Modern foraminiferal distribution and diversity in two atolls from the Maldives,Indian Ocean

Foraminifera from the coral-reef lagoons of two atolls are used to investigate the distribution and diversity of assemblages in the central Indian Ocean. Eight assemblages and 270 species of foraminifera are identified. Three assemblages are reefal and dominated by Amphistegina and Calcarina. Only one lagoon assemblage is present in both atolls, which is characterized by abundant Ammonia sp. 1 and smaller miliolid foraminifera. In Ari Atoll, abundant Amphistegina sp. 1, Operculina ammonoides, Amphistegina radiata and Nummulites venosa characterize one lagoon assemblage and abundant Neoeponides bradyi and Textularia cf. T. cushmani characterize the other. In Rasdhoo Atoll, abundant Textularia gr. foliacea and Spiroloculina nummiformis characterize one lagoon assemblage and abundant Textularia cf. T. cushmani and Textularia sp. 5 characterize the other. The assemblages compare well with sedimentological characteristics, which is also reflected in their distributions. Species diversity in the Maldives appears to be higher than the western Indian Ocean region due to the stronger influence of central Indo-Pacific faunas. It is not however, as high as the central Indo-Pacific region, which may be due to lower habitat diversity.     

The Pleistocene easternmost distribution in Eurasia of the species associated with the Eemian Palaeoloxodon antiquus assemblage

• 1 The Palaeoloxodon antiquus large‐mammal assemblage was typical of the late middle and late Pleistocene interglacials in Europe. This review examines the assemblage's origins, dispersal and cohesiveness in Eurasia.
• 2 During the more climatically equable middle‐Pleistocene periods, the Palaeoloxodon assemblage (or closely related) species occurred across central Eurasia almost simultaneously. In Central and Western Europe, these species responded to climatic changes together as an unvarying interglacial assemblage, whereas in Eastern Europe and Siberia, they occurred in diverging assemblages. The boundary of the Palaeoloxodon assemblage can be drawn roughly from Poland to Romania.
• 3 In Central and Western Europe this interglacial assemblage last occurred during the Eemian. During this period many of the Palaeoloxodon assemblage species may also have co‐occurred in south‐eastern Europe and, except for Bubalus murrensis and Hippopotamus amphibius, further eastwards. The extinct species of the Palaeoloxodon assemblage disappeared in Siberia and Central Asia prior to Europe and the Caucasus whereas the extant species were already present in their modern distribution areas.
• 4 A quantitative study of faunal associations across Eurasia, following much‐needed comprehensive systematic reviews, would further elucidate the patterns of faunal change associated with local and global climatic changes during the middle to late Pleistocene.

     

Fish otoliths from the pre-evaporitic (Early Messinian) sediments of northern Italy: their stratigraphic and palaeobiogeographic significance

The study of otolith assemblages from the pre-evaporitic Messinian deposits allows the reconstruction of a fauna of 79 taxa of which 35 could be identified at the specific level. Three of these are new: Diaphus rubus, Myctophum coppa, and Uranoscopus ciabatta. The assemblages reflect mainly a neritic environment influenced by the oceanic realm. Analysis of the global present-day geographic distribution of 42 of the recognised Messinian genera indicates that 88% of these are still living in the Mediterranean, 98% in the Atlantic and 78% in the Indo-Pacific realm. These results are in good agreement with the evolutionary trends documented for the Oligocene and Miocene teleost fauna, specifically an increase in percentage of genera inhabiting the modern Mediterranean, a very high percentage of Atlantic and Indo-Pacific genera, and a slight fall of the importance of present-day Indo-Pacific genera from the Rupelian up to the Late Miocene. Analysing the composition of the Early Messinian fauna at the level of nominal species indicates that about 53% of the species represented in the assemblages are still living in the Recent Mediterranean, and that a significant number of these were already present in the Tortonian. It is interesting that these species are mainly neritic. This seems to confirm that the close affinity of the fossil assemblage with the present-day Mediterranean neritic fauna, which was already recorded at the genus level for the Rupelian fauna, persists during the Neogene and continues until the Pleistocene.     

Early-Middle Pleistocene leaves of extinct and extant Proteaceae from western Tasmania, Australia

Fossil leaves of six species of Proteaceae which are no longer native to Tasmania occur in Early Pleistocene sediments at Regatta Point, western Tasmania, Australia. These species probably became extinct during the Early or Middle Pleistocene as the direct or indirect result of glacial/interglacial cycles. Only one extinct species of Proteaceae is known from younger sediments. Leaves of another four species which can be confidently assigned to extant Tasmanian species, and from an extant genus also occur in these sediments. Another extant species occurs in Early Pleistocene sediments at the Huskisson/Marionoak Divide, western Tasmania, and another extant species occurs in Early-Middle Pleistocene sediments at Regatta Point. These fossils imply that the number of species and of genera of Proteaceae in western Tasmania has not increased since the Early Pleistocene, and may have declined. More species of Banksia and Telopea and at least as many species of Orites occurred in Early Pleistocene western Tasmania than now occur in that region. The presence of extant species in the Early Pleistocene suggests that the turnover time of many proteaceous species is of the order of millions of years. Two new species, Telopea strahanensis and Orites truncata , are proposed.     

The shark assemblage at French Frigate Shoals atoll, Hawai'i: species composition, abundance and habitat use

Empirical data on the abundance and habitat preferences of coral reef top predators are needed to evaluate their ecological impacts and guide management decisions. We used longline surveys to quantify the shark assemblage at French Frigate Shoals (FFS) atoll from May to August 2009. Fishing effort consisted of 189 longline sets totaling 6,862 hook hours of soak time. A total of 221 sharks from 7 species were captured, among which Galapagos (Carcharhinus galapagensis, 36.2%), gray reef (Carcharhinus amblyrhynchos, 25.8%) and tiger (Galeocerdo cuvier, 20.4%) sharks were numerically dominant. A lack of blacktip reef sharks (Carcharhinus melanopterus) distinguished the FFS shark assemblage from those at many other atolls in the Indo-Pacific. Compared to prior underwater visual survey estimates, longline methods more accurately represented species abundance and composition for the majority of shark species. Sharks were significantly less abundant in the shallow lagoon than adjacent habitats. Recaptures of Galapagos sharks provided the first empirical estimate of population size for any Galapagos shark population. The overall recapture rate was 5.4%. Multiple closed population models were evaluated, with Chao M(h) ranking best in model performance and yielding a population estimate of 668 sharks with 95% confidence intervals ranging from 289-1720. Low shark abundance in the shallow lagoon habitats suggests removal of a small number of sharks from the immediate vicinity of lagoonal islets may reduce short-term predation on endangered monk seal (Monachus schauinslandi) pups, but considerable fishing effort would be required to catch even a small number of sharks. Additional data on long-term movements and habitat use of sharks at FFS are required to better assess the likely ecological impacts of shark culling.     

The origin and evolution of seahorses (genus Hippocampus): a phylogenetic study using the cytochrome b gene of mitochondrial DNA

Phylogenetic relationships among 93 specimens of 22 species of seahorses (genus Hippocampus) from the Atlantic and Indo-Pacific Oceans were analysed using cytochrome b gene sequence data. A maximum sequence divergence of 23.2% (Kimura 2-parameter model) suggests a pre-Tethyan origin for the genus. Despite a greater number of seahorse species in the Indo-Pacific than in the Atlantic Ocean, there was no compelling genetic evidence to support an Indo-Pacific origin for the genus Hippocampus. The phylogenetic data suggest that high diversity in the Indo-Pacific results from speciation events dating from the Pleistocene to the Miocene, or earlier. Both vicariance and dispersal events in structuring the current global distribution of seahorses. The results suggested that several species designations need re-evaluating, and further phylogeographic studies are required to determine patterns and processes of seahorse dispersal.     

广西崇左木榄山智人洞的鼠科化石

最近在广西崇左木榄山智人洞遗址采集到1件具有现代智人解剖特征初始状态的下颌骨和丰富的哺乳动物化石。啮齿类中的鼠科化石有锡金小鼠(Mus pahari)、中华姬鼠(Apodemus draco)、黑线姬鼠(Apodemus agrarius)、似德氏狨鼠(Hapalomys cf.H.delacouri)、笔尾树鼠(Chiropodomys gliroides)、社鼠(Niviventer confucianus)、针毛鼠(Niviventer fulvescens)、爱氏巨鼠(Leopoldamys edwardsi)、印度板齿鼠(Bandicota indica)、褐家鼠(Rattus norvegicus)和黄毛鼠(Rattus losea)共8属11种。这种全部由当地或邻近地区现生种类构成的组合显然比当地早更新世的三合大洞和川黔地区中更新世歌乐山期的鼠类组合进步, 而与广西田东雾云洞的鼠类组合相似, 其动物群的时代为晚更新世早期, 与不平衡铀系法得到的测年结果(距今约11万年)相吻合。智人洞鼠科动物的组合明显具有东洋界热带-亚热带动物群的特点, 其中林灌和草地型所占比例较大表明当时的森林面积可能减少、林灌和草地面积可能增加, 反映出当时的气候相对干旱。     

Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean

We investigated seasonal differences in community structure and activity (leucine incorporation) of the planktonic bacterial assemblage in the freshwater and brackish-water zones of a shallow coastal lagoon of the southwestern Atlantic Ocean. Alphaproteobacteria formed the dominant microbial group in both zones throughout the sampling period. After an intrusion of marine water, members of the SAR11 lineage became abundant in the brackish-water zone. These bacteria were apparently distributed over the lagoon during the following months until they constituted almost 30% of all prokaryotic cells at both sampling sites. At the first sampling date (March 2003) a single alphaproteobacterial species unrelated to SAR11, Sphingomonas echinoides, dominated the microbial assemblages in both zones of the lagoon concomitantly with a bloom of filamentous cyanobacteria. Pronounced maxima of leucine incorporation were observed once in each zone of the lagoon. In the freshwater zone, this highly active microbial assemblage was a mix of the typical bacteria lineages expected in aquatic systems. By contrast, a single bacterial genotype with >99% similarity to the facultative pathogen gammaproteobacterial species Stenotrophomonas maltophilia formed >90% of the bacterial assemblage (>10(7) cell ml(-1)) in the brackish-water zone at the time point of highest bacterial leucine incorporation. Moreover, these bacteria were equally dominant, albeit less active, in the freshwater zone. Thus, the pelagic zone of the studied lagoon harbored repeated short-term blooms of single bacterial species. This finding may have consequences for environmental protection.     

Phylogenetic relationships among the subfamily Coregoninae as revealed by mitochondrial DNA restriction analysis

Mitochondria1 DNA (mtDNA) restriction analysis was used to assess phylogenetic patterns among 21 taxa of the subfamily Coregoninae. The genus Prosopium formed a very distinct group differing by 10% (sequence divergence estimate) from other species. Coregonus and Stenodus species were closely related, diverging by sequence divergence estimates of less than 5.6%. These species split into two major sister groups. One comprised all 'true whitefish' (subgenus Coregonus ) and four cisco species (subgenus Leucichrhys ). The most distant species within this assemblage was the Acadian whitefish ( C. huntsmani ). The other group included all other cisco species and also the Inconnu ( Stenodus leucichthys ). These results supported a polyphyletic origin of the ciscoes, and did not support Stenodus as a sister taxon of the genus Coregonus . The levels of sequence divergence observed suggested that most extant coregonines radiated during the Pleistocene.     

The spatio-temporal colonization and diversification across the Indo-Pacific by a ‘great speciator’ (Aves,Erythropitta erythrogaster)

The Indo-Pacific region has arguably been the most important area for the formulation of theories about biogeography and speciation, but modern studies of the tempo, mode and magnitude of diversification across this region are scarce. We study the biogeographic history and characterize levels of diversification in the wide-ranging passerine bird Erythropitta erythrogaster using molecular, phylogeographic and population genetics methods, as well as morphometric and plumage analyses. Our results suggest that E. erythrogaster colonized the Indo-Pacific during the Pleistocene in an eastward direction following a stepping stone pathway, and that sea-level fluctuations during the Pleistocene may have promoted gene flow only locally. A molecular species delimitation test suggests that several allopatric island populations of E. erythrogaster may be regarded as species. Most of these putative new species are further characterized by diagnostic differences in plumage. Our study reconfirms the E. erythrogaster complex as a ‘great speciator’: it represents a complex of up to 17 allopatrically distributed, reciprocally monophyletic and/or morphologically diagnosable species that originated during the Pleistocene. Our results support the view that observed latitudinal gradients of genetic divergence among avian sister species may have been affected by incomplete knowledge of taxonomic limits in tropical bird species.     

Note on Cyclostomatous Bryozoa from Eilat, Israel

Five species of cyclostomatous Bryozoa are reported in an assemblage from the Red Sea at Eilat, Israel. Tuhulipora samuelsoni sp.n. is described. The fauna is closely related to known Indo-Pacific faunas.     

Blooms of Single Bacterial Species in a Coastal Lagoon of the Southwestern Atlantic Ocean

We investigated seasonal differences in community structure and activity (leucine incorporation) of the planktonic bacterial assemblage in the freshwater and brackish-water zones of a shallow coastal lagoon of the southwestern Atlantic Ocean. Alphaproteobacteria formed the dominant microbial group in both zones throughout the sampling period. After an intrusion of marine water, members of the SAR11 lineage became abundant in the brackish-water zone. These bacteria were apparently distributed over the lagoon during the following months until they constituted almost 30% of all prokaryotic cells at both sampling sites. At the first sampling date (March 2003) a single alphaproteobacterial species unrelated to SAR11, Sphingomonas echinoides, dominated the microbial assemblages in both zones of the lagoon concomitantly with a bloom of filamentous cyanobacteria. Pronounced maxima of leucine incorporation were observed once in each zone of the lagoon. In the freshwater zone, this highly active microbial assemblage was a mix of the typical bacteria lineages expected in aquatic systems. By contrast, a single bacterial genotype with >99% similarity to the facultative pathogen gammaproteobacterial species Stenotrophomonas maltophilia formed >90% of the bacterial assemblage (>10⁷ cell ml⁻¹) in the brackish-water zone at the time point of highest bacterial leucine incorporation. Moreover, these bacteria were equally dominant, albeit less active, in the freshwater zone. Thus, the pelagic zone of the studied lagoon harbored repeated short-term blooms of single bacterial species. This finding may have consequences for environmental protection.     

Phylogenetic relationship among horseshoe crab species: effect of substitution models on phylogenetic analyses

The horseshoe crabs, known as living fossils, have maintained their morphology almost unchanged for the past 150 million years. The little morphological differentiation among horseshoe crab lineages has resulted in substantial controversy concerning the phylogenetic relationship among the extant species of horseshoe crabs, especially among the three species in the Indo-Pacific region. Previous studies suggest that the three species constitute a phylogenetically unresolvable trichotomy, the result of a cladogenetic process leading to the formation of all three Indo-Pacific species in a short geological time. Data from two mitochondrial genes (for 16S ribosomal rRNA and cytochrome oxidase subunit I) and one nuclear gene (for coagulogen) in the four species of horseshoe crabs and outgroup species were used in a phylogenetic analysis with various substitution models. All three genes yield the same tree topology, with Tachypleus-gigas and Carcinoscorpius-rotundicauda grouped together as a monophyletic taxon. This topology is significantly better than all the alternatives when evaluated with the RELL (resampling estimated log-likelihood) method.     

Population genetics of speciation in nonmodel organisms: I. Ancestral polymorphism in mangroves

The level of DNA polymorphism in the ancestral species at the time of speciation can be estimated using DNA sequences from many loci sampled from 2 or more extant species. The comparison between ancestral and extant polymorphism can be informative about the population genetics of speciation. In this study, we collected and analyzed DNA sequences of approximately 60 genes from 4 species of Sonneratia, a common genus of mangroves on the Indo-Pacific coasts. We found that the 3 ancestral species were comparable to each other in terms of level of polymorphism. However, the ancestral species at the time of speciation were substantially more polymorphic than the extant geographical populations. This ancestral polymorphism is in fact larger than, or at least equal to, the level of polymorphism of the entire species across extant geographical populations. The observations are not fully compatible with speciation by strict allopatry. We suggest that, at the time of speciation, the ancestral species consisted of interconnected but strongly divided geographical populations. This population structure would give rise to high level of polymorphism across species range. This approach of studying the speciation history by genomic means should be applicable to nonmodel organisms.     

Species-level phylogeography and evolutionary history of the hyperdiverse marine gastropod genus Conus

Phylogenetic and paleontological analyses are combined to reveal patterns of species origination and divergence and to define the significance of potential and actual barriers to dispersal in Conus, a species-rich genus of predatory gastropods distributed throughout the world's tropical oceans. Species-level phylogenetic hypotheses are based on nucleotide sequences from the nuclear calmodulin and mitochondrial 16S rRNA genes of 138 Conus species from the Indo-Pacific, eastern Pacific, and Atlantic Ocean regions. Results indicate that extant species descend from two major lineages that diverged at least 33 mya. Their geographic distributions suggest that one clade originated in the Indo-Pacific and the other in the eastern Pacific + western Atlantic. Impediments to dispersal between the western Atlantic and Indian Oceans and the central and eastern Pacific Ocean may have promoted this early separation of Indo-Pacific and eastern Pacific + western Atlantic lineages of Conus. However, because both clades contain both Indo-Pacific and eastern Pacific + western Atlantic species, migrations must have occurred between these regions; at least four migration events took place between regions at different times. In at least three cases, incursions between regions appear to have crossed the East Pacific Barrier. The paleontological record illustrates that distinct sets of Conus species inhabited the Indo-Pacific, eastern Pacific + western Atlantic, and eastern Atlantic + former Tethys Realm in the Tertiary, as is the case today. The ranges of <1% of fossil species (N=841) spanned more than one of these regions throughout the evolutionary history of this group.     

Hemiptelea mikii sp. nov. (Ulmaceae), fossil fruits and woods from the pleistocene of central Japan

A new fossil species,Hemiptelea mikii, is described on the basis of fruits from the Pleistocene of central Japan. It is distinguished fromH. davidii, the only extant species of the genus restricted to Korea and China, in having shorter fruits. Fossil woods discovered from the same horizon differ from the extant one in some anatomical characteristics, and are assigned to the new fossil species. Taken together with earlier records of fossil fruit occurrence in the early and the middle Pleistocene of central Japan, the latest finding of fossil fruits and woods from the last glacial sediments (ca. 50,000 years ago) at Kita-egota site of Tokyo suggests thatH. mikii was widespread in central Japan throughout the Pleistocene and survived until as late as the Last Glacial age.     

Completeness of a fossil record: the Pleistocene echinoids of the Antilles

Diversity of Pleistocene marine invertebrates with single component, robust, easily identifiable skeletons shows a good correspondence to that of the Recent when compared between similar environments in the same region. Such comparisons are less easily made for multi-element skeletons. In the Antilles there are 24 extant species of echinoids in 0–30  m water depth. Considering all available fossils - complete tests, disarticulated spines, and test fragments and ossicles - the Pleistocene echinoids of the Antillean region have a high similarity with the extant shallow water fauna (c. 63% specific and 72% generic similarity). Many of the extant, shallow water, regular echinoid taxa are known from the Pleistocene, although irregular echinoids are less well represented. These results are comparable with those determined for coeval benthic invertebrates from this and other geographic regions, and indicate a high degree of similarity from a survey which is so far limited to only a few of the islands. Not all Pleistocene units considered herein were deposited in shallow water, but they include autochthonous specimens of taxa whose depth range extends beyond shallow water at the present day or presumed allochthonous specimens derived by downslope transport from shallower water, or both.     

贵州毕节发现古人类化石与哺乳动物群

2008年12月在贵州毕节团结乡首次发现麻窝口洞化石点,经2009年、2012年和2013年3次发掘,在麻窝口洞上部砂质黏土地层中共发现了四千余件哺乳动物牙齿化石。2013年7月发现的3枚古人类牙齿,分别为左上犬齿、左上第一臼齿和右上第二臼齿。人类牙齿尺寸偏小,臼齿咬合面沟纹简单,没有复杂的咬合面皱纹和附尖齿带结构,牙根短而不显粗壮,上述特点有别于我国已经发现的直立人和早期智人,可归入解剖学上的现代人。与人类相伴的哺乳动物化石,经初步鉴定共计8目20科43属53种,动物群组合反映出亚热带森林生态环境。根据动物群的时代特点,地貌地层及堆积物的光释光年代测定,指示毕节麻窝口洞古人类的时代可能为中更新世晚期,或者晚更新世早期,毕节古人类牙齿的发现为东亚地区现代人的起源及演化增添了新的证据。