DNA Fingerprinting of Pearls to Determine Their Origins

We report the first successful extraction of oyster DNA from a pearl and use it to identify the source oyster species for the three major pearl-producing oyster species Pinctada margaritifera, P. maxima and P. radiata. Both mitochondrial and nuclear gene fragments could be PCR-amplified and sequenced. A polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assay in the internal transcribed spacer (ITS) region was developed and used to identify 18 pearls of unknown origin. A micro-drilling technique was developed to obtain small amounts of DNA while maintaining the commercial value of the pearls. This DNA fingerprinting method could be used to document the source of historic pearls and will provide more transparency for traders and consumers within the pearl industry.     

Polysaccharides of Calcareous Algae and Their Effect on the Calcification Process

The composition and structure of polysaccharides from several groups of calcareous algae (including calcareous cyanobacteria), which differ in the calcification mode (extracellular, cell wall, or intracellular), are reviewed. Two families of marine algae, Corallinaceae (Rhodophyta) and Coccolithophoraceae (Prymnesiophyta = Haptophyta), are considered in detail; they exhibit the cell wall and intracellular calcification modes, respectively, and synthesize unusual polysaccharides that seem to directly participate in the calcification process.     

Macromolecular Physiology of Plastids

The composition and amount of carotenoid pigments were determined in etiolated seedling leaves of 6 barley (Hordeum vulgare L.) mutants, comprising 1 xantha and 5 tigrina mutants. All mutants had on a mole basis approximately the same content of carotenoids as the wild type. The mutants xan-u²¹, tig-n³², and tig-³³ contained significantly higher amounts of carotenes than the wild type, ranging from 32 to 68% of the total carotenoid content as compared to the 4–8% found in the wild type. In the mutants tig-b²³ and tig-o³⁴, only a slight increase in the amount of carotenes was notable. The carotene content and composition in tig-d¹² was indistinguishable from that of the wild type. The carotenes extracted from xan-u²¹, tig-b²³, tig-n³², tig-³³, and tig-o³⁴ were characterized by adsorption chromatography and spectrophotometry. Mutant xan-u²¹ is in the dark blocked in β-carotene synthesis, and accumulates the aliphatic polyenes: phytofluene, proneurosporene, poly-cis-lycopenes, neo-lycopene and lycopene. The other four mutants synthesize β-carotene, but accumulate in addition various higher saturated carotenes, the main components being ζ-carotene in tig-b²³, a lycopenic pigment in tig-n³² and tig-³³, and lycopene in tig-o³⁴. Accumulation of higher saturated carotenes appears correlated with specific aberrations of the membrane structure in plastids. The regulation of carotene and protochlorophyllide syntheses in etioplasts are closely linked as shown by the single gene mutants which affect both pathways. However, several mutants have been identified which cause defects in protochlorophyllide synthesis only.     

Extracellular Alkaline Phosphatase in Multicellular Marine Algae and Their Utilization of Glycerophosphate

The production of extracellular alkaline phosphatase by multicellular marine algae in axenic culture has been investigated. The algae studied were five species of Rhodophyta: Asterocytis ramosa, Goniotrichum elegans, Nemalion helminthoides, Polysiphonia urceolata and Rhodosorus marinus; and one species of Phaeophyta: Ecrocarpus confervoides. The extent of enzyme activity varies from one species to another. It also varies with the phosphorus conditions under which the alga is grown. The pattern of glycerophosphate utilization suggests that this type of compound is not taken up directly by the alga but split by the external enzyme before uptake of the phosphate-ion only. The enzyme performs its action outside the organism and appears both associated with the cells and free in the surrounding water. Assays with culture filtrate of Asterocytis and Ectocarpus show that the enzyme is an unspecific phosphomonoesterase with optimum activity far to the alkaline side. It is activated by Zn²⁺.     

Plastids in parasites of humans

It has recently emerged that malarial, toxoplasmodial and related parasites contain a vestigial plastid (the organelle in which photosynthesis occurs in plants and algae). The function of the plastid in these obligate intracellular parasites has not been established. It seems likely that modern apicomplexans derive from photosynthetic predecessors, which perhaps formed associations with protists and invertebrates and abandoned autotrophy in favour of parasitism. Recognition of a third genetic compartment in these parasites proffers alternative strategies for combating a host of important human and animal diseases. It also poses some fascinating questions about the evolutionary biology of this important group of pathogens.     

Parents' Cultural Belief Systems: Their Origins, Expressions, and Consequences

Parents' Cultural Belief Systems: Their Origins, Expressions, and Consequences. Sara Harkness and Charles M. Super, eds. New York: The Guilford Press, 1996. 558 pp.     

Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation

Xylella fastidiosa is a Gram negative plant pathogen causing many economically important diseases, and analyses of completely sequenced X. fastidiosa genome strains allowed the identification of many prophage-like elements and possibly phage remnants, accounting for up to 15% of the genome composition. To better evaluate the recent evolution of the X. fastidiosa chromosome backbone among distinct pathovars, the number and location of prophage-like regions on two finished genomes (9a5c and Temecula1), and in two candidate molecules (Ann1 and Dixon) were assessed. Based on comparative best bidirectional hit analyses, the majority (51%) of the predicted genes in the X. fastidiosa prophage-like regions are related to structural phage genes belonging to the Siphoviridae family. Electron micrograph reveals the existence of putative viral particles with similar morphology to lambda phages in the bacterial cell in planta. Moreover, analysis of microarray data indicates that 9a5c strain cultivated under stress conditions presents enhanced expression of phage anti-repressor genes, suggesting switches from lysogenic to lytic cycle of phages under stress-induced situations. Furthermore, virulence-associated proteins and toxins are found within these prophage-like elements, thus suggesting an important role in host adaptation. Finally, clustering analyses of phage integrase genes based on multiple alignment patterns reveal they group in five lineages, all possessing a tyrosine recombinase catalytic domain, and phylogenetically close to other integrases found in phages that are genetic mosaics and able to perform generalized and specialized transduction. Integration sites and tRNA association is also evidenced. In summary, we present comparative and experimental evidence supporting the association and contribution of phage activity on the differentiation of Xylella genomes.     

The Fine Structure of Avocado Plastids

Ultrastructural studies of both young and harvest-ripe avocadofruits have established that the skin and outer green layersof flesh contain chloroplasts with an extensive thylakoid system.Etioplasts occur in the yellow flesh adjacent to the stone.The pale-green flesh contains plastids, intermediate betweenchloroplasts and etioplasts, which have prominent prolamellarbodies from which radiate grana. When segments of both the yellow and pale-green flesh of maturefruit (7 cm diam.) are cultured in the light their prolamellarbodies do not disperse although there is a change in their crystallinity.The palegreen tissues of immature (4 mm and 2 cm diam.) fruitsalso contain etioplasts but on culturing these differentiateinto chloroplasts. Both chlorophyll content and the ratio ofchlorophyll a to b varied in the different tissues of youngand mature fruits.     

Origin and Evolution of Plastids and Photosynthesis in Eukaryotes

Recent progress in understanding the origins of plastids from endosymbiotic cyanobacteria is reviewed. Establishing when during geological time the endosymbiosis occurred remains elusive, but progress has been made in defining the cyanobacterial lineage most closely related to plastids, and some mechanistic insight into the possible existence of cryptic endosymbioses perhaps involving Chlamydia-like infections of the host have also been presented. The phylogenetic affinities of the host remain obscure. The existence of a second lineage of primary plastids in euglyphid amoebae has now been confirmed, but the quasipermanent acquisition of plastids by animals has been shown to be more ephemeral than initially suspected. A new understanding of how plastids have been integrated into their hosts by transfer of photosynthate, by endosymbiotic gene transfer and repatriation of gene products back to the endosymbiont, and by regulation of endosymbiont division is presented in context.Photosynthesis is biology’s equivalent of alchemy converting a common substance (CO₂) into a precious one (reduced carbon compounds rich in chemical energy). Freely available light energy is initially converted to precious chemical energy in the form of ATP. This energy, and the reducing power generated by splitting water molecules to release electrons, is used to fix carbon from atmospheric CO₂ and generate reduced carbon compounds that underpin the biosphere. It is estimated that plants and algae convert 258 billion tons of carbon dioxide into biomass by photosynthesis annually (Geider et al. 2001). Microfossils in ancient stromatolites indicate that cyanobacterium-like organisms had invented this process—or an early, perhaps nonoxygenic, version of it—at least 3.5 byo (billions of years old) (Lowe 1980; Walter et al. 1980; Schopf 1993). These photosynthetic prokaryotes substantially predate eukaryotes, which emerged much later (Rasmussen et al. 2008; Koonin 2010). The common ancestor of all eukaryotes entered into an endosymbiotic partnership with an α-proteobacterium that evolved into the mitochondrion, now the site of aerobic respiration in most eukaryotes (Gray 2012); animals and fungi are heterotrophic descendants of this partnership. Another lineage, which eventually produced the plants, entered into a second endosymbiotic partnership, this time with a cyanobacterium, which transplanted photosynthetic alchemy into eukaryotes to create plastids (Gray and Archibald 2012). This review will highlight recent progress in our understanding of the origin and evolution of plastids.     

Fate of Parasite and Host Organelle DNA during Cellular Transformation of Red Algae by Their Parasites

The transfer of a nucleus into a cytoplasm of a genetically foreign cell and its subsequent multiplication in the cytoplasm of this cell characterize most parasitic red algal species and their interactions with specific red algal hosts. Nuclei enter the host's cytoplasm upon cell fusion of parasite and host cell; here, they replicate, are spread to contiguous host cells, and ultimately are packaged into spores that reinfect other host thalli. In this study, we examined whether the proplastids and mitochondria that occur in these red algal adelphoparasites are acquired from their host or whether they are unique to the parasite and are brought into the host along with the parasite nucleus. To establish their origins and fates, plastid and mitochondrial restriction fragment length polymorphisms (RFLPs) of parasite cells were compared with those of their host plastid and mitochondrial DNA in three host and parasite pairs. For plastids, no RFLP differences were found between hosts and parasites, supporting an earlier conclusion, based on microscopic studies, that the proplastids of parasites are acquired from their hosts. For mitochondria, characteristic RFLP differences were detected between host and parasite for two of the pairs of species but not for the third. Evidence of the evolutionary difference between hosts and their parasites was shown by RFLP differences between nuclear ribosomal repeat regions.     

Protein Targeting into Secondary Plastids1

ABSTRACT. Most of the coding capacity of primary plastids is reserved for expressing some central components of the photosynthesis machinery and the translation apparatus. Thus, for the bulk of biochemical and cell biological reactions performed within the primary plastids, many nucleus‐encoded components have to be transported posttranslationally into the organelle. The same is true for plastids surrounded by more than two membranes, where additional cellular compartments have to be supplied with nucleus‐encoded proteins, leading to a corresponding increase in complexity of topogenic signals, transport and sorting machineries. In this review, we summarize recent progress in elucidating protein transport across up to five plastid membranes in plastids evolved in secondary endosymbiosis. Current data indicate that the mechanisms for protein transport across multiple membranes have evolved by altering pre‐existing ones to new requirements in secondary plastids.     

A Comparative Study on Photosynthesis Temperature Relationships and Their Seasonal Changes in Marine Benthic Algae

In each of the species examined — 4 Chlorophyceae, 7 Phaeophyceae and 4 Rhodophyceae — the optimum temperature for photosynthesis was apparently higher in summer material than in winter material. In the brown algae the optimum temperature for the apparent photosynthesis lies between 20°C and 23°C, in the green algae and in most of the red algae between 25° and 30°C. In most of the red algae the activity decreased markedly at 35°GC, while a considerable part of the green algae survived at this temperature. In 50% of the species of brown algae examined the photosynthetic activity decreased at 30°C and was completely lost at 35°C, while in the remaining species a strong resistance to high temperatures was observed.     

Purification of Plastids from the Dinoflagellate Lingulodinium

Peridinin-containing dinoflagellates are a group of generally marine and photosynthetic protists whose plastids display a number of unusual features. In particular, the plastid genome may be reduced to as few as a dozen genes, and it is not clear if all these genes are expressed. To begin to characterize the plastid proteins, we attempted to purify chloroplasts from the dinoflagellate Lingulodinium polyedrum. We tested several different protocols and found that the organelles were inherently fragile and difficult to isolate intact. In particular, standard purification protocols as described for higher plants produced only broken plastids, as judged by complete loss of the stromal protein RuBisCO. We found that small amounts of RuBisCO could be retained in the plastids if the cells were treated with cellulase prior to lysis. Finally, we report that almost all RuBisCO was retained in plastids prepared from cells subjected to a heat shock treatment, although cellular proteins were denatured by the treatment.     

Agnathan VIP, PACAP and Their Receptors: Ancestral Origins of Today's Highly Diversified Forms

VIP and PACAP are pleiotropic peptides belonging to the secretin superfamily of brain-gut peptides and interact specifically with three receptors (VPAC(1), PAC(1) and VPAC(2)) from the class II B G protein-coupled receptor family. There is immense interest regarding their molecular evolution which is often described closely alongside gene and/or genome duplications. Despite the wide array of information available in various vertebrates and one invertebrate the tunicate, their evolutionary origins remain unresolved. Through searches of genome databases and molecular cloning techniques, the first lamprey VIP/PACAP ligands and VPAC receptors are identified from the Japanese lamprey. In addition, two VPAC receptors (VPACa/b) are identified from inshore hagfish and ligands predicted for sea lamprey. Phylogenetic analyses group these molecules into their respective PHI/VIP, PRP/PACAP and VPAC receptor families and show they resemble ancestral forms. Japanese lamprey VIP/PACAP peptides synthesized were tested with the hagfish VPAC receptors. hfVPACa transduces signal via both adenylyl cylase and phospholipase C pathways, whilst hfVPACb was only able to transduce through the calcium pathway. In contrast to the widespread distribution of VIP/PACAP ligands and receptors in many species, the agnathan PACAP and VPAC receptors were found almost exclusively in the brain. In situ hybridisation further showed their abundance throughout the brain. The range of VIP/PACAP ligands and receptors found are highly useful, providing a glimpse into the evolutionary events both at the structural and functional levels. Though representative of ancestral forms, the VIP/PACAP ligands in particular have retained high sequence conservation indicating the importance of their functions even early in vertebrate evolution. During these nascent stages, only two VPAC receptors are likely responsible for eliciting functions before evolving later into specific subtypes post-Agnatha. We also propose VIP and PACAP's first functions to predominate in the brain, evolving alongside the central nervous system, subsequently establishing peripheral functions.