Prevalence and distribution of airborne and waterborne fungi and actinomycetes in the Nile river

The objective of this research was to investigate the prevalence and distribution of airborne and waterborne fungi and actinomycetes along the main stream of the Nile river during April to July, 2005. Air and water samples were collected at eight sites within a ~50 km stretch of the river. The distribution and prevalence of air and water microorganisms varied with location. The highest counts of airborne fungi (516 CFU/p/h) and actinomycetes (222 CFU/p/h) were detected at suburban sites near cultivated areas. However, the highest counts of waterborne fungi (56.4 CFU/ml) and actinomycetes (15.4 CFU/ml) were detected at Al-Galaa (city centre) and Kafr-El-elwe (south Cairo), respectively. A total of 1,816 fungal colonies (943 isolates from air and 873 from water samples) belonging to 27 genera were identified. Aspergillus, Alternaria, Cladosporium, and yeasts were the predominant fungal types in both air and water environments. Dreschlera, Emericella, Nigrospora, Spicaria, Stachybotrys, and Verticillium were only detected in the air, and Epicoccum, Philaphora, Phoma and Ulocladium were only detected in the water. Mycotoxin-producing fungi represented by Aspergillus flavus, Aspergillus parasiticus, Penicillium, Fusarium, and Trichoderma were found in the air and water environments. Significant differences (P ≤ 0.05) were found between fungal populations in air and water at different sampling sites. No significant differences (P ≥ 0.05) were found between waterborne actinomycetes. Sampling location, human activity, and pollution load are the main factors affecting the variability and biodiversity of microorganisms in different microenvironments.     

Interactions between fungi,bacteria and beech leaves in a stream microcosm

Summary Immigration and colonization of isolates of naturally occurring stream bacteria and hyphomycetes on beech leaves were studied in a laboratory stream microcosm. Fungal spores were more successful immigrants, especially on new leaves, than bacteria, which were more repelled than attracted by the substrate. Fewer bacteria immigrated to older leaves than to new, and bacteria multiplied faster in water than on leaves. Fungi and bacteria showed synergistic relationships so that each group grew significantly faster in presence of the other group. If one considers, differences in immigration, colonization and synergism patterns, fungal mycelia doubled about 10 times faster than bacterial cells which might explain the dominance of fungi usually found on leaves in early decay. The individual fungal species could be assigned to one of three colonization groups; one of fugitive species, preceding a second group of species that grew from rarity to dominance, and a third group of very slow colonizers. The leachate was fractionated in different molecular size classes by gel chromatography, and the fraction around 2500D in the new leaf leachate was associated with a high concentration of polyphenols. High-pressure liquid chromatography (HPLC) and gas chromatography-mass spectrometry (GC-MS) revealed the presence of 16 phenolic acids in the new leaf leachate at concentrations ranging from < 1 to 640 g l^–1. All fungi except the species with the slowest growth rate grew faster on leachate with the fraction around 2500D removed, and the density of bacteria was significantly reduced when pure stream water was supplemented with compounds from the same fraction.     

Uniform categorization of biocommunication in bacteria, fungi and plants

This article describes a coherent biocommunication categorization for the kingdoms of bacteria, fungi and plants. The investigation further shows that, besides biotic sign use in trans-, inter- and intraorganismic communication processes, a common trait is interpretation of abiotic influences as indicators to generate an appropriate adaptive behaviour. Far from being mechanistic interactions, communication processes within organisms and between organisms are sign-mediated interactions. Sign-mediated interactions are the precondition for every cooperation and coordination between at least two biological agents such as cells, tissues, organs and organisms. Signs of biocommunicative processes are chemical molecules in most cases. The signs that are used in a great variety of signaling processes follow syntactic (combinatorial), pragmatic (context-dependent) and semantic (content-specific) rules. These three levels of semiotic rules are helpful tools to investigate communication processes throughout all organismic kingdoms. It is not the aim to present the latest empirical data concerning communication in these three kingdoms but to present a unifying perspective that is able to interconnect transdisciplinary research on bacteria, fungi and plants.     

Feeding trials ofAphelenchus avenae on soil bacteria and actinomycetes

Summary Aphelenchus avenae and various unidentified bacteria and actinomycetes were cultured from soil samples taken from a pine-forest and a wheat-field. The nematode failed to reproduce in significant numbers on cultures of these micro-organisms and was apparently unable to utilize them as food sources.     

混合培养真菌和细菌对废水的生物去氮作用

Denitrificationis a biological processin which nitrateand/or nitrite is reduced to gaseous nitrogen,dinitrogen(N2)or nitrous oxide(N2O)while carbon dioxide is thesecond gaseous product of the process.This is one of themain mechanisms of the global nitrogen cycle,and playsanimportant role as the reverse reaction of nitrogen fixa-tion in maintaining global environmental homeostasis[1].Denitrification has beenlongthought to be a unique char-acteristic of prokaryotes[2,3].Anumber of bacteria(such…     

Denitrification by the mix-culturing of fungi and bacteria with shell

Denitrification by pure and mixed culture of Fusarium oxysporum and Pseudomonas stutzeri in different mineral medium and in synthetic wastewater were examined. The results obtained revealed that a rapid N2 evolution by F. oxysporum and P. stutzeri in mineral medium and synthetic wastewater was observed. In co-cultures of F. oxysporum and P. stutzeri, N2O produced by F. oxysporum was rapidly consumed by P. stutzeri. This indicated that mixed culture of F. oxysporum and P. stutzeri could be used for efficient nitrate and nitrite removal. Using synthetic wastewater, about 87% of nitrate was reduced by co-denitrification of F. oxysporum and P. stutzeri after incubation for 6 days. In the further denitrification tests, the interaction of shell and mixed culture of F. oxysporum and P. stutzeri was investigated. The dinitrogen was rapidly evolved (442.48 micromol N2 produced from 1.0 mmol of NO3(-) in 36 h). These results clearly showed that shell provide a suitable microenvironment for P. stutzeri, which is beneficial to the denitrification.     

Copper resistance mechanisms in bacteria and fungi

Abstract: Copper is both an essential micronutrient and a toxic heavy metal for most living cells. The presence of high concentrations of cupric ions in the environment promotes the selection of microorganisms possessing genetic determinants for copper resistance. Several examples of chromosomal and plasmid copper-resistance systems in bacteria have been reported, and the mechanisms of resistance have started to be understood at the molecular level. Bacterial mechanisms of copper resistance are related to reduced copper transport, enhanced effiux of cupric ions, or copper complexation by cell components. Copper tolerance in fungi has also been ascribed to diverse mechanisms involving trapping of the metal by cell-wall components, altered uptake of copper, extracellular chelation or precipitation by secreted metabolites, and intracellular complexing by metallothioneins and phytochelatins; only the metallothionein chelation mechanism has been approached with molecular detail.     

病原真菌和细菌毒性基因的分离和鉴别

本文讨论最新发展起来的病原真菌和细菌毒性基因的分离和鉴别原理和方法,涉及到基因表达分析法、基因转移方法、基因组比较法、诱变方法及其诱变子的筛选鉴定。着重讨论了这些方法的优点和局限性,评估了标记诱变法（ＳＴＭ）和限制酶介导的整合法（ＲＥＭＩ）两者相互结合在病原真菌毒性基因克隆中的应用潜力。     

Comparison of microbial numbers in soils by using various culture media and temperatures

The influence of different media and incubation temperatures on the quantification of microbial populations in sorghum, eucalyptus and forest soils was evaluated. Microbial growth was compared by using complex (tryptone soybean agar, TSA, casein-starch, CS, and Martin) and saline (Thorton, M3, Czapeck) media and incubation temperatures of 25 and 30 degrees C. Higher numbers of total bacterial and fungal colony-forming units (CFU) were observed in sorghum soils, and of spore-forming and Gram-negative bacteria in forest soils than other soils. Actinomycetes counts were highest in forest soil when using CS medium at 30 degrees C and in sorghum soil at 25 degrees C in M3 medium. Microorganism counts were dependent on the media and incubation temperatures. The counts at temperatures of 30 degrees C were significantly higher than at 25 degrees C. Microbial quantification was best when using TSA medium for total and spore-forming bacteria, Thorton for Gram-negative bacteria, M3 for actinomycetes, and Martin for fungi.     

Effect of soil fumigation with vapam on the dynamics of soil microflora and their related biochemical activity

Summary Fungal propagules, in general, were drastically reduced in vapam amended soils. The toxicant from 250 to 1000 ppm was lethal toFusarium spp. Only in the early part of the experiment, higher concentrations of vapam appreciably reduced the population of bacteria and actinomycetes, though later on, their population gradually increased. The numbers of Azotobacter in soil amended with 125, 250 and 500 ppm did not alter appreciably, but their population in treated soils increased over the check on the 45th day. All concentrations of vapam lowered the population of Rhizobia.Vapam produced inhibitory effect on soil nitrification, inhibition period varying with the amount of chemical applied initially. Vapam from 125 to 500 ppm stimulated the ammonification process, while its higher concentration (1000 ppm) produced detrimental effect for 15 days. The toxicant increased CO₂ production for first 32 days.Results suggest that extraordinary success of vapam in controlling soil-borne infections of Pythium and Rhizoctonia was not entirely due to its fungicidal action. Partly it was also due to an increase in the population of known antagonists of these pathogens in fumigated soils.     

Inhibition of fungi,actinomycetes and bacteria by Stachybotrys atra

The effect ofStachybotrys atra on fungi, actinomycetes and bacteria was studied in agar culture. Of the 27 genera and 52 species of fungi, 6 species of actinomycetes and 5 genera and 10 species of bacteria tested,S. atra was found to inhibit 95.7 % fungi, all the actinomycetes and 83.3 % of bacteria.Aspergillus ustus, 2 unidentified species ofFusarium, Rhizobium trifolii andPseudomonas spp. were however not inhibited. In experiments in soil,S. atra inhibited the growth ofTrichoderma viride. S atra was ineffective whereT. viride andS. atra were inoculated simultaneously or whereT. viride was added 7 days earlier. Besides,S. atra was not found to controlMacrophomina phaseoli infection on cotton. Soil culture ofS. atra showed phytotoxic effect on cotton seedlings.S. atra produced a dark brown to black thermostable toxic metabolite in the medium. The culture filtrate retarded the growth ofM. phaseoli in agar culture. Despite the importance ofS. atra as a fungistatic agent with wide antimicrobial spectrum, the use ofS. atra as a protectant against plant pathogens seems to be limited because of its phytotoxicity on cotton.     

Diversity of fungi, bacteria, and actinomycetes on leaves decomposing in a stream

Although fungi, bacteria, and specific bacterial taxa, such as the actinomycetes, have been studied extensively in various habitats, few studies have examined them simultaneously, especially on decomposing leaves in streams. In this study, sugar maple and white oak leaves were incubated in a stream in northeastern Ohio for 181 days during which samples were collected at regular intervals. Following DNA extraction, PCR-denaturing gradient gel electrophoresis (DGGE) was performed using fungus-, bacterium-, and actinomycete-specific primers. In addition, fungal and bacterial biomass was estimated. Fungal biomass differed on different days but not between leaves of the two species and was always greater than bacterial biomass. There were significant differences in bacterial biomass through time and between leaf types on some days. Generally, on the basis of DGGE, few differences in community structure were found for different leaf types. However, the ribotype richness of fungi was significantly greater than those of the bacteria and actinomycetes, which were similar to each other. Ribotype richness decreased toward the end of the study for each group except bacteria. Lack of differences between the two leaf types suggests that the microorganisms colonizing the leaf biofilm were primarily generalists that could exploit the resources of the leaves of either species equally well. Thus, we conclude that factors, such as the ecological role of the taxa (generalists versus specialists), stage of decay, and time of exposure, appeared to be more important determinants of microbial community structure than leaf quality.     

Interhemispheric transport of viable fungi and bacteria from Africa to the Caribbean with soil dust

Daily aerosol samples collected in trade winds at Barbados, West Indies, throughout 1996–1997 yielded significant concentrations of viable (culture-forming) bacteria and fungi only when African dust was present. Air masses from the North Atlantic, North America, and Europe yielded no cultivable organisms. The strong association of cultivable organisms with African dust suggests various factors that might be relevant to viability. Although we did not specifically look for pathogens, these same mechanisms could protect them as well. Our results suggest that arid regions could be an important source for the long-range transport of viable microorganisms. The transport of microorganisms to Barbados follows a clear meteorological and seasonal pattern, which suggests that it should be possible to model the transport process and to predict events. Microorganism and dust concentrations were unusually great in 1997, possibly in response to the strong El Niño. This suggests that the long-range transport of microorganisms might be particularly responsive to climate variability in general.     

Odorous composting gas abatement and microbial community diversity in a biotrickling filter

This study aimed to remove complex odorous gas produced from composting using a biotrickling filter and to observe the temporal and special distributions of bacteria, fungi, and actinomycetes. The removal efficiencies of the total volatile organic compounds (TVOC) were 26.1% and 81.5% before and after inoculation of volatile organic compounds (VOC)-degrading microbes, respectively. Especially trimethylamine was 100% degraded. In the first and second composting period, the odor reduction efficiencies showed average values of 86.2% and 94.5%, respectively. The total average of the bacteria in the biofilm was 2.06 × 10⁹ CFU/g TS, which was 22.2% higher than that of the control (the culture of microbes prior to the inoculation of VOC-degrading microbes). The bacteria may have played a predominant role in odor removal. The total average of the fungi in the biofilm was 9.64 × 10⁶ CFU/g TS, which was only 6.40% of the control. The total average of the actinomycetes in the biofilm was 5.10 × 10⁵ CFU/g TS, which was 5.63 times higher than that of the control. Findings from this study showed that usage of a biotrickling filter is a promising process for the treatment of complex odorous gas.     

Size fractions of dust and amount of associated metals on leaf surface and inner wax of 15 plant species at Beijing roadside

To provide more insight into the removal ability of urban air dust and associated metals by plant leaves, and thus guide urban green planning to improve air quality, 15 plant species leaves collected from Beijing roadside were analyzed for size fractions of leaf surface dust (SD) and inner wax dust (WD). Seven associated metals Cd, Cr, Cu, Fe, Mn, Pb and Zn were also measured. Metal Accumulation Index (MAI) was calculated for different species leaves at various dust sizes and soluble forms, respectively. Cluster analysis was used for the plant species and correlations between dust and metal concentrations and for inter-metal concentrations were calculated for both surface and inner wax dust. Mean leaf total dust TD (SD?+?WD), SD and WD were measured as 1159, 817 and 342?mg m^?2, respectively, with the highest values observed all in Euonymus japonicus. Most species leaves collected larger ratios of SD than WD except Salix babylonica and Robinia pseudoacacia. While SD was presented at all particle size fractions for all plants, nearly all species leaves collected higher proportions of WD >10?µm. Mean metal levels of leaf TD of all species ranged from high to low as Fe?>?Cr?>?Zn?>?Pb?>?Cu?>?Mn?>?Cd, but with different orders for individual species. Metals were observed in all sizes of SD/WD, although the size distributions were various for certain metals. Intercorrelations of metal concentrations in leaf SD/WD were positively significant except Pb, which may have different emission sources. Species Prunus cerasifera f. atropurpurea, Syringa oblata, Malus micromalu, Koelreuteria paniculata and Robinia pseudoacacia may possess better overall metal collection ability due to their relatively higher MAI values, but species Euonymus japonicus, Malus micromalu, Ligustrum x vicaryi and Koelreuteria paniculata were identified as the best choices in removing air dust based on cluster analysis and suggested to be planted at heavy trafficked road site for air quality improvement.     

Airborne bacteria, fungi, and endotoxin levels in residential microenvironments: a case study

Limited data are currently available on the concentrations of airborne bacteria, fungi, and endotoxins in indoor environments. The levels of aerial bacteria and fungi were measured at several microenvironments within a well-ventilated residential apartment in Singapore including the living room, kitchen, bedroom, toilet, and at a workplace environment by sampling indoor air onto culture medium plates using the 6-stage Andersen sampler. Total microbial counts were determined by collecting the air samples in water with the Andersen sampler, staining the resultant extracts with a fluorescent dye, acridine orange, and counting the microbes using a fluorescent microscope. The levels of airborne endotoxins were also determined by sampling the airborne microorganisms onto 0.4?μm polycarbonate membrane filter using the MiniVol sampler at 5?l/min for 20?h with a PM_2.5 cut-off device. The aerial bacterial and fungal concentrations were found to be in the ranges of 117–2,873?CFU/m³ and 160–1,897?CFU/m³, respectively. The total microbial levels ranged from 49,000 to 218,000?microbes/m³. The predominant fungi occurring in the apartment were Aspergillus and Penicillium while the predominant bacterial strains appeared to be Staphylococcus and Micrococcus. The average indoor endotoxin level was detectable in the range of 6–39?EU/m³. The amount of ventilation and the types of human activities carried out in the indoor environment appeared to be important factors affecting the level of these airborne biological contaminants.     

Studies on bacterioplankton and inhibitory strains of aquatic actinomycetes in Lake Bardawil,Egypt

Lake Bardawil represents a hyper-saline shallow (50–600 cm deep) water basin lying along the northern shore of Sinai. Surface water samples were collected monthly from this lake for physico-chemical and microbiological analysis. Seasonal variations in the averages of temperature, pH and transparency of the tested water samples were determined. Seasonal averages of the total bacterial counts at 22 and 37°C, biovolumes of cells and bacterial biomass of the lake’s water at different regions were also determined. In addition to the gram-negative pathogen, Edwardsiella tarda, faecal contamination indicators, total coliforms, faecal coliforms and faecal streptococci were counted in the lake’s water samples from various regions during different seasons. The number of actinomycetes per milliliter of the lake’s water samples were determined. Fifteen actinomycetes were isolated and screened for their antibacterial activity against E. coli and pathogenic E. tarda isolated from the same water samples. Five isolates of these actinomycetes showed antibacterial activities and nine of them were identified as Streptomyces. The most antibacterially active isolate was subjected to morphological, physiological and biochemical studies and identified as Streptomyces viridiviolaceus. The identified organism exhibited antimicrobial activities against the main indicator of water pollution, E. coli, pathogenic E. tarda, Corynebacterium michiganese B-33, Pseudomonas solanacearum B-3212 and Staphylococcus. No antimicrobial activities were recorded against Bacillus cereus, Micrococcus, Mycobacterium, Aspergillus niger, Candida albicans, C. tropicalis or Rhizopus nigricans.     

Transport of microorganisms to Israel during Saharan dust events

Dust storms are serious meteorological events that affect the East Mediterranean region, primarily during the spring season. The physical and chemical nature of dust storms, their origin, and the meteorological conditions leading to the generation of storms have been fully documented, but knowledge on their biological content is almost nonexistent. Four dust events that occurred in the period 2004–2005 were sampled in Haifa, Israel, an urban area on the East Mediterranean coast, for biological characterization. Samples were taken before or after (depending on the meteorological conditions) as well as during the dust events. Dust particles were collected as two size fractions using a dichotomous sampler, and their elemental content was determined using X-ray fluorescence analyses. Airborne bacteria and fungi were collected with the Six Stage Andersen Viable Impactor. Fungi were identified by optical microscopy. Compared to adjacent clear days, there was an increase in the concentration of both atmospheric particles and elements of geological and marine origin during the dust events. The concentration of airborne microorganisms during the dust events was also higher, and the fungal population content was affected. On a winter clear day the abundant airborne fungi were Paecilomyces variotii, Penicillium glabrum, and Alternaria alternata. On a spring clear day, the persisting airborne fungi were Alternaria alternata, Geotrichum candidum, Penicillium chrysogenum, and P. glabrum. However, during two dust events the fungal population was dominated by Alternaria alternata, Aspergillus fumigatus, A. niger, A. thomii, Cladosporium cladosporioides, Penicillium chrysogenum, and P. griseoroseum. This study suggests that Saharan and other desert dust events in the East Mediterranean have a significant effect on the airborne microbial populations, which might impact on health, agriculture, and ecology.