巨细胞病毒感染的治疗研究进展

人巨细胞病毒(HCMV)为DNA双螺旋病毒,属疱疹病毒科β亚科,是疱疹病毒科中基因组最大的病毒。HCMV通常呈隐性感染,正常人感染HCMV并无临床症状,一旦人体的免疫机能发生变化(如肿瘤、AIDS、妊娠、新生儿和器官移植),HCMV即从潜伏态转化为原发性或继发性的增殖感染,引起严重的临床症状甚至死亡。因此,HCMV的预防和治疗越来越受到关注,就CMV感染的预防及治疗方法进行了综述。     

疱疹病毒UL7基因研究进展

疱疹病毒目(Herpesvirales)由疱疹病毒科(Herpesviridae)、鱼类疱疹病毒科(Alloherpesvi-ridae)和贝类疱疹病毒科(Malacoherpesviridae)组成[1]。该病毒为线性双链DNA且外观近似为球形。其中,疱疹病毒科根据其生物学特性如宿主范围、复制周期长短、感染所致的细胞病理学变化以及     

疱疹病毒UL7基因研究进展

疱疹病毒目(Herpesvirales)由疱疹病毒科(Herpesviridae)、鱼类疱疹病毒科(Alloherpesvi-ridae)和贝类疱疹病毒科(Malacoherpesviridae)组成[1]。该病毒为线性双链DNA且外观近似为球形。其中,疱疹病毒科根据其生物学特性如宿主范围、复制周期长短、感染所致的细胞病理学变化以及     

水痘-带状疱疹病毒分离和鉴定

本文报告了用7份水痘或带状疱疹病人的皮肤病变水泡液,在人胚肺二倍体细胞(2BS)中培养传代,分离到7株病毒分离物,第一株是由带状疱疹病例分离到的,经细胞病变、核内包涵体和电镜形态学观察,认为此分离物属于疱疹病毒科成员;经血清学鉴定,证实为水痘-带状疱疹病毒(VZV),其宿主范围与疱疹病毒(HSV)不同,余6株分离物经ELISA、IFA及CF血清学试验鉴定均为VZV。     

Responses of freshwater ecosystems to global change: research progress and outlook

全球变化已经通过提高水温、改变降水格局和水流状况、促进物种入侵、增加极端事件, 对不同的淡水生态系统造成严重的威胁。该文将全球变化背景下淡水生态学的主要研究内容归纳为: (1)全球变化各要素对个体、种群、群落及至生态系统水平的影响; (2)全球变化过程中生态系统生物地球化学循环的改变; (3)淡水生态系统对全球变化的适应对策。最近10-15年淡水生态系统与全球变化研究快速发展, 取得的重要突破有: (1)阐明淡水生态系统结构与功能对全球气候变化尤其是水温升高的响应过程与机制; (2)揭示淡水生态系统(湿地、湖泊、河流等)是全球碳循环的重要组成部分, 在全球变化因素的影响下呈现有机碳埋藏减少和矿化速率提高。今后的研究中, 需要进一步加强对淡水生态系统全要素的系统观测与整合; 开展以“河流”为介质耦合多系统的碳输运和转化过程研究; 强化基础理论研究揭示淡水生态系统对全球变化的适应机制。     

淡水生态系统对全球变化的响应:研究进展与展望

全球变化已经通过提高水温、改变降水格局和水流状况、促进物种入侵、增加极端事件,对不同的淡水生态系统造成严重的威胁。该文将全球变化背景下淡水生态学的主要研究内容归纳为:(1)全球变化各要素对个体、种群、群落及至生态系统水平的影响;(2)全球变化过程中生态系统生物地球化学循环的改变;(3)淡水生态系统对全球变化的适应对策。最近10–15年淡水生态系统与全球变化研究快速发展,取得的重要突破有:(1)阐明淡水生态系统结构与功能对全球气候变化尤其是水温升高的响应过程与机制;(2)揭示淡水生态系统(湿地、湖泊、河流等)是全球碳循环的重要组成部分,在全球变化因素的影响下呈现有机碳埋藏减少和矿化速率提高。今后的研究中,需要进一步加强对淡水生态系统全要素的系统观测与整合;开展以"河流"为介质耦合多系统的碳输运和转化过程研究;强化基础理论研究揭示淡水生态系统对全球变化的适应机制。     

患病中国大鲵中分离到一株虹彩病毒及其特性的研究

从陕西某大鲵养殖场患病的大鲵体内分离到一株病毒。患病大鲵以体表溃疡,特别是肢体远端溃烂为主要临床特征。该病毒于10℃~30℃能在BF-2(Caudal trunk cells of blue-gillfry)、CO(Gorad cells of grass carp)、CHSE(Embryo cells of Chinook salmon)、FHM(cells of fathed minnow)等细胞中较好地增殖,最适生长温度为25℃~30℃。病毒对氯仿、热、pH3、pH10敏感,DNA抑制剂5-氟-2′-脱氧尿苷(5-fluro-2-′deoxyuridine,FUDR)能抑制病毒在细胞中的增殖,提示该病毒是有囊膜的DNA病毒。经电镜观察,在感染了病毒的细胞切片中可见到大量直径约130~150 nm有囊膜的六角形病毒颗粒成晶格排列在细胞质里,病毒呈典型的虹彩病毒形态。抽提病毒核酸后进行PCR扩增,用已知蛙病毒主要衣壳蛋白(MCP)基因的保守序列设计的引物能扩增出431bp的片段。扩增的片段测序后,和已知的几种蛙病毒属成员的主要衣壳蛋白基因中的相应片段进行比对,相似性在96%以上。血清学试验结果显示该病毒和IPNV(Infectious pancreatic necrosis virus,IPNV)、GCRV(Grass carp reovirus,GCRV)、SVCV(Spring viraemia of carp virus,SVCV)I、HNV(Infectious hematopoietic necrosis virus,IHNV)在血清学上没有相关性。以上结果提示该病毒可能是虹彩病毒科蛙病毒属的成员,暂时命名为大鲵虹彩病毒(Andrias davidianus iridovirus,ADIV)。该病毒与大鲵发病的关系有待进一步研究。     

两株水生呼肠孤病毒部分特性的比较

水生呼肠孤病毒为感染水生动物的一类病原体,隶属于呼肠孤病毒科新建水生呼肠孤病毒属。草鱼呼肠孤病毒(Grass carp reovirus,GCRV)是引起中国南方淡水养殖草鱼暴发性出血病病原,鲅鱼呼肠孤病毒(Threadfin reovirus,TFV)是引起海水养殖鲅鱼病毒病病原。本研究将GCRV与新加坡TFV分离株进行了部分特性比较研究。结果表明,GCRV与TFV均能感染CIK细胞,但对其它鱼类细胞系的敏感性有所差异。此外,凝胶电泳与逆转录聚合酶链式扩增显示,GCRV与TFV核酸属不同的基因型。在多肽特性上,证实了GCRV的5条主要结构多肽具有与。FTV及水生呼肠孤病毒相似的特性。Westem blot检测显示,草鱼呼肠孤病毒与TFV结构蛋白拥有部分相同的抗原决定簇。     

基于宏病毒组学技术挖掘猪腹泻粪便的病毒群落组成

为系统鉴定现阶段上海地区仔猪腹泻样品中的病毒群落组成,本研究利用宏病毒组学技术对临床采集的猪腹泻粪便进行了宏病毒高通量测序。结果显示,测序获得了1,676,726个RNAcontig和95,111个DNAcontig,RNA病毒和DNA病毒序列分别占比38.58%和3.10%。其中星状病毒科、杯状病毒科和小RNA病毒科是病毒总群落中占比最高的前3个科。虽然DNA病毒在病毒总群落中的占比较低,但其单组分环状DNA (CRESS-DNA)病毒种类丰富多样,包含有18种CRESS-DNA病毒。经基因组序列深度拼接,共获得了46条病毒全基因组序列,包括2株猪星状病毒和3株类似星状病毒、2株札幌病毒、16株小双节RNA病毒和23株CRESS-DNA病毒。其中1株札幌病毒归属于GII/3亚型,与人札幌病毒亲缘性较近。16株小双节RNA病毒中有4株归属于GGI亚型,其余12株归属于GGII亚型。23株CRESS-DNA病毒中有1株归属于类双生病毒科、12株CRESS-DNA病毒归属于小环状DNA病毒科,另外10株CRESS-DNA病毒未分类。本研究揭示现阶段猪腹泻粪便中以RNA病毒为主导,且存在宿主...     

两株水生呼肠孤病毒部分特性的比较

水生呼肠孤病毒为感染水生动物的一类病原体,隶属于呼肠孤病毒科新建水生呼肠孤病毒属.草鱼呼肠孤病毒(Grass carp reovirus,GCRV)是引起中国南方淡水养殖草鱼暴发性出血病病原,鮁鱼呼肠孤病毒(Threadfin reovirus,TFV)是引起海水养殖鮁鱼病毒病病原.本研究将GCRV与新加坡TFV分离株进行了部分特性比较研究.结果表明,GCRV与TFV均能感染CIK细胞,但对其它鱼类细胞系的敏感性有所差异.此外,凝胶电泳与逆转录聚合酶链式扩增显示,GCRV与TFV核酸属不同的基因型.在多肽特性上,证实了GCRV的5条主要结构多肽具有与FTV及水生呼肠孤病毒相似的特性.Western blot 检测显示,草鱼呼肠孤病毒与TFV结构蛋白拥有部分相同的抗原决定簇.     

Diversity,evolutionary contribution and ecological roles of aquatic viruses

Aquatic viruses include infected viruses in aquatic animals, plants and microorganisms, and free-floating viruses(virioplankton)in water environments. In the last three decades, a huge number of aquatic viruses, especially diverse free-floating viruses,including cyanophages, phycoviruses, archaea viruses, giant viruses, and even virophages, have been identified by virological experiments and metagenomic analyses. Based on a comprehensive introduction of aquatic virus classification and their morphological and genetic diversity, here, we summarize and outline main virus species, their evolutionary contribution to aquatic communities through horizontal gene transfer, and their ecological roles for cyanobacterial bloom termination and global biogeochemical cycling in freshwater and marine ecosystems. Thereby, some novel insights of aquatic viruses and virus-host interactions, especially their evolutionary contribution and ecological rolesin diverse aquatic communities and ecosystems, are highlighted in this review.     

Environmental DNA (eDNA): Powerful technique for biodiversity conservation

Environmental DNA metabarcoding is a non-invasive method for discovering and identifying rare and endangered species in a variety of ecosystems, including aquatic environments, based on the retrieval of genetic traces emitted into the environment by animals. Environmental (e) DNA research has grown in popularity over the last decade as a result of a rise in the number of studies that employ DNA taken from the environment, particularly in freshwater and marine ecosystems. In terms of detecting diversity patterns, we may claim that DNA retrieved from the environment (eDNA) is altering the game. For resource management in fisheries, information on species composition and biomass/abundance of commercially and noncommercially harvested species is critical. The eDNA is a truly non-invasive method that inflicts no damage on the species or habitats under study even during sampling, the eDNA technique never harms any ecosystems or threatened species. This novel molecular method never affects any endangered species or ecosystem during sampling. Environmental DNA analysis has become more widely accepted and is used in the detection of the presence and absence of aquatic macrofauna, such as freshwater and marine fish. This review study may aid researchers in better understanding the current state of eDNA technology. Despite the fact that various scientists have used eDNA to investigate the worldwide biodiversity of aquatic environments, no one in India is focusing on this new technology. We conclude that the eDNA technique has the potential to become a next-generation tool for biodiversity research and aquatic ecosystem conservation.     

Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup

Halophage CW02 infects a Salinivibrio costicola-like bacterium, SA50, isolated from the Great Salt Lake. Following isolation, cultivation, and purification, CW02 was characterized by DNA sequencing, mass spectrometry, and electron microscopy. A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, including marine and freshwater ecosystems. CW02 has morphological similarities to viruses of the Podoviridae family. The structure of CW02, solved by cryogenic electron microscopy and three-dimensional reconstruction, enabled the fitting of a portion of the bacteriophage HK97 capsid protein into CW02 capsid density, thereby providing additional evidence that capsid proteins of tailed double-stranded DNA phages have a conserved fold. The CW02 capsid consists of bacteriophage lambda gpD-like densities that likely contribute to particle stability. Turret-like densities were found on icosahedral vertices and may represent a unique adaptation similar to what has been seen in other extremophilic viruses that infect archaea, such as Sulfolobus turreted icosahedral virus and halophage SH1.     

Role of essential fatty acids in trophometabolic interactions in the freshwater ecosystems (a review)

Polyunsaturated fatty acids (PUFA) of omega3 family are of crucial physiological importance for the most animals and they are an essential and deficient component of human nutrition. These compounds are most effectively synthesized by some groups of algae, hence, aquatic ecosystems are considered to be the main source of these PUFA for human nutrition. Factors controlling the content and distribution of omega3 PUFA in freshwater organisms of basic trophic levels and determined PUFA final production in freshwater ecosystems are considered in the review. PUFA biosynthesis is known to be tightly related to basic fatty acid metabolic pathways. Hence, fatty composition and the PUFA content of major freshwater hydrobiont groups, including bacteria, algae, invertebrates and vertebrates, and environmental and population age effects are described. The peculiarities of PUFA transfer between organisms of various trophic levels are discussed. The essential omega3 PUFA is one of the important parameter of food quality of aquatic consumers and they can determine the rate of energy and matter transfer between producers and primary consumers and, as a result, in a whole freshwater food chain. Analysis of PUFA content and its regulation in biomass of various fish populations indicates that freshwater ecosystems are of the same value in respect of PUFA sources as marine ecosystems. Despite the great practical importance, the studies focused on production and whole pools of omega3 PUFA in different freshwater ecosystems are still scarce and need to be continued.     

淡水水生生态系统温室气体排放的主要途径及影响因素研究进展

淡水水生生态系统是全球陆域生态系统的重要组成部分,近年来,关于淡水水生生态系统温室气体排放的研究日益增多。基于国内外目前对湖泊、河流、水库及浅水池塘等淡水生态系统开展的最新研究成果,总结分析了淡水水生生态系统温室气体排放的3个主要途径及相应观测方法。气泡排放的观测方法有倒置漏斗法、开放式动态箱法和超声探测技术;植物传输的观测方法有密闭箱法和植株切割法;扩散途径的观测方法有静态浮箱法、模型估算法/梯度法、微气象学法、TDLAS吸收光谱法等。从物理因素、化学因素、生物因素、水动力因素和人类活动等角度,深入探讨了淡水水生生态系统温室气体排放通量的影响因素。最后根据当前研究中存在的不足,对今后的研究方向提出了建议,以期为我国进一步深入开展相关研究提供借鉴。     

Integrative freshwater ecology and biodiversity conservation

Freshwater ecosystems provide goods and services of critical importance to human societies, yet they are among the most heavily altered ecosystems with an overproportional loss of biodiversity. Major threats to freshwater biodiversity include overexploitation, water pollution, fragmentation, destruction or degradation of habitat, and invasions by non-native species. Alterations of natural flow regimes by man-made dams, land-use changes, river impoundments, and water abstraction often have profound impacts on lotic communities. An understanding of the functional interactions and processes in freshwater ecosystems presents a major challenge for scientists, but is crucial for effective and sustainable restoration. Most conservation approaches to date have considered single species or single level strategies. In contrast, the concept of ‘Integrative Freshwater Ecology and Biodiversity Conservation’ (IFEBC) proposed herein addresses the interactions between abiotic and biotic factors on different levels of organization qualitatively and quantitatively. It consequently results in a more holistic understanding of biodiversity functioning and management. Core questions include modeling of the processes in aquatic key habitats and their functionality based on the identification and quantification of factors which control the spatial and temporal distribution of biodiversity and productivity in aquatic ecosystems. The context and importance of research into IFEBC is illustrated using case studies from three major areas of research: (i) aquatic habitat quality and restoration ecology, (ii) the genetic and evolutionary potential of aquatic species, and (iii) the detection of stress and toxic effects in aquatic ecosystems using biomarkers. In conclusion, our understanding of the functioning of aquatic ecosystems and conservation management can greatly benefit from the methodological combination of molecular and ecological tools.     

The impact of accelerating land-use change on the N-Cycle of tropical aquatic ecosystems: Current conditions and projected changes

Published data and analyses from temperate and tropical aquatic systems are used to summarize knowledge about the potential impact of land-use alteration on the nitrogen biogeochemistry of tropical aquatic ecosystems, identify important patterns and recommend key needs for research. The tropical N-cycle is traced from pre-disturbance conditions through the phases of disturbance, highlighting major differences between tropical and temperate systems that might influence development strategies in the tropics. Analyses suggest that tropical freshwaters are more frequently N-limited than temperate zones, while tropical marine systems may show more frequent P limitation. These analyses indicate that disturbances to pristine tropical lands will lead to greatly increased primary production in freshwaters and large changes in tropical freshwater communities. Increased freshwater nutrient flux will also lead to an expansion of the high production, N- and light-limited zones around river deltas, a switch from P- to N-limitation in calcareous marine systems, with large changes in the community composition of fragile mangrove and reef systems. Key information gaps are highlighted, including data on mechanisms of nutrient transport and atmospheric deposition in the tropics, nutrient and material retention capacities of tropical impoundments, and N/P coupling and stoichiometric impacts of nutrient supplies on tropical aquatic communities. The current base of biogeochemical data suggests that alterations in the N-cycle will have greater impacts on tropical aquatic ecosystems than those already observed in the temperate zone.     

Assessing the diversity and specificity of two freshwater viral communities through metagenomics

Transitions between saline and fresh waters have been shown to be infrequent for microorganisms. Based on host-specific interactions, the presence of specific clades among hosts suggests the existence of freshwater-specific viral clades. Yet, little is known about the composition and diversity of the temperate freshwater viral communities, and even if freshwater lakes and marine waters harbor distinct clades for particular viral sub-families, this distinction remains to be demonstrated on a community scale.To help identify the characteristics and potential specificities of freshwater viral communities, such communities from two lakes differing by their ecological parameters were studied through metagenomics. Both the cluster richness and the species richness of the Lake Bourget virome were significantly higher that those of the Lake Pavin, highlighting a trend similar to the one observed for microorganisms (i.e. the specie richness observed in mesotrophic lakes is greater than the one observed in oligotrophic lakes). Using 29 previously published viromes, the cluster richness was shown to vary between different environment types and appeared significantly higher in marine ecosystems than in other biomes. Furthermore, significant genetic similarity between viral communities of related environments was highlighted as freshwater, marine and hypersaline environments were separated from each other despite the vast geographical distances between sample locations within each of these biomes. An automated phylogeny procedure was then applied to marker genes of the major families of single-stranded (Microviridae, Circoviridae, Nanoviridae) and double-stranded (Caudovirales) DNA viruses. These phylogenetic analyses all spotlighted a very broad diversity and previously unknown clades undetectable by PCR analysis, clades that gathered sequences from the two lakes. Thus, the two freshwater viromes appear closely related, despite the significant ecological differences between the two lakes. Furthermore, freshwater viral communities appear genetically distinct from other aquatic ecosystems, demonstrating the specificity of freshwater viruses at a community scale for the first time.     

Bryozoans are returning home: recolonization of freshwater ecosystems inferred from phylogenetic relationships

Bryozoans are aquatic invertebrates that inhabit all types of aquatic ecosystems. They are small animals that form large colonies by asexual budding. Colonies can reach the size of several tens of centimeters, while individual units within a colony are the size of a few millimeters. Each individual within a colony works as a separate zooid and is genetically identical to each other individual within the same colony. Most freshwater species of bryozoans belong to the Phylactolaemata class, while several species that tolerate brackish water belong to the Gymnolaemata class. Tissue samples for this study were collected in the rivers of Adriatic and Danube basin and in the wetland areas in the continental part of Croatia (Europe). Freshwater and brackish taxons of bryozoans were genetically analyzed for the purpose of creating phylogenetic relationships between freshwater and brackish taxons of the Phylactolaemata and Gymnolaemata classes and determining the role of brackish species in colonizing freshwater and marine ecosystems. Phylogenetic relationships inferred on the genes for 18S rRNA, 28S rRNA, COI, and ITS2 region confirmed Phylactolaemata bryozoans as radix bryozoan group. Phylogenetic analysis proved Phylactolaemata bryozoan's close relations with taxons from Phoronida phylum as well as the separation of the Lophopodidae family from other families within the Plumatellida genus. Comparative analysis of existing knowledge about the phylogeny of bryozoans and the expansion of known evolutionary hypotheses is proposed with the model of settlement of marine and freshwater ecosystems by the bryozoans group during their evolutionary past. In this case study, brackish bryozoan taxons represent a link for this ecological phylogenetic hypothesis. Comparison of brackish bryozoan species Lophopus crystallinus and Conopeum seurati confirmed a dual colonization of freshwater ecosystems throughout evolution of this group of animals.     

Identification of Freshwater Phycodnaviridae and Their Potential Phytoplankton Hosts, Using DNA pol Sequence Fragments and a Genetic-Distance Analysis

Viruses that infect phytoplankton are an important component of aquatic ecosystems, yet in lakes they remain largely unstudied. In order to investigate viruses (Phycodnaviridae) infecting eukaryotic phytoplankton in lakes and to estimate the number of potential host species, samples were collected from four lakes at the Experimental Lakes Area in Ontario, Canada, during the ice-free period (mid-May to mid-October) of 2004. From each lake, Phycodnaviridae DNA polymerase (pol) gene fragments were amplified using algal-virus-specific primers and separated by denaturing gradient gel electrophoresis; 20 bands were extracted from the gels and sequenced. Phylogenetic analysis indicated that freshwater environmental phycodnavirus sequences belong to distinct phylogenetic groups. An analysis of the genetic distances “within” and “between” monophyletic groups of phycodnavirus isolates indicated that DNA pol sequences that differed by more than 7% at the inferred amino acid level were from viruses that infect different host species. Application of this threshold to phylogenies of environmental sequences indicated that the DNA pol sequences from these lakes came from viruses that infect at least nine different phytoplankton species. A multivariate statistical analysis suggested that potential freshwater hosts included Mallomonas sp., Monoraphidium sp., and Cyclotella sp. This approach should help to unravel the relationships between viruses in the environment and the phytoplankton hosts they infect.