Responses of atmospheric methane consumption by soils to global climate change

Soils consume about 40 Tg methane from the atmosphere annually. Thus, soils contribute significantly to the atmospheric methane budget. However, responses of atmospheric methane consumption to climate change are uncertain. Predicting these responses requires an understanding of the effect on methane consumption of specific variables (temperature and soil water content) as well as interactions among parameters (methane, ammonium, water content). Key considerations involve the limitations of diffusive transport and controls of methane diffusivity; limitation of methanotrophic activity by water stress; relatively slow growth rates of methane-oxidizing bacteria on atmospheric methane; ammonium toxicity. Interactions among these parameters may be particularly important, and lead to responses contrary to those predicted from changes in temperature and water content alone. Results from a number of analyses indicate that atmospheric methane consumption is especially sensitive to anthropogenic disturbances, which typically decrease activity. Continued increases in wet and dry ammonium deposition are likely to exacerbate inhibition resulting from changes in land use. Changes in hydrological regimes could further decrease activity if dry periods increase water stress at soil depths currently colonized by methanotrophs. Future trends in the soil methane sink are likely to lead to enhanced accumulation of atmospheric methane.     

Seasonal dynamics of atmospheric methane oxidation in gray forest soils

Seasonal fluctuations in the methane flow in the soil-atmosphere system were determined for gray forest soils of Central Russia. Consumption of atmospheric methane was found to exceed methane emission in gray forest soils under forest and in agrocenosis. The average annual rates of atmospheric methane consumption by the soil under forest and in agrocenosis were 0.026 and 0.008 mg CH4-C/(m2 h), respectively. The annual rate of atmospheric methane oxidation in the gray forest soils of Moscow oblast was estimated to be 0.68 kton. Seasonal fluctuations in the methane oxidation activity were due to changes in the hydrothermal conditions and in the reserves of readily decomposable organic matter and mineral nitrogen, as well as to changes in the activity of methane oxidizers.     

Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane

Methanotroph abundance was analyzed in control and long-term nitrogen-amended pine and hardwood soils using rRNA-targeted quantitative hybridization. Family-specific 16S rRNA and pmoA/amoA genes were analyzed via PCR-directed assays to elucidate methanotrophic bacteria inhabiting soils undergoing atmospheric methane consumption. Quantitative hybridizations suggested methanotrophs related to the family Methylocystaceae were one order of magnitude more abundant than Methyloccocaceae and more sensitive to nitrogen-addition in pine soils. 16S rRNA gene phylotypes related to known Methylocystaceae and acidophilic methanotrophs and pmoA/amoA gene sequences, including three related to the upland soil cluster Alphaproteobacteria (USCalpha) group, were detected across different treatments and soil depths. Our results suggest that methanotrophic members of the Methylocystaceae and Beijerinckiaceae may be the candidates for soil atmospheric methane consumption.     

Physicochemical and biological factors affecting atmospheric methane oxidation in gray forest soils

The decline of methane oxidizing activities in gray forest soil upon its conversion into arable land was shown to be caused by major changes in biotic and physicochemical properties of soil. Using the method of immune serums, methane-oxidizing bacteria were detected in both forest and agricultural soils, but their populations differed significantly in both abundance and composition. In the forest soil, the number of methanotrophs was an order of magnitude higher than in arable soil, amounting to 3.5 × 10⁸ and 0.24 × 10⁸ cells/g soil, respectively. All methane-oxidizing bacteria identified in the forest soil belonged to the genus Methylocystis, and 94% of these were represented by a single species, M. parvus. The arable soil was dominated by type I methanotrophs (Methylobacter and Methylomonas, 67.6%), occurring along with bacteria of the genus Methylocystis. In addition, arable soil is characterized by a low content of microbial biomass, lower porosity and water resistance of soil aggregates, and the predominance of nitrogen mineralization processes over those of nitrogen immobilization. These factors can also contribute to lower rates of methane oxidation in arable soil as compared to forest soil.__________Translated from Mikrobiologiya, Vol. 74, No. 2, 2005, pp. 255–260.Original Russian Text Copyright © 2005 by Kravchenko, Semenov, Kuznetsova, Bykova, Dulov, Pardini, Gispert, Boeckx, Cleemput, Galchenko.     

Attributes of atmospheric carbon monoxide oxidation by Maine forest soils

CO, one of the most important trace gases, regulates tropospheric methane, hydroxyl radical, and ozone contents. Ten to 25% of the estimated global CO flux may be consumed by soils annually. Depth profiles for (14)CO oxidation and CO concentration indicated that CO oxidation occurred primarily in surface soils and that photooxidation of soil organic matter did not necessarily contribute significantly to CO fluxes. Kinetic analyses revealed that the apparent K(m) was about 18 nM (17 ppm) and the V(max) was 6.9 micromol g (fresh weight)(-1) h(-1); the apparent K(m) was similar to the apparent K(m) for atmospheric methane consumption, but the V(max) was more than 100 times higher. Atmospheric CO oxidation responded sensitively to soil water regimes; decreases in water content in initially saturated soils resulted in increased uptake, and optimum uptake occurred at water contents of 30 to 60%. However, extended drying led to decreased uptake and net CO production. Rewetting could restore CO uptake, albeit with a pronounced hysteresis. The responses to changing temperatures indicated that the optimum temperature for net uptake was between 20 and 25 degrees C and that there was a transition to net production at temperatures above 30 degrees C. The responses to methyl fluoride and acetylene indicated that populations other than ammonia oxidizers and methanotrophs must be involved in forest soils. The response to acetylene was notable, since the strong initial inhibition was reversed after 12 h of incubation; in contrast, methyl fluoride did not have an inhibitory effect. Ammonium did not inhibit CO uptake; the level of nitrite inhibition was initially substantial, but nitrite inhibition was reversible over time. Nitrite inhibition appeared to occur through indirect effects based on abiological formation of NO.     

Methane consumption in two temperate forest soils

Forest soils are thought to be an important sink for atmospheric methane. To evaluate methane consumption,¹⁴C-labeled methane was added to the headspace of intact soil cores collected from a mixed mesophytic forest and from a red spruce forest located in the central Appalachian Mountains. Both soils consumed the added methane at initially high rates that decreased as the methane mixing ratio of the air decreased. The mixed mesophytic forest soil consumed an average of 2 mg CH₄ m^–2 d^–1 versus 1 mg CH, m^–2 d^–1 for the spruce forest soil. The addition of acetylene to the headspace completely suppressed methane consumption by the soils, suggesting that an aerobic methane-consuming microorganism mediated the process. At both forest sites, methane mixing ratios in soil air spaces were greater than that in the air overlying the soil surface, indicating that these soils had the ability to produce methane. Models of methane emission from forest soils to the atmosphere must represent methane flux as the balance between production and consumption of methane, which are controlled by very different factors     

森林土壤甲烷吸收的主控因子及其对增氮的响应研究进展

森林土壤甲烷(CH4)吸收在生态系统碳、氮循环和碳平衡研究中具有重要作用。论述了森林土壤CH4的产生和消耗过程及其主控因子,有效氮不同的森林土壤CH4吸收对氮素输入的响应差异及其驱动机制,并且明确了现有研究的不足和未来研究的重点。研究表明:大气氮沉降输入倾向于抑制富氮森林土壤的CH4吸收,而对贫氮森林土壤CH4吸收具有显著的促进作用,其内在的氮素调控机制至今尚不明确。主要的原因是过去通过高剂量施氮试验所得出的理论难以准确地解释低水平氮沉降情景下森林土壤CH4吸收过程,有关森林土壤CH4吸收对大气氮沉降响应的微生物学机理也缺乏系统性研究。未来研究的重点是探讨森林土壤CH4物理扩散和净吸收过程对施氮类型、剂量的短期与长期响应,量化深层土壤CH4累积和消耗对表层土壤CH4吸收的贡献,揭示森林土壤CH4吸收对增氮响应的物理学与生物化学机制。另外,研究森林土壤甲烷氧化菌群落活性、结构对施氮类型和剂量的响应,阐明土壤CH4吸收与甲烷氧化菌群落组成的内在联系,有助于深入揭示森林土壤CH4吸收对增氮响应的微生物学机制。     

Heterotrophic nitrifying bacteria in acid forest soils polluted by atmospheric SO2

The occurrence of nitrification and its effectivity were investigated in 312 cultures of heterotrophic bacteria isolated from fermentation and humus horizon of soils in spruce, mountain-ash and birch forest stands at elevations of about 500 and 800 m above sea level, in relatively unimpaired areas and areas strongly influenced by SO₂ immissions. Of the isolated cultures 33—100 % could oxidize NH₄+ and NO₂ ^- to NO₃ ^-. Acidophihe cultures (pH 4.0) were more effective than neutrophilic ones (pH 6.0 and 8.0). The activity was significantly decreased in isolates from soils strongly influenced by SO₂ and those of foliated forests. Effect of elevation above sea level was less pronounced. Differences between isolates from the fermentation and humus horizons were insignificant.     

Influence of atmospheric CO2 enrichment on methane consumption in a temperate forest soil

Rates of atmospheric CH₄ consumption of soils in temperate forest were compared in plots continuously enriched with CO₂ at 200 µL L^?1 above ambient and in control plots exposed to the ambient atmosphere of 360 µL CO₂ L^?1. The purpose was to determine if ecosystem atmospheric CO₂ enrichment would alter soil microbial CH₄ consumption at the forest floor and if the effect of CO₂ would change with time or with environmental conditions. Reduced CH₄ consumption was observed in CO₂‐enriched plots relative to control plots on 46 out of 48 sampling dates, such that CO₂‐enriched plots showed annual reductions in CH₄ consumption of 16% in 1998 and 30% in 1999. No significant differences were observed in soil moisture, temperature, pH, inorganic‐N or rates of N‐mineralization between CO₂‐enriched and control plots, indicating that differences in CH₄ consumption between treatments were likely the result of changes in the composition or size of the CH₄‐oxidizing microbial community. A repeated measures analysis of variance that included soil moisture, soil temperature (from 0 to 30 cm), and time as covariates indicated that the reduction of CH₄ consumption under elevated CO₂ was enhanced at higher soil temperatures. Additionally, the effect of elevated CO₂ on CH₄ consumption increased with time during the two‐year study. Overall, these data suggest that rising atmospheric CO₂ will reduce atmospheric CH₄ consumption in temperate forests and that the effect will be greater in warmer climates. A 30% reduction in atmospheric CH₄ consumption by temperate forest soils in response to rising atmospheric CO₂ will result in a 10% reduction in the sink strength of temperate forest soils in the atmospheric CH₄ budget and a positive feedback to the greenhouse effect.     

Atmospheric methane uptake by tropical montane forest soils and the contribution of organic layers

Microbial oxidation in aerobic soils is the primary biotic sink for atmospheric methane (CH₄), a powerful greenhouse gas. Although tropical forest soils are estimated to globally account for about 28% of annual soil CH₄ consumption (6.2 Tg CH₄ year^?1), limited data are available on CH₄ exchange from tropical montane forests. We present the results of an extensive study on CH₄ exchange from tropical montane forest soils along an elevation gradient (1,000, 2,000, 3,000 m) at different topographic positions (lower slope, mid-slope, ridge position) in southern Ecuador. All soils were net atmospheric CH₄ sinks, with decreasing annual uptake rates from 5.9 kg CH₄–C ha^?1 year^?1 at 1,000 m to 0.6 kg CH₄–C ha^?1 year^?1 at 3,000 m. Topography had no effect on soil atmospheric CH₄ uptake. We detected some unexpected factors controlling net methane fluxes: positive correlations between CH₄ uptake rates, mineral nitrogen content of the mineral soil and with CO₂ emissions indicated that the largest CH₄ uptake corresponded with favorable conditions for microbial activity. Furthermore, we found indications that CH₄ uptake was N limited instead of inhibited by NH₄ ⁺. Finally, we showed that in contrast to temperate regions, substantial high affinity methane oxidation occurred in the thick organic layers which can influence the CH₄ budget of these tropical montane forest soils. Inclusion of elevation as a co-variable will improve regional estimates of methane exchange in these tropical montane forests.     

Microbial consumption of atmospheric isoprene in a temperate forest soil

Isoprene (2-methyl-1,3 butadiene) is a low-molecular-weight hydrocarbon emitted in large quantities to the atmosphere by vegetation and plays a large role in regulating atmospheric chemistry. Until now, the atmosphere has been considered the only significant sink for isoprene. However, in this study we performed both in situ and in vitro experiments with soil from a temperate forest near Ithaca, N.Y., that indicate that the soil provides a sink for atmospheric isoprene and that the consumption of isoprene is carried out by microorganisms. Consumption occurred rapidly in field chambers (672.60 +/- 30.12 to 2,718.36 +/- 86.40 pmol gdw day) (gdw is grams [dry weight] of soil; values are means +/- standard deviations). Subsequent laboratory experiments confirmed that isoprene loss was due to biological processes: consumption was stopped by autoclaving the soil; consumption rates increased with repeated exposure to isoprene; and consumption showed a temperature response consistent with biological activity (with an optimum temperature of 30 degrees C). Isoprene consumption was diminished under low oxygen conditions (120 +/- 7.44 versus 528.36 +/- 7.68 pmol gdw day under ambient O(2) concentrations) and showed a strong relationship with soil moisture. Isoprene-degrading microorganisms were isolated from the site, and abundance was calculated as 5.8 x 10 +/- 3.2 x 10 cells gdw. Our results indicate that soil may provide a significant biological sink for atmospheric isoprene.     

Radioactive fingerprinting of microorganisms that oxidize atmospheric methane in different soils.

Microorganisms that oxidize atmospheric methane in soils were characterized by radioactive labelling with (14)CH(4) followed by analysis of radiolabelled phospholipid ester-linked fatty acids ((14)C-PLFAs). The radioactive fingerprinting technique was used to compare active methanotrophs in soil samples from Greenland, Denmark, the United States, and Brazil. The (14)C-PLFA fingerprints indicated that closely related methanotrophic bacteria were responsible for the oxidation of atmospheric methane in the soils. Significant amounts of labelled PLFAs produced by the unknown soil methanotrophs coeluted with a group of fatty acids that included i17:0, a17:0, and 17:1omega8c (up to 9.0% of the total (14)C-PLFAs). These PLFAs are not known to be significant constituents of methanotrophic bacteria. The major PLFAs of the soil methanotrophs (73.5 to 89.0% of the total PLFAs) coeluted with 18:1 and 18:0 fatty acids (e.g., 18:1omega9, 18:1omega7, and 18:0). The (14)C-PLFAs fingerprints of the soil methanotrophs that oxidized atmospheric methane did not change after long-term methane enrichment at 170 ppm CH(4). The (14)C-PLFA fingerprints of the soil methanotrophs were different from the PLFA profiles of type I and type II methanotrophic bacteria described previously. Some similarity at the PLFA level was observed between the unknown soil methanotrophs and the PLFA phenotype of the type II methanotrophs. Methanotrophs in Arctic, temperate, and tropical regions assimilated between 20 and 54% of the atmospheric methane that was metabolized. The lowest relative assimilation (percent) was observed for methanotrophs in agricultural soil, whereas the highest assimilation was observed for methanotrophs in rain forest soil. The results suggest that methanotrophs with relatively high carbon conversion efficiencies and very similar PLFA compositions dominate atmospheric methane metabolism in different soils. The characteristics of the methane metabolism and the (14)C-PLFA fingerprints excluded any significant role of autotrophic ammonia oxidizers in the metabolism of atmospheric methane.     

Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake.

The global methane cycle includes both terrestrial and atmospheric processes and may contribute to feedback regulation of the climate. Most oxic soils are a net sink for methane, and these soils consume approximately 20 to 60 Tg of methane per year. The soil sink for atmospheric methane is microbially mediated and sensitive to disturbance. A decrease in the capacity of this sink may have contributed to the approximately 1%. year(-1) increase in the atmospheric methane level in this century. The organisms responsible for methane uptake by soils (the atmospheric methane sink) are not known, and factors that influence the activity of these organisms are poorly understood. In this study the soil methane-oxidizing population was characterized by both labelling soil microbiota with (14)CH(4) and analyzing a total soil monooxygenase gene library. Comparative analyses of [(14)C]phospholipid ester-linked fatty acid profiles performed with representative methane-oxidizing bacteria revealed that the soil sink for atmospheric methane consists of an unknown group of methanotrophic bacteria that exhibit some similarity to type II methanotrophs. An analysis of monooxygenase gene libraries from the same soil samples indicated that an unknown group of bacteria belonging to the alpha subclass of the class Proteobacteria was present; these organisms were only distantly related to extant methane-oxidizing strains. Studies on factors that affect the activity, population dynamics, and contribution to global methane flux of "atmospheric methane oxidizers" should be greatly facilitated by use of biomarkers identified in this study.     

Effect of soil nitrogen,carbon and moisture on methane uptake by dry tropical forest soils

Methane uptake was measured for two consecutive years for four forest and one savanna sites in a seasonally dry tropical region of India. The soils were nutrient-poor and well drained. These sites differed in vegetational cover and physico-chemical features of the soil. There were significant differences in CH₄ consumption rates during the two years (mean 0.43 and 0.49 mg m^-2 h^-1), and at different sites (mean 0.36 to 0.57 mg m^-2 h^-1). The mean uptake rate was higher (P < 0.05) in dry seasons than in the rainy season at all the sites. There was a significant season and site interaction, indicating that the effect of different seasons differed across the sites. There was a positive relation between soil moisture and CH₄ uptake rates during summer (the driest period) and a negative relation during the rest of the year. The results suggested that seasonally dry tropical forests are a strong sink for CH₄, and C and N status of soils regulates the strength of the sink in the long term.     

Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane

Forest and other upland soils are important sinks for atmospheric CH(4), consuming 20 to 60 Tg of CH(4) per year. Consumption of atmospheric CH(4) by soil is a microbiological process. However, little is known about the methanotrophic bacterial community in forest soils. We measured vertical profiles of atmospheric CH(4) oxidation rates in a German forest soil and characterized the methanotrophic populations by PCR and denaturing gradient gel electrophoresis (DGGE) with primer sets targeting the pmoA gene, coding for the alpha subunit of the particulate methane monooxygenase, and the small-subunit rRNA gene (SSU rDNA) of all life. The forest soil was a sink for atmospheric CH(4) in situ and in vitro at all times. In winter, atmospheric CH(4) was oxidized in a well-defined subsurface soil layer (6 to 14 cm deep), whereas in summer, the complete soil core was active (0 cm to 26 cm deep). The content of total extractable DNA was about 10-fold higher in summer than in winter. It decreased with soil depth (0 to 28 cm deep) from about 40 to 1 microg DNA per g (dry weight) of soil. The PCR product concentration of SSU rDNA of all life was constant both in winter and in summer. However, the PCR product concentration of pmoA changed with depth and season. pmoA was detected only in soil layers with active CH(4) oxidation, i.e., 6 to 16 cm deep in winter and throughout the soil core in summer. The same methanotrophic populations were present in winter and summer. Layers with high CH(4) consumption rates also exhibited more bands of pmoA in DGGE, indicating that high CH(4) oxidation activity was positively correlated with the number of methanotrophic populations present. The pmoA sequences derived from excised DGGE bands were only distantly related to those of known methanotrophs, indicating the existence of unknown methanotrophs involved in atmospheric CH(4) consumption.     

森林土壤氮素转换及其对氮沉降的响应

近几十年人类活动向大气中排放的含氮化合物激增 ,并引起大气氮沉降也成比例增加。目前 ,氮沉降的增加使一些森林生态系统结构和功能发生改变 ,甚至衰退。近 2 0 a欧洲和北美有关氮沉降及其对森林生态系统的影响方面的研究较多 ,而我国少有涉及。森林土壤氮素转换是森林生态系统氮素循环的一个重要的组成部分 ,而矿化、硝化和反硝化作用是其核心过程 ,氮沉降作为驱动因子势必改变森林土壤氮素转换速度、方向和通量。根据国外近 2 0 a有关研究 ,首先介绍了森林土壤氮素转换过程和强度 ,论述森林土壤氮素在生态系统氮素循环中的作用 ,然后在此基础上 ,介绍了氮沉降对森林土壤氮素循环的研究途径 ,探讨了氮沉降对森林土壤氮素矿化、硝化和反硝化作用的影响及其机理