The complete mitochondrial genomes of largemouth bass of the northern subspecies (Micropterus salmoides salmoides) and Florida subspecies (Micropterus salmoides floridanus) and their applications in the identification of largemouth bass species

The largemouth bass belongs to the family Centrarchidae, which includes two subspecies: the northern subspecies, Micropterus salmoides salmoides, and the Florida subspecies, Micropterus salmoides floridanus. In this study, the complete mitochondrial genomes of the two subspecies were sequenced, and their genetic differences were identified. The mitogenomes of M. s. salmoides and M. s. floridanus are 16,486 and 16,479?bp in length, respectively. The two subspecies consisted of 37 genes (13 protein-coding genes, 2 ribosomal RNA, and 22 transfer RNA), which are typical for vertebrate mtDNA. Phylogenetic analysis provided statistical support for the monophyly of the family Centrarchidae. Comparison of the two subspecies' mitogenomes revealed a relatively high number (450) of single nucleotide polymorphisms (SNPs) in protein-coding genes. We characterized SNPs in the partial cytochrome c oxidase subunit 1 gene of different individuals from three cultured populations, one wild northern subspecies population, and one wild Florida subspecies population. Twenty-eight SNPs were fixed with alternative nucleotides in the two subspecies, which could be used for differentiating them. Based on this gene, phylogenetic tree and genetic distance analyses supported that cultured largemouth bass in China belongs to the northern subspecies.     

The largemouth bass cytochrome b gene

The cytochrome b gene is one of the protein-coding genes of the mitochondrial genome that has gained importance because of the ease with which molecular techniques can be applied to the analysis of its structure. The nucleotide sequence of the largemouth bass ( Microplerus salmoides ) cytochrome b gene was determined and the inferred amino acid structure is presented in the form of a structural model derived originally from rat cytochrome b . The inferred amino acid sequences from divergent animal species are aligned and compared in the context of this model. The data suggest that regions of the gene may be evolving at different rates due to different selection pressures associated with functional constraints. Conserved and variable regions of cytochrome b have been identified and can be targeted for species identification, the examination of intraspeciflc variation, and phylogenetic reconstructions in future research.     

大口黑鲈微卫星DNA指纹图谱的构建和遗传结构分析

以国内目前养殖的大口黑鲈[Micropterus salmoides(Lacépède)]群体(CH)、2009年引进的佛罗里达亚种(FL-09)、2010年引进的佛罗里达亚种(FL-10)、2010年引进的北方亚种(NT-10)为实验材料,应用43个微卫星DNA标记对这4个大口黑鲈群体进行遗传检测,构建了各群体的微卫星DNA指纹图谱,并对其遗传结构进行分析。结果显示:CH、FL-09、FL-10和NT-10群体的平均等位基因数(A)分别为2.58、3.74、3.70和4.21,平均期望杂合度(He)分别为0.4549、0.4896、0.5010和0.6138,平均多态信息量(PIC)分别为0.3786、0.4443、0.4566和0.5546,表明国内目前养殖的大口黑鲈群体遗传多样性水平远远低于国外新引进的大口黑鲈群体。利用UPGMA法对4个群体进行聚类,结果 FL-09和FL-10聚为一支,遗传距离为0.0506;NT-10和CH聚为另一支,遗传距离为0.4244,推测FL-09和FL-10两个佛罗里达亚种属于相同的群体,而NT-10和CH两个北方亚种来自不同的群体,甚至不同的水系。同时从指纹图谱中,筛选到5个特异的微卫星标记(JZL114、MiSaTPW11、Lma120、Mdo6和Msal21),可以鉴别FL、NT-10和CH群体,其中MiSaTPW11和Msal21这两个标记组合可以完全鉴别这3个群体。将5个特异性微卫星标记的图谱数据转化成计算机可以识别的数码指纹,可以方便应用于大口黑鲈不同群体及其杂交种的鉴定。研究结果可以为我国大口黑鲈种质资源保存、品种鉴定和良种选育提供理论依据。     

Variations in piscivory of invasive largemouth bass <Emphasis Type="Italic">Micropterus salmoides</Emphasis> associated with pond environments

Introductions of non-native predatory fishes can be a major driver of aquatic biodiversity loss. The largemouth bass Micropterus salmoides (L.) has been introduced throughout much of the world, thereafter negatively affecting native faunal communities owing to its predatory impact. To investigate the environmental factors affecting the predatory performance of invasive bass, we examined the stomach contents and habitat characteristics of bass in 15 irrigation farm ponds in northeastern Japan. The food habits of the bass populations differed among the studied ponds: the predominant prey items were fishes among bass in seven of the ponds, whereas aquatic invertebrates (mainly insects and zooplankton) were the predominant taxa in the diets of bass in the eight remaining ponds, with the onset of piscivory related to body size. The results of multivariate analysis indicated that the extent to which the bass consumed fish was positively associated with fish prey abundance and negatively associated with percentage of aquatic vegetation coverage. We suggest that the extent of aquatic vegetation coverage strongly influenced the predation efficiency of bass in the ponds. These findings might be employed to assess a pond ecosystem’s vulnerability to invasive largemouth bass and to reduce the predator’s impact on native fish species by improvements to the habitat.     

Do invasive freshwater fish species grow better when they are invasive?

A frequent assumption in invasion ecology is that invasive species have enhanced growth rates in their invasive ranges. However, invasions frequently occur in sub‐tropical and tropical environments where growth could be higher simply due to climatic conditions rather than novel habitat. In this study, a meta‐analysis of growth rates (length‐at‐age data) was completed for six invasive freshwater fish species: common carp Cyprinus carpio, largemouth bass Micropterus salmoides, brown trout Salmo trutta, brown bullhead Ictalurus nebulosus, flathead catfish Pylodictis olivaris and northern snakehead Channa argus. Significant effects of climate on growth were observed for all species except common carp, and following normalization of growth for climate effects, a range of growth responses between native and invasive populations were revealed. Two species (brown trout, flathead catfish) showed significantly increased growth rates in invasive compared to native ranges, but two species (common carp, largemouth bass) showed significantly faster growth in native ranges, and two other species (northern snakehead, brown bullhead) showed no difference in growth rates. No species showed both significantly enhanced growth rates and initial sizes in invasive compared to native ranges. Using the comparative method, countergradient growth variations were apparent for all species within their native ranges and for all but one species in invasive ranges. Invasive populations of freshwater fish do not always grow faster when invasive and future studies need to consider growth covariates (e.g. climate and countergradient growth) prior to comparing life‐history differences between invasive and native populations.     

Multiple genetic divergences and population expansions of a Mediterranean sandfly,Phlebotomus ariasi,in Europe during the Pleistocene glacial cycles

Phlebotomus ariasi is one of the two sandflies transmitting the causative agent of zoonotic leishmaniasis, Leishmania infantum, in France and Iberia, and provides a rare case study of the postglacial re-colonization of France by a Mediterranean species. Four DNA sequences were analysed—mitochondrial cytochrome b (cyt b), nuclear elongation factor-1α (EF-1α) and two anonymous nuclear loci—for 14–15 French populations and single populations from northeast Spain, northwest Spain, Portugal and Morocco. The presence of cryptic sibling species was not revealed by phylogenetic analyses and testing for reproductive isolation between sympatric populations defined by the two most divergent cyt b haplogroups. No locus was shown to be under positive directional or balancing selection and, therefore, molecular variation was explained demographically. Each nuclear locus showed shallow isolation by distance from Portugal to the French Pyrenees, but for both cyt b and EF-1α there was then a step change to the upland Massif Central, where leading-edge populations showed low diversity at all loci. Multiple genetic divergences and population expansions were detected by analyses of cyt b and dated to the Pleistocene. Endemicity of one cyt b sub-lineage suggested the presence of a refuge north of the Pyrenees during the last glacial period. Monopolization of the Massif Central by genetically differentiated populations of P. ariasi might possibly hinder the northwards spread of leishmaniasis.     

Do the effects of piscivorous largemouth bass cascade to the plankton?

Ecologists have hypothesized that an increase in the biomass of piscivorous fish in lakes will cause a decrease in populations of planktivorous fish, an increase in the size of herbivorous zooplankton and a decrease in the biomass of phytoplankton. Here we present an experimental test of whether the effects of largemouth bass (Micropterus salmoides) cascade to the planktivorous fish, zooplankton and phytoplankton of a 15-ha water storage reservoir. A pilot study indicated that the reservoir was eutrophic with dense populations of planktivorous fish dominated by threadfin shad (Dorosoma petenense). No piscovorous fish were present in the reservoir. We conducted a one-month mesocosm experiment using water and plankton from the reservoir showing that the presence of threadfin shad reduced large-sized zooplankton and increased the productivity and biomass of phytoplankton. To test whether the effects of piscivorous fish could cascade to the plankton, we assessed the effects of the addition of piscivorous largemouth bass on the planktivorous fish, zooplankton and biomass of phytoplankton of the reservoir by monitoring the reservoir during the year before and the two years after largemouth bass were stocked. In the second year after the addition of largemouth bass, the number of planktivorous fish decreased and the relative abundance of threadfin shad declined. Although the abundance of cladocerans increased after the addition of largemouth bass, the average size of zooplankton did not change. We did not detect changes in chlorophyll a, Secchi depth, or concentrations of total phosphorus and total nitrogen as a result of the addition of largemouth bass.     

Projected shifts in fish species dominance in Wisconsin lakes under climate change

Temperate lakes may contain both coolwater fish species such as walleye (Sander vitreus) and warmwater fish species such as largemouth bass (Micropterus salmoides). Recent declining walleye and increasing largemouth bass populations have raised questions regarding the future trajectories and management actions for these species. We developed a thermodynamic model of water temperatures driven by downscaled climate data and lake‐specific characteristics to estimate daily water temperature profiles for 2148 lakes in Wisconsin, US, under contemporary (1989–2014) and future (2040–2064 and 2065–2089) conditions. We correlated contemporary walleye recruitment and largemouth bass relative abundance to modeled water temperature, lake morphometry, and lake productivity, and projected lake‐specific changes in each species under future climate conditions. Walleye recruitment success was negatively related and largemouth bass abundance was positively related to water temperature degree days. Both species exhibited a threshold response at the same degree day value, albeit in opposite directions. Degree days were predicted to increase in the future, although the magnitude of increase varied among lakes, time periods, and global circulation models (GCMs). Under future conditions, we predicted a loss of walleye recruitment in 33–75% of lakes where recruitment is currently supported and a 27–60% increase in the number of lakes suitable for high largemouth bass abundance. The percentage of lakes capable of supporting abundant largemouth bass but failed walleye recruitment was predicted to increase from 58% in contemporary conditions to 86% by mid‐century and to 91% of lakes by late century, based on median projections across GCMs. Conversely, the percentage of lakes with successful walleye recruitment and low largemouth bass abundance was predicted to decline from 9% of lakes in contemporary conditions to only 1% of lakes in both future periods. Importantly, we identify up to 85 resilient lakes predicted to continue to support natural walleye recruitment. Management resources could target preserving these resilient walleye populations.     

Cytochrome b sequence divergence in the European sea bass (Dicentrarchus labrax) and phylogenetic relationships among some Perciformes species

The entire cytochrome b (cyt b ) gene has been sequenced in eight Mediterranean populations of the European sea bass, Dicentrarchus labrax and in one of D. punctatus . Our data indicate that both eastern (Greece and Egypt) and northwestern (French coast) populations of D. labrax were genetically differentiated from the Tyrrhenian ones, which were nearly indistinguishable from each other at the cyt b level. The D. labrax population from the Atlantic coast (Portugal) was genetically quite distinct from all the Mediterranean ones. These results strongly confirm the conclusions from previous studies where the same populations were screened for allozymes, random amplified polymorphic DNA (RAPD) and mitochondrial DNA (mtDNA) d -loop variation. Seven other species of Perciformes belonging to five different families (Sparidae, Serranidae, Carangidae, Pomatomidae, Sciaenidae) were sequenced to explore the usefulness of the cyt b gene for inferring evolutionary relationships at different hierarchical levels. The data were analysed together with other published cyt b sequences from Perciformes fishes. Our data suggest that the superfamily Percoidea is not monophyletic. At the family level, the Sparidae and Moronidae seem to be monophyletic. The evolutionary relationships among families were not resolved. Possible causes for this lack of resolution are discussed.     

Low temperature cardiac response to exhaustive exercise in fish with different levels of winter quiescence

We examined the cardiac responses of different fish species to anaerobic exercise at low temperatures (3 degrees C). Three species of sympatric warmwater fish with perceived differences in winter activity were used for this comparative study: the winter-quiescent largemouth bass (Micropterus salmoides); the winter-active white bass (Morone chrysops); and the intermediately winter-active black crappie (Pomoxis nigromaculatus). Perceived differences in winter activity were reflected in cardiac responses; e.g. basal cardiac values were lowest for largemouth bass, highest for white bass, and intermediate for black crappie. In addition, cardiac recovery was most rapid for white bass, slowest for largemouth bass and intermediate for black crappie. When disturbed at low temperatures, largemouth bass and black crappie elevated cardiac output principally through increases in heart rate despite substantial decreases in stroke volume. Conversely, white bass principally used stroke volume modulation to change cardiac output. The results of this study indicate that different species respond differently to exercise at low temperatures. Management strategies should recognize that such variation exists and ensure that management decisions are based upon an understanding of the low temperature exercise physiology and winter biology of the species of interest.     

Predominance of cross-predation between lateral morphs in a largemouth bass and a freshwater goby

The predator-prey relationship between largemouth bass, Micropterus salmoides, and freshwater goby, Rhinogobius spp., in Lake Biwa, Japan, was examined with respect to their morphological antisymmetry (laterality). Largemouth bass and Rhinogobius gobies exhibited lateral dimorphism in the height of the mandible and the length of the dentary, respectively. Populations of both species were composed of both left-developed and right-developed individuals. Each predation event was categorized as either cross-predation (a predator caught prey of the opposite morph) or parallel-predation (a predator caught prey of the same morph). Stomach contents analysis revealed that cross-predation events predominated over parallel-predation. Annual sampling for eight years demonstrated that in both largemouth bass and Rhinogobius gobies, the ratio of right-developed individuals in the population fluctuated temporally around 0.5. As the predominance of cross-predation was found in the relationship between the exotic largemouth bass and an endemic goby, the predominance may be caused by a kinematical interplay at each predation event.     

Mitochondrial DNA analysis of Scottish populations of Arctic charr, Salvelinus alpinus (L.)

Mitochondrial DNA analysis of a total of 82 individuals from seven Scottish populations of Arctic charr ( Salvelinus alpinus L.) using restriction fragment length polymorphism and direct nucleotide sequencing of the cytochrome b gene revealed little variation within or between populations. One of 19 restriction enzymes showed a polymorphism that was present in three of the seven populations. Only one nucleotide substitution was detected in a 288 base pair segment of the cytochrome b gene examined in 26 fish. Approximately 4% of the mitochondrial genome was surveyed with these complementary procedures.     

Maintenance of genetic differentiation across a transition zone in the sea: discordance between nuclear and cytoplasmic markers

To investigate the origin and maintenance of the genetic discontinuity between Atlantic and Mediterranean populations of the common sea bass (Dicentrarchus labrax) we analysed the genetic variation at a fragment of mitochondrial cytochrome b sequence for 18 population samples. The result were also compared with new or previously published microsatellite data. Seven mitochondrial haplotypes and an average nucleotidic divergence of 0.02 between Atlantic and Mediterranean populations that matches a Pleistocene allopatric isolation were found. The frequency variation at the cytochrome b locus was many times greater between Atlantic and Mediterranean populations (theta(C) = 0.67) than at microsatellite loci (theta(N)= 0.02). The examination of the different evolutionary forces at play suggests that a sex-biased hybrid breakdown is a likely explanation for part of the observed discrepancy between mitochondrial and nuclear loci. In addition, an analysis is made of the correlation between microsatellite loci points towards the possible existence of a hybrid zone in samples from the Alboran Sea.     

Examination of the effects of largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus) on the ecosystem attributes of lake Kawahara-oike,Nagasaki, Japan

The introduction of largemouth bass (Micropterus salmoides) and bluegill sunfish (Lepomis macrochirus) into the freshwater ecosystems of Japan has resulted in the suppression and/or replacement of native species, generating considerable concerns among resource managers. The impacts of largemouth bass and bluegill on native fauna have been examined in aquaria and isolated farm ponds, but there is limited work examining the likelihood to fundamentally modifying Japan's lakes. The objective of the present study is to examine the direct and synergistic ecological effects of largemouth bass and bluegill on the biotic communities of Lake Kawahara-oike, Nagasaki, Japan, using an ecosystem (Ecopath) modeling approach. Specifically, we examine whether the two fish species have played a critical role in shaping the trophodynamics of the lake. We attempt to shed light on the trophic interactions between largemouth bass and bluegill and subsequently evaluate to what extent these interactions facilitate their establishment at the expense of native species. We also examine how these changes propagate through the Lake Kawahara-oike food web. Our study suggests that the introduction of bluegill has induced a range of changes at multiple trophic levels. The present analysis also provides evidence that largemouth bass was unable to exert significant top-down control on the growth rates of the bluegill population. Largemouth bass and bluegill appear to prevail over the native fish species populations and can apparently coexist in large numbers in invaded lakes. Future management strategies controlling invasive species are urgently required, if the integrity of native Japanese fish communities is to be protected.     

Introgressive hybridization and species turnover in reservoirs: a case study involving endemic and invasive basses (Centrarchidae: <Emphasis Type="Italic">Micropterus</Emphasis>) in southeastern North America

Invasive species threaten native taxa with extirpation and extinction via several biological mechanisms. One such mechanism, hybridization and subsequent introgression of invasive alleles into native genomes is a serious concern, especially for taxa displaying weak reproductive barriers, as is the case for black basses. Black basses introduced outside of their native ranges thus pose elevated threats to endemic congeners, particularly in the southern United States where restricted ranges preclude refuge from introgression. The recently delineated Bartram’s bass (M. sp. cf M. coosae) is endemic to the upper regions of the Savannah River basin, throughout which anthropogenic modification, including impoundment, has been extensive. Non-native Alabama bass (M. henshalli) and smallmouth bass (M. dolomieu) have been introduced into this system on multiple occasions and now threaten Bartram’s bass via introgression. In this study we sampled four reservoirs (Jocassee, Keowee, Hartwell, and Russell) in the upper Savannah River during 2004 and 2010. Results from three codominant nuclear loci and one mitochondrial locus revealed extensive introgression between Alabama and Bartram’s bass. Results show that Alabama bass have replaced Bartram’s bass in lakes Keowee and Russell, where they were first introduced, while the frequencies of hybrids in lakes Jocassee and Hartwell are increasing. Hybridization involving Bartram’s bass with native largemouth bass and introduced smallmouth bass was detected in very low frequencies. Results highlight the importance of continual study over geographic and temporal scales to inform management and conservation of rare fishes threatened with extinction via interspecific hybridization.     

Phylogenetics of Freshwater Black Basses (Centrarchidae: Micropterus) Inferred from Restriction Endonuclease Analysis of Mitochondrial DNA

Geographic isolation and habitat specialization has aided in the evolution and genetic integrity of the micropterid bass species of North America. Members of the genus Micropterus form a close natural unit with little morphologic and meristic variation. Our goals were to measure the genetic characteristics of and distances between six black bass species by using mitochondrial DNA analysis. Mitochondrial DNA restriction fragment length polymorphisms were examined in Guadalupe bass (M. treculi), largemouth bass (M. salmoides), shoal bass (M. cataractae), smallmouth bass (M. dolomieu), spotted bass (M. punctulatus), and Suwannee bass (M. notius), using 15 restriction endonucleases. The bluegill (Lepomis macrochirus) was used as an outgroup. The phylogeny inferred from Dollo parsimony cladistic analysis concurred with published results from allozyme analyses, yet it was inconsistent with published meristic analyses. Genetic distances between species ranged from 0.0659 to 0.2145, with the largemouth and Suwannee basses showing the greatest divergence from the other black basses. The Guadalupe, smallmouth, and spotted basses were most diverged from the bluegill. The black basses diverged over a broad time frame, with estimated black bass speciation occurring during late Miocene-early Pliocene (3.30-10.73 MYA).     

Ontogenetic diet shifts and interrupted piscivoryin introduced largemouth bass (Micropterus salmoides)

The ecology of largemouth bass (Micropterus salmoides) is one of the best known for freshwater fish, though largely through studies within its native range (North America). I studied the habitat and diet of a bass population introduced into a Mediterranean lake. The bass displayed strong ontogenetic diet shifts as follows: young‐of‐the‐year <25 mm fed on microcrustaceans; fish 25–75 mm, on amphipods and insects; fish 100–225 mm, on a freshwater shrimp, small fish and insects; fish 250–300 mm, on shrimp or crayfish; and fish >300 mm, on crayfish and large fish. The diet showed several differences from most previous studies: importance of freshwater shrimp instead of insects, low piscivory, and a delay in the ontogenetic shift to piscivory. Moreover, the ontogenetic shift to piscivory was interrupted at 250–300 mm, with consumption of shrimp and crayfish. This interruption of piscivory has been largely unreported and seems a consequence of the size‐structure and species composition of the fish assemblage. A review of the literature suggests that piscivory by largemouth bass might be generally lower in populations introduced outside North America.     

Annual cycles of growth and reproduction in hatchery–reared Florida largemouth bass, Micropterus salmoides floridanus, raised on forage or pelleted diets

Annual cycles of growth and reproduction of hatchery–reared Florida largemouth bass, Micropterus salmoides floridanus , were investigated. Animals were raised on either forage (goldfish, Carassius auratus ) or a pelleted salmon feed. Male and female year–class 1 largemouth bass were sampled throughout one complete yearly cycle (January–December). A biphasic growth cycle was observed in both forage–fed and pellet–fed fish. No increase in body length or weight was observed until approximately midway through the spawning period (May), after which fish grew at a consistent rate for the remainder of the study. The reproductive cycle of forage–fed fish was characterized by a rapid increase in gonadosomatic index (GS1) between January and April, followed by a prolonged spawning period (April–July) during which GSI progressively declined. Fully regressed gonads were observed in September and October, and a resumption of gonadal recrudescence was observed between October and December. Visceral adipose deposits (expressed as mesenteric fat index; MFI) were resorbed during gonadal growth and the initial stages of the spawning period, and restored during the post–spawning phase. Fish raised on pelleted feed had growth and reproductive cycles that parallelled those of forage–fed fish, but several significant differences were observed between the two diet groups. During the growth phase of the cycle, pellet–fed largemouth bass grew significantly faster than forage–fed largemouth bass, and had significantly larger MFIs than forage–fed largemouth bass at all times of the year. Pellet–fed fish also had significantly larger GSIs than forage–fed fish. These data indicate that diet composition may be an important determinant of growth and reproductive function in this species.     

Phylogeography of the pine processionary moth Thaumetopoea wilkinsoni in the Near East

Phylogeographic structure of the eastern pine processionary moth Thaumetopoea wilkinsoni was explored in this study by means of nested clade phylogeographic analyses of COI and COII sequences of mitochondrial DNA and Bayesian estimates of divergence times. Intraspecific relationships were inferred and hypotheses tested to understand historical spread patterns and spatial distribution of genetic variation. Analyses revealed that all T. wilkinsoni sequences were structured in three clades, which were associated with two major biogeographic events, the colonization of the island of Cyprus and the separation of southwestern and southeastern Anatolia during the Pleistocene. Genetic variation in populations of T. wilkinsoni was also investigated using amplified fragment length polymorphisms and four microsatellite loci. Contrasting nuclear with mitochondrial data revealed recurrent gene flow between Cyprus and the mainland, related to the long-distance male dispersal. In addition, a reduction in genetic variability was observed at both mitochondrial and nuclear markers at the expanding boundary of the range, consistent with a recent origin of these populations, founded by few individuals expanding from nearby localities. In contrast, several populations fixed for one single mitochondrial haplotype showed no reduction in nuclear variability, a pattern that can be explained by recurrent male gene flow or selective sweeps at the mitochondrial level. The use of both mitochondrial and nuclear markers was essential in understanding the spread patterns and the population genetic structure of T. wilkinsoni, and is recommended to study colonizing species characterized by sex-biased dispersal.