MiR-130a 在猪皮下脂肪细胞分化中的调节作用

为研究miR-130a对猪皮下脂肪细胞分化的影响及可能机制,本试验分离猪皮下脂肪前体细胞,诱导分化为成熟脂肪细胞,检测脂肪细胞分化过程中脂滴变化及miR-130a及其可能靶基因TNF α和PPARγ的表达模式.同时合成miR-130a mimics及inhibitor 对细胞进行转染,并以乱序序列作为阴性对照（NC）.细胞转染24 h后进行诱导分化,连续诱导8 d,检测各处理细胞的聚脂情况及甘油三酯含量变化,荧光定量PCR检测脂肪细胞分化相关基因的表达变化.结果显示,猪皮下脂肪前体细胞分化过程中脂滴逐渐变大增多,miR-130a、TNF α和PPARγ的表达模式具有一定的相似性.转染结果显示,相对于对照组,miR 130a mimics转染组细胞脂滴减少变小,甘油三酯含量降低（P<0.05）,脂肪细胞分化相关基因LPL、PPARγ、adiponectin、FASN和葡萄糖转运相关基因GLUT1,GLUT4以及JNK通路上的PDE3B的表达均比对照组显著下调（P<0.01）;而miR-130a inhibitor转染组细胞则脂滴增多,甘油三酯含量提高（P<0.05）,但大部分分化相关基因的表达与对照组无显著差异,提示miR-130a可能不只通过单一的靶基因影响脂肪细胞分化.其结果为后续深入研究miR-130a调节猪脂肪细胞分化的通路及机制奠定基础.     

miR-29a靶基因预测及其相关生物信息学分析

目的:通过对miR-29a进行靶基因预测及相关生物信息学分析,为miR-29a靶基因的实验验证提供数据支持,以期为深入研究miR-29a的生物学功能和调控机制提供理论指导。方法:利用PubMed检索miR-29a相关文章,通过miRBase在线工具分析miR-29a序列。应用TargetScan及miRNAda两种计算方法预测miR-29a靶基因并取其交集作为分析的基因集合,分别进行基因本体(gene ontology,GO)中的分子功能和生物学过程以及KEGG(Kyoto Encyclopedia of Genes and Genomes)生物通路富集分析。结果:(1)miR-29a序列在多物种间具有高度保守性。(2)两种方法预测miR-29a靶基因交集共191个。(3)miR-29a靶基因GO分子功能集中于转录因子活性、DNA结合和钙离子结合等(P0.05);miR-29a靶基因GO生物学过程集中于调控转录、细胞粘附、细胞增殖与凋亡等(P0.05);KEGG生物通路主要富集于PI3K-AKT信号通路、JAK-STAT信号通路、T细胞受体信号通路和胰岛素信号通路等信号转导通路,以及肺小细胞癌和子宫内膜癌等疾病通路(P0.05)。结论:miR-29a可能通过参与多个靶基因信号通路的调控,在机体的多种生理病理过程中发挥重要作用,是一个颇有研究价值的生物学靶标。     

miR-203a靶向及其靶基因对乳腺癌淋巴结转移的影响*

目的:探讨miR-203a靶向及其靶基因ATM在乳腺癌组织中的表达及相关性,为乳腺癌的发病机制尤其是淋巴结转移机制提供理论依据。方法:收集30例配对的乳腺癌和癌旁正常组织,对两组标本采用RT-qPCR检测miR-203a及ATM的相对表达量,对miR-203a和ATM进行相关分析,并对其与临床病理特征进行相关分析,比较miR-203a和ATM的表达在淋巴结转移和未转移之间是否有统计学差异。结果:与癌旁正常组织相比,乳腺癌组织中miR-203a的表达显著升高(P＜0.01),ATM的表达显著降低(P＜0.01),二者呈显著负相关(r=-0.847,P＜ 0.01);miR-203a和ATM的表达均与淋巴结是否转移与不同临床分期显著相关(P＜0.05);miR-203a在淋巴结已转移组中的表达显著低于未转移组(P＜0.05),ATM在淋巴结已转移组中的表达显著高于未转移组(P＜0.01)。结论:乳腺癌早期miR-203a过表达抑制其靶基因ATM的表达很可能是一种调节肿瘤细胞增殖、转移和侵袭性的保护机制,到中晚期下调miR-203a上调ATM基因,可能参与淋巴结转移。     

miR-15a靶基因的预测及生物信息学分析

目的:对目前研究较为广泛的miR-15a的靶基因进行预测及相关生物信息学分析,以期为miR-15a靶基因的实验验证提供数据支持,并为深入研究miR-15a的调控机制及生物学功能奠定基础和提供理论指导。方法:选择TargetScan5.1与PicTar两种计算方法预测miR-15a的靶基因的交集作为分析的基因集合,分别进行GO注释描述、GO富集分析和生物通路富集分析。结果与结论:预测靶基因集合分别富集在转录调控、蛋白质修饰、细胞周期等生物学过程和蛋白激酶活性等分子功能上(P0.01);经典miR-15a预测靶基因集合显著富集于KEGG通路数据库中的Wnt信号通路、细胞周期和p53信号通路等5个信号转导通路及前列腺癌、慢性髓细胞性白血病、黑素瘤等7个疾病通路中(P0.05)。     

miR-449a在乳腺癌组织中的表达及生物信息学分析

探讨miR-449a在乳腺癌组织中的表达及其在乳腺癌发生发展过程中的作用。利用实时荧光定量PCR检测83例乳腺癌和癌旁组织中miR-449a的相对表达量,发现miR-449a在乳腺癌组织中的表达水平高于癌旁组织,并与肿瘤组织学级别、大小、雌激素受体状态和孕激素受体状态有关(P＜0.05)。miR-449a在三阴性乳腺癌中的表达水平显著低于管腔型。使用Kaplan-Meier Plotter数据库进行生存分析,结果显示在三阴性乳腺癌中miR-449a低表达组总生存率显著低于高表达组,而在管腔B型乳腺癌中miR-449a高表达组总生存率显著降低(P＜0.05)。利用ENCORI数据库预测得到靶基因186个,通过metascape数据库进行富集分析,发现其功能涉及间充质细胞分化、细胞迁移、内分泌抵抗、粘附连接、肌动蛋白细胞骨架调节以及NOTCH、TGF-β、Wnt、PI3K-Akt等介导的信号通路。通过string数据库进行蛋白互作网络分析,并使用Cytoscape软件筛选出由NOTCH1、JAG1和cyclin D1等蛋白构成的关键子网络。应用ENCORI数据库分析miR-449a与NOTCH途径靶基因的相关性,发现miR-449a与NOTCH1在乳腺癌组织中的表达呈负相关。本研究结果表明miR-449a在乳腺癌组织中的表达具有明显的异质性,可通过影响多种信号通路参与肿瘤发展过程,调控NOTCH信号通路可能是其在乳腺癌中的重要机制。     

miR-23a对软骨细胞增殖、分化和氧化应激的影响机制

[目的]探究miR-23a调控AMPK/SIRT1通路对人退变关节软骨细胞增殖、分化和氧化应激的影响。[方法]人退变关节软骨分为对照组、miR-23a mimic组、miR-23a inhibitor组。通过对以上三组细胞转染miR-23a NC、miR-23a mimic和miR-23a inhibitor转染来干扰细胞中miR-23a的表达水平。转染完成后,分别通过CCK-8、 ELISA和Western Blot实验检测各组细胞增殖、氧化应激水平、分化能力以及AMPK/SIRT1信号通路的表达水平。[结果]三组细胞的各项比较差异显著(P<0.05)。与对照组相比,miR-23a mimic组的miR-23a、骨形成蛋白(BMP)2、BMP4、MDA水平显著升高(P<0.05),而OD值、SOD、AMPK/SIRT1通路水平显著降低(P<0.05)。与对照组相比,miR-23a inhibitor组的miR-23a、BMP2、BMP4、MDA水平显著降低(P<0.05),而OD值、SOD、AMPK/SIRT1通路水平显著升高(P<0.05)。[结论] ...     

肝癌细胞HepG2中p53调控miRNA-3661的生物信息分析与功能验证

对已在前期实验中通过Dox诱导肝癌细胞HepG2 DNA损伤发现的受p53调控的hsa-miR-3661进行生物信息学分析,并通过分子生物学实验对其功能进行了验证,为miR-3661在肝肿瘤中的调控机制的研究提供理论基础。获取miR-3661结构与序列信息;预测靶基因,使用DAVID进行miRNA靶基因功能富集分析;分析miR-3661的p53结合位点,通过基因间的相互作用构建调控网络;进行细胞增殖实验验证miR-3661抑制肿瘤功能。结果表明,miR-3661序列保守,启动子区存在p53结合位点,暗示p53与hsa-miR-3661存在直接调控;预测靶基因1 009个,369个显著富集于细胞周期调控、细胞增殖、细胞凋亡等肿瘤相关生物学过程(P0.05),主要参与了癌症信号通路、MAPK信号通路与Erb B信号通路(P0.05);通过268组基因间的相互作用数据构建了p53、hsa-miR-3661和靶基因的调控网络,从系统生物学角度分析了参与多个肿瘤生物进程的关键靶基因;在实验中证实过表达miR-3661可以显著抑制肝癌细胞HepG2的增殖过程(P-value=0.001 46)。miR-3661受p53直接调控,其靶基因显著富集于多种肿瘤相关生物进程与信号通路,过表达miR-3661可显著抑制肝癌细胞增殖。     

miR-335在肿瘤组织中的表达及其预测靶基因的生物信息学分析

目的:分析miR-335在多种肿瘤组织与癌旁组织中的表达,预测其靶基因并进行相关生物信息学分析,为进一步研究miR-335在肿瘤中的调控机制提供理论基础。方法:分析miR-335的保守性及在多个肿瘤组织中的表达;预测miR-335靶基因,并使用DAIVID对miR-335靶基因进行生物信息学分析。结果:miR-335序列高度保守,在肝癌、肺癌、乳腺癌、肝内胆管癌、脂肪肉瘤中表达下调(P<0.05)。预测miR-335靶基因共34个,靶基因集合功能富集于细胞迁移、凋亡、转录调控,以及蛋白质分子连接、细胞骨架组成等生物学过程和分子功能(P<0.05);主要参与了轴突向导和黏着斑信号通路、黑素瘤疾病信号通路及TGF-β信号通路(P<0.05)。结论:miR-335在多种肿瘤中表达异常,且涉及多个生物学过程和信号转导通路,与肿瘤的发生发展密切相关。     

血清miR-203、miR-217表达与急性髓系白血病患者预后的关系

摘要 目的：探究血清miR-203、miR-217表达与急性髓系白血病(AML)患者预后的关系。方法：选择2010年4月至2014年4月我院诊治的101例AML患者作为AML组,AML组根据治疗效果进一步分为完全缓解组和复发组,选择同期在我院体检的101例健康者作为健康组。采用荧光定量PCR检测各组的血清miR-203、miR-217表达水平,分析血清miR-203、miR-217表达水平与患者临床病理特征的关系,采用Kaplan-Meier法分析不同血清miR-203、miR-217表达水平AML患者的预后。结果：与健康组相比,AML组的血清miR-203、miR-217表达水平明显更低（P<0.05）。与完全缓解组相比,复发组的血清miR-203、miR-217表达水平明显更低（P<0.05）。血清miR-203表达水平与AML患者白细胞计数相关（P<0.05）,而血清miR-217表达水平与AML患者血小板计数相关（P<0.05）。血清miR-203相对高表达和miR-217相对高表达的AML患者5年生存率分别高于血清miR-203相对低表达和miR-217相对低表达患者（Log Rank ^miR-203 =17.870,Log Rank ^miR-217 =28.926,均P=0.000）。结论：血清miR-203、miR-217的表达水平与AML密切相关,检测血清miR-203、miR-217表达水平可能有助于评估AML患者的预后。     

miR-124a、let-7表达与胃癌临床病理特征和化疗疗效的相关性

目的:探讨外周血miR-124a和let-7的表达与胃癌临床病理特征和化疗疗效的相关性。方法:选取2013年1月～2017年3月在我院接受化疗的晚期胃癌患者为研究对象,所有患者入院后均择期行XELOX方案(奥沙利铂+卡培他滨)化疗。化疗前后,采用实时荧光定量PCR检测患者外周血miR-124a和let-7表达,分析其与患者临床病理特征的关系。根据化疗疗效将患者分为疾病控制组和疾病进展组,分析外周血miR-124a和let-7表达与化疗疗效的关系。结果:外周血miR-124a和let-7表达与肿瘤大小、分化程度、TNM分期和淋巴转移有关(P0.05)。肿瘤≥3 cm、中低分化、TNM分期Ⅳ期和有淋巴转移的患者外周血miR-124a和let-7表达量更低。与化疗前比较,化疗后患者外周血miR-124a和let-7相对表达量显著增加,差异均有统计学意义(P0.05)。95例患者,CR 0例(0.0%),PR 12例(12.6%),SD 20例(21.1%),PD 63例(66.3%),ORR为12.6%,DCR为33.7%。疾病控制组化疗后外周血miR-124a和let-7相对表达量明显高于疾病进展组,差异均有统计学意义(P0.05)。Spearman秩相关分析显示外周血miR-124a和let-7相对表达量与化疗疗效呈正相关(rs=0.613、0.574,均P0.05)。结论:晚期胃癌患者外周血miR-124a和let-7的表达与肿瘤大小、分化程度、TNM分期、淋巴转移和化疗疗效相关。     

The mir-51 family of microRNAs functions in diverse regulatory pathways in Caenorhabditis elegans

The mir-51 family of microRNAs (miRNAs) in C. elegans are part of the deeply conserved miR-99/100 family. While loss of all six family members (mir-51-56) in C. elegans results in embryonic lethality, loss of individual mir-51 family members results in a suppression of retarded developmental timing defects associated with the loss of alg-1. The mechanism of this suppression of developmental timing defects is unknown. To address this, we characterized the function of the mir-51 family in the developmental timing pathway. We performed genetic analysis and determined that mir-51 family members regulate the developmental timing pathway in the L2 stage upstream of hbl-1. Loss of the mir-51 family member, mir-52, suppressed retarded developmental timing defects associated with the loss of let-7 family members and lin-46. Enhancement of precocious defects was observed for mutations in lin-14, hbl-1, and mir-48(ve33), but not later acting developmental timing genes. Interestingly, mir-51 family members showed genetic interactions with additional miRNA-regulated pathways, which are regulated by the let-7 and mir-35 family miRNAs, lsy-6, miR-240/786, and miR-1. Loss of mir-52 likely does not suppress miRNA-regulated pathways through an increase in miRNA biogenesis or miRNA activity. We found no increase in the levels of four mature miRNAs, let-7, miR-58, miR-62 or miR-244, in mir-52 or mir-52/53/54/55/56 mutant worms. In addition, we observed no increase in the activity of ectopic lsy-6 in the repression of a downstream target in uterine cells in worms that lack mir-52. We propose that the mir-51 family functions broadly through the regulation of multiple targets, which have not yet been identified, in diverse regulatory pathways in C. elegans.     

环境相关四环素长期暴露对吉富罗非鱼生长性能、肝脏脂肪代谢和抗氧化反应的影响

为研究水环境浓度四环素(Tetracycline, TC)长期暴露对鱼类的影响, 实验以吉富罗非鱼(Oreochromis niloticus)为实验模型, 将其暴露于0、400和800 ng/L三种四环素水平下10周。结果表明, 相较于对照组, 四环素暴露显著提高了生长性能, 但增加了肝脏中甘油三酯含量和四环素浓度。脂肪生成基因表达(fas、scd、accα、srebp1和pparγ)被上调, 但降低了与脂肪分解相关基因的表达(atgl、hsl、cpt1和pparα)。此外, 6-磷酸葡萄糖脱氢酶(6PGD)、葡萄糖-6-磷酸脱氢酶(G6PD)、异柠檬酸脱氢酶(ICDH)、苹果酸脱氢酶(ME)及脂肪酸合成酶(FAS)的活性显著增加, 但肉碱棕榈酰转移酶1(CPT1)活性则被显著抑制, 这与基因表达相一致。而且, 四环素暴露显著降低过氧化氢酶、总超氧化物歧化酶的活性及总抗氧化能力, 并诱导了鱼类的氧化应激, 导致丙二醛水平显著增加。因此, 与环境相关四环素浓度可促进吉富罗非鱼的生长性能、上调产脂代谢、降低抗氧化能力并诱导脂质过氧化。     

Diagnostic and mechanistic values of microRNA-130a and microRNA-203 in patients with papillary thyroid carcinoma

This research was determined to unearth the diagnostic values and the effects of microRNA (miR)-130a and miR-203 on cell proliferation and apoptosis of papillary thyroid carcinoma (PTC). Expression of miR-130a and miR-203 were evaluated and were subjected to correlation analysis. The diagnostic values of miR-130a and miR-203 and their associations with clinicopathological characteristics of patients with PTC were measured. The expression levels of miR-130a and miR-203 in K1, IHH4, TPC-1, and BCPAP cells together with Nthy-ori 3-1 cells were measured. Cells were transfected with miR-130a mimics, miR-203 mimics, and coordinate of miR-130a mimics and miR-203 mimics. Cell growth, colony formation, and apoptosis were detected by cell counting kit-8 (CCK-8) assay, colony formation assay, and flow cytometry. PTC tissues had decreased miR-130a and miR-203 relative to adjacent normal tissues and normal thyroid tissue (both P < .05). miR-130a was in positive correlation with miR-203 (r = 0.754, P < .01). miR-130a was related with tumor infiltration and tumor stage while miR-203 was implicated in tumor stage and lymph-node metastasis. The area under the curve (AUC), sensitivity, as well as specificity for miR-130 in predicting PTC was 0.839, 74.5%, and 85.0% and those for miR-203 were 0.818, 73.7%, and 84.0%, respectively. PTC cells had lower expression of miR-130a and miR-203 than that in Nthy-ori 3-1 cells. After transfected miR-130a and miR-203 mimics in BCPAP and TPC-1 cells, both cells had increased miR-130a and miR-203, promoted cell apoptosis rate and decreased cell growth rate, and colony formation ability. After coordinately transfected with miR-130a mimics and miR-203 mimics, the cell growth and colony formation ability of PTC cells were restrained, and apoptosis of PTC cells was elevated (all P < .05). This study highlights that miR-130a and miR-203 have satisfactory diagnostic value in PTC and upregulated miR-130a and miR-203 can inhibit PTC cell growth and promote cell apoptosis.     

Bioinformatic prediction and analysis of glucolipid metabolic regulation by miR-34a in <Emphasis Type="Italic">Megalobrama amblycephala</Emphasis>

The objective of this study was to analyze the target genes and regulatory function of miR-34a in Megalobrama amblycephala using second-generation high-throughput sequencing and bioinformatic tools. Functional enrichment analysis was performed by gene ontology. MiR-34a and target gene expression levels were measured in M. amblycephala fed normal and high-carbohydrate diets. The results revealed that miR-34a was highly conserved in several species, and miR-34a of M. amblycephala has a close evolutionary relationship to that of zebrafish and common carp. miRanda, TargetScan, RNAhybrid predicted 5,185, 6,282 and 2,168 target genes, respectively, and 645 target genes were in common. According to annotation information, the target genes were enriched in phosphate metabolism, glycerophospholipid metabolism, Golgi vesicle transport, cell division, and other biological processes (P?<?0.05). Pathway enrichment analysis revealed that these target genes were mainly enriched in alpha-linolenic acid and linoleic acid metabolism, ether lipid metabolism, VEGF signaling pathway, Fc epsilon RI signaling pathway, GnRH signaling pathway, and MAPK signaling pathway (P?<?0.05). The regulatory role of miR-34a was more significant in the liver than in the brain of M. amblycephala. MiR-34a regulates glucose lipid homeostasis induced by high glucose diets by upregulating hepatic PI3K/Akt, FOXO, and TOR signaling pathways.     

Impact of preovulatory estradiol concentrations on conceptus development and uterine gene expression

The objectives of this study included: (1) identify the expression of miRNAs specific to bovine cumulus-oocyte complexes (COCs) during late oogenesis, (2) characterize the expression of candidate miRNAs as well as some miRNA processing genes, and (3) computationally identify and characterize the expression of target mRNAs for candidate miRNAs. Small RNAs in the 16-27 bp range were isolated from pooled COCs aspirated from 1- to 10-mm follicles of beef cattle ovaries and used to construct a cDNA library. A total 1798 putative miRNA sequences from the cDNA library of small RNA were compared to known miRNAs. Sixty-four miRNA clusters matched previously reported sequences in the miRBase database and 5 miRNA clusters had not been reported. TaqMan miRNA assays were used to confirm the expression of let-7b, let-7i, and miR-106a from independent collections of COCs. Real-time PCR assays were used to characterize expression of miRNA processing genes and target mRNAs (MYC and WEE1A) for the candidate miRNAs from independent collections of COCs. Expression data were analyzed using general linear model procedures for analysis of variance. The expression of let-7b and let-7i were not different between the cellular populations from various sized follicles. However, miR-106a expression was greater (P<0.01) in oocytes compared with COCs and granulosa cells. Furthermore, all the miRNA processing genes have greater expression (P<0.001) in oocytes compared with COCs and granulosa cells. The expression of potential target mRNAs for let-7 and let-7i (i.e., MYC), and miR-106a (i.e., WEE1A) were decreased (P<0.05) in oocytes compared with COCs and granulosa cells. These results demonstrate specific miRNAs within bovine COCs during late oogenesis and provide some evidence that miRNAs may play a role regulating maternal mRNAs in bovine oocytes.