Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

Understanding the molecular basis of plant performance under water-limiting conditions will help to breed crop plants with a lower water demand. We investigated the physiological and gene expression response of drought-tolerant (IR57311 and LC-93-4) and drought-sensitive (Nipponbare and Taipei 309) rice (Oryza sativa L.) cultivars to 18 days of drought stress in climate chamber experiments. Drought stressed plants grew significantly slower than the controls. Gene expression profiles were measured in leaf samples with the 20 K NSF oligonucleotide microarray. A linear model was fitted to the data to identify genes that were significantly regulated under drought stress. In all drought stressed cultivars, 245 genes were significantly repressed and 413 genes induced. Genes differing in their expression pattern under drought stress between tolerant and sensitive cultivars were identified by the genotype x environment (G x E) interaction term. More genes were significantly drought regulated in the sensitive than in the tolerant cultivars. Localizing all expressed genes on the rice genome map, we checked which genes with a significant G x E interaction co-localized with published quantitative trait loci regions for drought tolerance. These genes are more likely to be important for drought tolerance in an agricultural environment. To identify the metabolic processes with a significant G x E effect, we adapted the analysis software MapMan for rice. We found a drought stress induced shift toward senescence related degradation processes that was more pronounced in the sensitive than in the tolerant cultivars. In spite of higher growth rates and water use, more photosynthesis related genes were down-regulated in the tolerant than in the sensitive cultivars.     

Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency

Background

Durum wheat often faces water scarcity and high temperatures, two events that usually occur simultaneously in the fields. Here we report on the stress responsive strategy of two durum wheat cultivars, characterized by different water use efficiency, subjected to drought, heat and a combination of both stresses.

Results

The cv Ofanto (lower water use efficiency) activated a large set of well-known drought-related genes after drought treatment, while Cappelli (higher water use efficiency) showed the constitutive expression of several genes induced by drought in Ofanto and a modulation of a limited number of genes in response to stress. At molecular level the two cvs differed for the activation of molecular messengers, genes involved in the regulation of chromatin condensation, nuclear speckles and stomatal closure. Noteworthy, the heat response in Cappelli involved also the up-regulation of genes belonging to fatty acid β-oxidation pathway, glyoxylate cycle and senescence, suggesting an early activation of senescence in this cv. A gene of unknown function having the greatest expression difference between the two cultivars was selected and used for expression QTL analysis, the corresponding QTL was mapped on chromosome 6B.

Conclusion

Ofanto and Cappelli are characterized by two opposite stress-responsive strategies. In Ofanto the combination of drought and heat stress led to an increased number of modulated genes, exceeding the simple cumulative effects of the two single stresses, whereas in Cappelli the same treatment triggered a number of differentially expressed genes lower than those altered in response to heat stress alone. This work provides clear evidences that the genetic system based on Cappelli and Ofanto represents an ideal tool for the genetic dissection of the molecular response to drought and other abiotic stresses.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-14-821) contains supplementary material, which is available to authorized users.     

Combined drought and heat stress in wheat: changes in some heat shock proteins

The influence of combined and individually applied drought and heat stress was studied in two wheat (Triticum aestivum L.) cultivars: resistant cv. Katya and susceptible cv. Sadovo. Relative water content decreased and electrolyte leakage increased due to individual and combined application of both stresses. Initial heat shock protein profile has been outlined via SDS electrophoresis of leaf extracts. The results obtained were confirmed by immunoblotting with anti-HSP70 monoclonal antibodies, anti-HSP110 polyclonal antibodies and anti-α β-crystalline polyclonal antibodies. The effect of simultaneously applied water stress and heat shock resembled the alterations in protein expression provoked only by water stress and differed significantly from the changes occurring after the individual application of heat stress.     

Proteomics uncovers a role for redox in drought tolerance in wheat

Proteomic analysis offers a new approach to identify a broad spectrum of genes that are expressed in living systems. We applied a proteomic approach to study changes in wheat grain in response to drought, a major environmental parameter adversely affecting development and crop yield. Three wheat genotypes differing in genetic background were cultivated in field under well-watered and drought conditions by following a randomized complete block design with four replications. The overall effect of drought was highly significant as determined by grain yield and total dry matter. About 650 spots were reproducibly detected and analyzed on 2-DE gels. Of these, 121 proteins showed significant change under drought condition in at least one of the genotypes. Mass spectrometry analysis using MALDI-TOF/TOF led to the identification of 57 proteins. Two-thirds of identified proteins were thioredoxin (Trx) targets, in accordance with the link between drought and oxidative stress. Further, because of contrasting changes in the tolerant and susceptible genotypes studied, several proteins emerge as key participants in the drought response. In addition to providing new information on the response to water deprivation, the present study offers opportunities to pursue the breeding of wheat with enhanced drought tolerance using identified candidate genetic markers. The 2-DE database of wheat seed proteins is available for public access at http://www.proteome.ir.     

Water deficit induces variation in expression of stress-responsive genes in two peanut (Arachis hypogaea L.) cultivars with different tolerance to drought.

Peanut (Arachis hypogaea L.) is an important subsistence and cash crop in the semi-arid tropics where it often suffers from drought stress. Although its ecophysiological responses are studied, little is known about the molecular events involved in its adaptive responses to drought. The aim of this study was to investigate the involvement of membrane phospholipid and protein degrading enzymes as well as protective proteins such as "late embryogenesis-abundant" (LEA) protein in peanut adaptive responses to drought. Partial cDNAs encoding putative phospholipase D alpha, cysteine protease, serine protease and a full-length cDNA encoding a LEA protein were cloned. Their expression in response to progressive water deficit and rehydration was compared between cultivars differing in their tolerance to drought. Differential gene expression pattern according to either water deficit intensity and cultivar's tolerance to drought were observed. A good correspondence between the molecular responses of the studied cultivars and their physiological responses previously defined in greenhouse and field experiments was found. Molecular characters, as they were detectable at an early stage, could therefore be efficiently integrated in groundnut breeding programmes for drought adaptation. Thus, the relevance of the target genes as drought tolerance indicators is discussed.     

水分胁迫下内生真菌球毛壳ND35对冬小麦苗期生长和抗旱性的影响

为明确不同水分条件下内生真菌对冬小麦苗期生长和抗旱性的影响,以抗旱型小麦品种山农16和水分敏感型小麦品种山农22为材料,利用荧光定量PCR技术检测小麦干旱诱导基因脱水素wzy2的表达量来了解冬小麦在干旱胁迫下相关基因的表达差异,通过测定相关生理指标与酶活性来判断小麦发育及其在干旱胁迫下的生理响应状况。结果表明,与正常水分ND35组相比,接种球毛壳菌(Chaetomium globosum)ND35的干旱处理组小麦的根冠比、总蛋白含量、脯氨酸含量及丙二醛含量等指标显著提高,小麦叶片含水量和可溶性糖含量有所降低。在干旱处理组中,球毛壳菌ND35可以显著提高小麦山农16的根长和山农22的株高,接种球毛壳ND35的山农16脯氨酸含量、可溶性糖含量、过氧化氢酶活性比对照组均显著提高,丙二醛含量比对照组降低9.0%,但差异不显著;山农22脯氨酸含量和过氧化氢酶活性比对照组显著提高,丙二醛含量和可溶性糖含量比对照组有所降低,但可溶性糖含量差异不显著;相对定量检测数据显示,接种球毛壳ND35后,两种小麦脱水素wzy2基因的表达量较对照组均能够显著提高。综合分析说明内生真菌球毛壳ND35可以促进冬小麦苗期根系和植株发育,小麦提前进入三叶期,增强小麦避旱性,同时提高小麦根系活力,增强小麦耐旱性;提高个体细胞内水分、糖分、脯氨酸含量,降低丙二醛的氧化性损伤,增强过氧化氢酶活性,从而提高两种冬小麦对干旱胁迫的耐受能力;球毛壳ND35促进小麦干旱诱导相关基因wzy2的表达量,进而提高抗旱相关蛋白的表达,从而提高两种冬小麦耐脱水性和对干旱胁迫的适应性。     

Expression of AtSAP5 in cotton up-regulates putative stress-responsive genes and improves the tolerance to rapidly developing water deficit and moderate heat stress

The regulation of gene expression is a key factor in plant acclimation to stress, and it is thought that manipulation of the expression of critical stress-responsive genes should ultimately provide increased protection against abiotic stress. The aim of this study was to test the hypothesis that the ectopic expression of the AtSAP5 (AT3G12630) gene in transgenic cotton (Gossypium hirsutum, cv. Coker 312) will improve tolerance to drought and heat stress by up-regulating the expression of endogenous stress-responsive genes. The SAP5 gene is a member of the stress-associated family of genes that encode proteins containing A20/AN1 zinc finger domains. Under non-stressful conditions, cotton plants that expressed the AtSAP5 gene showed elevated expression of at least four genes normally induced during water deficit or heat stress. The rate of net CO(2) assimilation A for three of four transgenic lines tested was less sensitive to rapidly developing water deficit over 4d than untransformed wild-type plants, but the recovery of A following drought was not significantly affected. The enhanced protection of photosynthesis during drought was determined to be primarily at the biochemical level, since the extent of stomatal closure was not significantly different for all genotypes. Expression of AtSAP5 resulted in the complete protection of photosystem (PS) II complexes from photodamage at mid-day after 4d of drought, whereas wild-type plants experienced a 20% decline in active photosystem II (PSII) complexes. In addition, enhanced protection of seedling growth and leaf viability was associated with the expression of AtSAP5. Since A for the transgenic plants was significantly more heat tolerant than A for wild-type plants, we conclude that ectopic expression of SAP genes is a potentially viable approach to improving carbon gain and productivity for cotton grown in semi-arid regions with severe drought and heat stress.