □ Amber, Dominican Republic, Palaeogene, ecology, taphonomy.     

New bethylid and chrysidid wasps (Hymenoptera: Chrysidoidea) from Canadian Late Cretaceous amber

A new bethylid species, Celonophamia granama, and two new chrysidid species, Procleptes eoliami, and P. hopejohnsonae, are described from Late Cretaceous (Campanian) amber collected at the Grassy Lake locality in Alberta, Canada. Within the deposit these taxa constitute the first bethylid, and the second and third chrysidid species to be described, respectively. The new taxa expand the sparse fossil record of Chrysidoidea, particularly that of Chrysididae—a group that was previously represented by only three described species in the Mesozoic. The presence of Celonophamia species in both Canadian amber and Siberian (Taimyr) amber further emphasizes faunal similarities between these two northern Late Cretaceous amber deposits. Given the prevalence of metallic coloration in Chrysididae, the specimens described here also provide evidence for the taphonomic alteration of perceived insect colors in Cretaceous amber inclusions.     

Reactive oxygen species formation and cell death in catalase-deficient tobacco leaf disks exposed to cadmium

The physiological responses of tobacco (Nicotiana tabacum L.) to oxidative stress induced by cadmium were examined with respect to reactive oxygen species (ROS) formation, antioxidant enzymes activities, and cell death appearance in wild-type SR1 and catalase-deficient CAT1AS plants. Leaf disks treated with 100 or 500 µM CdCl₂ increased Evans blue staining and leakage of electrolytes in SR1 or CAT1AS plants, more pronouncedly in the transgenic cultivar, but without evidence of lipid peroxidation in any of the cultivars compared to controls. Cadmium significantly reduced the NADPH oxidase-dependent O ₂ ^? formation in a dose dependent manner in SR1 very strongly at 500 µM (to 5% of the activity in the nontreated SR1 leaf disks). In CAT1AS, the NADPH oxidase activity was constitutively reduced at 50% with respect to that of SR1, but the magnitude of the decay was less prominent in this cultivar, reaching an average of 64% of the C at 21 h, for both Cd concentrations. Hydrogen peroxide formation was only slightly increased in SR1 or CAT1AS leaf disks at 21 h of exposure compared to the respective controls. Cd increased superoxide dismutase activity more than six times at 21 h in CAT1AS, but not in SR1 and reduced catalase activity by 59% at 21 h of treatment only in SR1 plants. Despite that catalase expression was constitutively lower in CATAS1 compared to SR1 nontreated leaf disks, 500 µM CdCl₂ almost doubled it only in CAT1AS at 21 h. The mechanisms underlying Cd-induced cell death were possibly not related exclusively to ROS formation or detoxification in tobacco SR1 or CAT1AS plants.     

How diverse were ferns in the Baltic amber forest?

Diverse temperate forest types and a high atmospheric humidity have recently been suggested for the Eocene source area of Baltic amber. However, ferns are astonishingly rare as inclusions in this amber, which is in contrast to other seed‐free land plants, fungi, and lichens. Moreover, the identities of some of the few described putative fern taxa are dubious, and some fossils were even assigned to the Paleozoic seed fern genera Alethopteris, Pecopteris and to the form genus Sphenopteris containing Paleozoic and Mesozoic fern‐like leaf fossils. Here, we review previously described fern inclusions from Baltic amber and identify further fern‐like leaf inclusions as belonging to the extant angiosperm genus Comptonia (sweet ferns, Myricaceae). We conclude that only one taxon, Matonia striata (Matoniaceae), can with confidence be identified as a Polypodiopsida representative. Although “Pecopteris” humboldtiana is so far only known as sterile foliage, its leaf morphology strongly suggests that also this taxon belongs to the Polypodiopsida rather than to any other tracheophyte lineage. We propose accommodating “Pecopteris” humboldtiana in the new genus Berendtiopteris. “Alethopteris” serrata and “Sphenopteris” phyllocladoides are not to be regarded as evidence of ferns from Baltic amber. Reinvestigation of the holotypes of these two taxa did not reveal to which tracheophyte lineages these fossils belong. We suggest that the scarcity of fern remains from Baltic amber may reflect both a relatively low fern diversity in the source area of the fossil resin, and an absence or rarity of epiphytic and climbing ferns as observed in modern temperate forest ecosystems.     

Immobilization of Norwegian Reindeer (Rangifer tarandus tarandus) and Svalbard Reindeer (R. t. platyrhynchus) with Medetomidine and Medetomidine-Ketamine and Reversal of Immobilization with Atipamezole

The sedative action of medetomidine (-ketamine) was studied in 12 captive Norwegian semidomesticated reindeer (NR), including 4 newborn calves, and in 7 free-living Svalbard reindeer (SR). Medetomidine, with or without ketamine, caused effective, reliable immobilization in NR. Doses of 50–200 µg/kg medetomidine alone or 30-125 µg/kg medetomidine combined with ⩾ 300 µg/kg ketamine induced complete immobilization, good muscle relaxation and persistent, deep sedation with little respiratory depression in NR; SR required higher doses. Atipamezole successfully antagonized medetomidine (-ketamine) resulting in rapid and persistent reversal of immobilization in all cases (NR and SR). Both medetomidine and atipamezole had wide safety margins and no conspicuous lasting side effects after reversal.     

Visualising the ionome in resistant and susceptible plant–pathogen interactions

At the morphological and anatomical levels, the ionome, or the elemental composition of an organism, is an understudied area of plant biology. In particular, the ionomic responses of plant–pathogen interactions are scarcely described, and there are no studies on immune reactions. In this study we explored two X-ray fluorescence (XRF)-based ionome visualisation methods (benchtop- and synchrotron-based micro-XRF [µXRF]), as well as the quantitative inductively coupled plasma optical emission spectroscopy (ICP-OES) method, to investigate the changes that occur in the ionome of compatible and incompatible plant–pathogen interactions. We utilised the agronomically important and comprehensively studied interaction between potato (Solanum tuberosum) and the late blight oomycete pathogen Phytophthora infestans as an example. We used one late blight-susceptible potato cultivar and two resistant transgenic plant lines (only differing from the susceptible cultivar in one or three resistance genes) both in control and P. infestans-inoculated conditions. In the lesions from the compatible interaction, we observed rearrangements of several elements, including a decrease of the mobile macronutrient potassium (K) and an increase in iron (Fe) and manganese (Mn), compared with the tissue outside the lesion. Interestingly, we observed distinctly different distribution patterns of accumulation at the site of inoculation in the resistant lines for calcium (Ca), magnesium (Mg), Mn and silicon (Si) compared to the susceptible cultivar. The results reveal different ionomes in diseased plants compared to resistant plants. Our results demonstrate a technical advance and pave the way for deeper studies of the plant–pathogen ionome in the future.