Bayesian experimental design for nonlinear mixed-effects models with application to HIV dynamics

Bayesian experimental design is investigated for Bayesian analysis of nonlinear mixed-effects models. Existence of the posterior risk for parameter estimation is shown. When the same prior distribution is used for both design and inference, existence of the preposterior risk for design is also proven. If the prior distribution used in design is different from that used for inference, sufficient conditions are established for existence of the preposterior risk for design. A case study of design for an experiment in population HIV dynamics is provided.     

草基-鱼塘生态系统的能量转化与养分循环研究

应用模拟试验的方法,研究了“草基-鱼塘”系统中的能量转化与养分循环.结果表明,该系统中饲草对太阳能的利用率为0.83%,鱼对饲料能的转化率为7.3%.与以粮食作为鱼饲料比较,单位面积草地的产鱼当量是粮食作物的1.6倍.鱼对饲料N、P、K的转化率分别为16.8%、32.3%和2.0%.塘泥沉积的N、P分别占饲料的23.4%和56.1%;猪对饲料N、P、K的转化率分别为20.5%、33.7%和4.6%,猪粪尿回收饲料N为36.4%、P为63.8%、K为39.4%.猪-草-鱼结合的基塘系统其能量和养分转化效率均高于单一的养鱼系统.     

Age Determination of Bovine Foetuses

The need for methods for age determination of foetuses is defined. X-ray examination of the foetal head is recommended as the surest basis for age determination. Calculations are made concerning the correlation between cranial length and foetal age, and the methods used for measurements are described in detail. Measurements of the metacarpus and metatarsus may also be used, but they give a poorer correlation. A formula is worked out for age determination based on cranial measurements. On x-ray photographs, tooth development is seen to occur in an obvious sequence. This is described. However, the interpretation of these observations is subjective and requires control material for comparison. The same is true for the sequence of ossification of the skeleton, which in foetuses < 120 days gives the surest basis for evaluation. Here, too, a wide range of control material for comparison is necessary. The sequence in the appearance of body hair — development and eruption — is noted, as far as the head is concerned. This alone gives an insecure basis for evaluation. By using the 4 systems of parameters mentioned, the age of a foetus can be determined within an error of ± 4—5 days.     

草基—鱼塘生态系统的能量转化与养分循环研究

应用模拟试验的方法,研究了“草基-鱼塘”系统中的能量转化与养分循环．结果 表明,该系统中饲草对太阳能的利用率为 ０． ８３％,鱼对饲料能的转化率为 ７． ３％．与以粮 食作为鱼饲料比较,单位面积草地的产鱼当量是粮食作物的１．６倍．鱼对饲料Ｎ、Ｐ、Ｋ的 转化率分别为１６．８％、３２．３％和２．０％．塘泥沉积的Ｎ、Ｐ分别占饲料的２３．４％和５６．１％; 猪对饲料 Ｎ、 Ｐ、 Ｋ的转化率分别为 ２０． ５％、 ３３． ７％和 ４． ６％,猪粪尿回收饲料 Ｎ为 ３６． ４％、 Ｐ为 ６３． ８％、 Ｋ为 ３９． ４％．猪-草-鱼结合的基塘系统其能量和养分转化效率均高于单一的 养鱼系统．     

湖南土家族的体质特征

以20至69岁的湖南土家族人为观察测量对象,根据1392人(男896,女496)的身高,1038人(男668,女370)的头部测量,364人(男235,女129)的五官测量和观察结果,分析该民族的体质特征,并与国内其他民族相比较。     

维吾尔族的体质特征研究

１９９１年５月,对新疆伊梨维吾尔族５２９人（男２７１,女２５８）进行了活体观察和测量。观察２９项,测量９２项。维吾尔族的主要特征是：黑直发,黑褐色眼,眉毛较浓密,大都有上眼脸皱褶,鼻根中等偏高,大多为直形鼻,鼻尖向前,鼻基部下垂,大多有达尔文结节,耳垢湿型。头面部指数分型,属于特短头型,阔头型和高头型。身材中等偏高,平均身高男１６８．６毫米,女１５７８．８毫米。     

Application of a miniature biochip using the molecular beacon probe in breast cancer gene BRCA1 detection

We report for the first time the application of a biochip using the molecular beacon (MB) detection scheme. The usability of this biochip novel detection system for the analysis of the breast cancer gene BRCA1 is demonstrated using molecular beacon probes. The MB is designed for the BRCA1 gene and a miniature biochip system is used for detection. The performance of the biochip-MB detection system is evaluated. The optimum conditions for the MB system for highest fluorescence detection sensitivity are investigated for the detection system. The detection of BRCA1 gene is successfully demonstrated in solution and the limit of detection (LOD) is estimated as 70 nM.     

鼠疫菌噬菌体效价噬菌斑测定法的建立

目的建立鼠疫菌噬菌体噬菌斑效价测定方法。方法通过分析细菌接种浓度、孵育吸附时间及培养温度等参数,建立鼠疫菌噬菌体效价测定方法,并分析其精密性;建立鼠疫活疫苗鉴别及纯菌检查用噬菌体效价质量标准。结果经优化后确定细菌接种浓度为7×108/mL,不需孵育吸附,培养温度为29℃,所建立的检测方法精密性较好,用于鼠疫活疫苗鉴别及纯菌检查用噬菌体效价质量标准应不低于1×106PFU/mL。结论建立了鼠疫菌噬菌体噬菌斑效价测定方法,为鼠疫菌噬菌体及疫苗质量控制奠定了基础。     

Mitochondrial function and toxicity: role of the B vitamin family on mitochondrial energy metabolism

The B vitamins are water-soluble vitamins required as coenzymes for enzymes essential for cell function. This review focuses on their essential role in maintaining mitochondrial function and on how mitochondria are compromised by a deficiency of any B vitamin. Thiamin (B1) is essential for the oxidative decarboxylation of the multienzyme branched-chain ketoacid dehydrogenase complexes of the citric acid cycle. Riboflavin (B2) is required for the flavoenzymes of the respiratory chain, while NADH is synthesized from niacin (B3) and is required to supply protons for oxidative phosphorylation. Pantothenic acid (B5) is required for coenzyme A formation and is also essential for alpha-ketoglutarate and pyruvate dehydrogenase complexes as well as fatty acid oxidation. Biotin (B7) is the coenzyme of decarboxylases required for gluconeogenesis and fatty acid oxidation. Pyridoxal (B6), folate and cobalamin (B12) properties are reviewed elsewhere in this issue. The experimental animal and clinical evidence that vitamin B therapy alleviates B deficiency symptoms and prevents mitochondrial toxicity is also reviewed. The effectiveness of B vitamins as antioxidants preventing oxidative stress toxicity is also reviewed.     

The effect of glutamine concentration on the activity of carbamoyl-phosphate synthase II and on the incorporation of [3H]thymidine into DNA in rat mesenteric lymphocytes stimulated by phytohaemagglutinin.

The maximum catalytic activities of carbamoyl-phosphate synthase II, a limiting enzyme for pyrimidine nucleotide synthesis, are very much less than those of glutaminase, a limiting enzyme for glutamine utilization, in lymphocytes and macrophages; and the flux through the pathway for pyrimidine formation de novo is only about 0.4% of the rate of glutamine utilization by lymphocytes. The Km of synthase II for glutamine is about 16 microM and the concentration of glutamine necessary to stimulate lymphocyte proliferation half-maximally is about 21 microM. This agreement suggests that the importance of glutamine for these cells is provision of nitrogen for biosynthesis of pyrimidine nucleotides (and probably purine nucleotides). However, the glutamine concentration necessary for half-maximal stimulation of glutamine utilization (glutaminolysis) by the lymphocytes is 2.5 mM. The fact that the rate of glutamine utilization by lymphocytes is markedly in excess of the rate of the pathway for pyrimidine nucleotide synthesis de novo and that the Km and 'half-maximal concentration' values are so different, suggests that the glutaminolytic pathway is independent of the use of glutamine nitrogen for pyrimidine synthesis.     

The transmembrane nucleoporin NDC1 is required for targeting of ALADIN to nuclear pore complexes

NDC1 is a transmembrane nucleoporin that is required for NPC assembly and nucleocytoplasmic transport. We show here that NDC1 directly interacts with the nucleoporin ALADIN, mutations of which are responsible for triple-A syndrome, and that this interaction is required for targeting of ALADIN to nuclear pore complexes (NPCs). Furthermore, we show that NDC1 is required for selective nuclear import. Our findings suggest that NDC1-mediated localization of ALADIN to NPCs is essential for selective nuclear protein import, and that abrogation of the interaction between ALADIN and NDC1 may be important for the development of triple-A syndrome.     

Systematics,conservation and sustainable development

The contribution of systematics to conservation and sustainable use of species is discussed. An adequate inventory of species is required for both areas and recent field work shows that the inventory is far from complete. This supports the first mission of Agenda 2000 which is to discover described and inventory global species diversity. The importance of making these data available in data base format is stressed. Sound systematics is a necessity for conservation legislation where control depends on the ability to identify organisms correctly. The establishment of reserves is also dependent upon data from systematics about centres of diversity and endemism and examples of this are given. Molecular systematics has made new tools available to conservation such as genetic fingerprinting which is useful both to breeding programmes of rare species and for identification for legal proceedings.Systematics is also one of the foundations for programmes of sustainable development especially in the search for new crops, non-timber forest plants from extraction forests and the identification of wild relatives of crop species. Examples of the role of systematics in a fuelwood programme in Zimbabwe, a sustainable development programme in northeast Brazil and in the search for a chemical component with medicinal properties for curing AIDS are given. The more predictive a classification we can develop using modern cladistic and molecular techniques the more useful systematics will be for both conservation and sustainable development. The goal of Agenda 2000 to organize the information derived from the programme in an efficiently retrievable form that best meets the needs of science and society is a laudable target that is crucial for conservation and the sustainable use of the plant resources of the world.     

Likelihood of a particular order of genetic markers and the construction of genetic maps

We model the recombination process of fungal systems via chromatid exchange in meiosis, which accounts for any type of bivalent configuration in a genetic interval in any specified order of genetic markers, for both random spore and tetrad data. First, a probability model framework is developed for two genes and then generalized for an arbitrary number of genes. Maximum likelihood estimators (MLEs) for both random and tetrad data are developed. It is shown that the MLE of recombination for tetrad data is uniformly more efficient over that from random spore data by a factor of at least 4 usually. The MLE for the generalized probability framework is computed using the expectation-maximization (EM) algorithm. Pearson's chi-squared statistic is computed as a measure of goodness of fit using a product-multinomial setup. We implement our model with genetic marker data on the whole genome of Neurospora crassa. Simulated annealing is used to search for the best order of genetic markers for each chromosome, and the goodness of fit value is evaluated for model assumptions. Inferred map orders are corroborated by genomic sequence, with the exception of linkage groups I, II, and V.     

A general purpose computerized display and analysis system for image processing in nuclear medicine.

In this work a general purpose image processor is described, which takes into account the special features and the various requirements for analysing images in nuclear medicine. A new approach for system structure involving encoding and representing medical images is given. This encoder, which is part of the image processor, is efficient especially for long-term storage and for certain pattern recognition in medical imaging. In this processor a statistical package is incorporated for collecting medical statistics using the acquired patient data. This information is used together with the encoder for an automated diagnostic system.     

Effective Sizes and Dynamics of Uniparentally and Diparentally Inherited Genes

Models to determine the temporal dynamics and spatial heterogeneity for maternally and paternally inherited genes were derived for populations that may or may not exhibit spatial subdivision. Results were compared to those for diparentally inherited genes. The models permit definition of parameters for mean and variance of litter sizes, breeding group (subpopulation) sizes, and numbers of female mates per male, dispersal rates, and multiple paternity. Exact solutions for asymptotic effective size and spatial divergence (F(LS)) for maternal and paternal genes are derived. It is shown that solutions for effective size and F(LS) are transformations of the same quadratic equation. When compared to values for diparentally inherited genes, it is shown that effective sizes for maternal genes may be considerably higher when female dispersal is low as in many mammalian taxa. Likewise, effective sizes for paternal genes may be higher than for diparentally inherited traits when male dispersal is relatively low, as in many species of birds. The traditional assumption that the effective size for maternal genes is approximately equal to the number of females is seldom realized. Spatial heterogeneity and temporal dynamics of genes are inextricably linked as is shown by the interdependency of effective size and spatial heterogeneity.     

Statistical Testing for Seasonality in Data with Multiple Peaks and Troughs

EDWARDS'S test for seasonality is extended to multiple peaks and troughs. It is shown how the extended statistic may be adjusted for the population at risk and for unequal lengths of time intervals in the cycle of seasons. A simulation study shows that the extended test statistic is, for sample sizes N ≧ 100, very specific in detecting the number of peaks and troughs for which it is intended. The associated method of parameter estimation is also assessed; for N ≦ 100, the amplitude of a possibly adequate simple harmonic model is estimated well, but the initial value of the phase angle is not. Estimated percentage points for the extended test statistic are tabulated, and some recommendations are offered regarding usage of this method.     

On the computation of substrate levels in perfused tissues

The recent development of experimental techniques to study the isolated perfused heart and brain have renewed interest in the mathematical modeling of capillary-tissue structures. A new analytical representation is developed for the Krogh cylinder model for blood-tissue structures, and a scheme is presented for determining an asymptotic series approximation for this solution. This solution is explored for model parameters of experimental interest, and the contribution and effect of axial diffusion is demonstrated.     

Why does Escherichia coli have two primary pathways for synthesis of glutamate?

Escherichia coli has two primary pathways for glutamate synthetase-glutamate synthase pathway is known to be essential for synthesis at low ammonium concentrations and for regulation of the glutamine pool, but the necessity for glutamate dehydrogenase (GDH) has been uncertain. The results of competition experiments between the wild type and a GDH-deficient mutant during nutrient-limited growth and of direct enzyme measurements suggest that GDH is used in glutamate synthesis when the cell is limited for energy (and carbon) but ammonium and phosphate are present in excess, while the glutamine synthetase-glutamate synthase pathway is used when the cell is not under energy limitation. The use of alternative routes for glutamate synthesis implies that the energy cost of biosynthesis may be less when energy is limited than when energy is unlimited.     

Does bone mineralization reflect economic conditions? An examination using a national US sample

BACKGROUND: Bone density is the most important determinant of osteoporotic fractures, which lead to significant morbidity, disability and mortality for older persons, particularly women. Sensitive periods for bone mineralization in infancy, childhood and adolescence overlap with those for height attainment. After peak density is reached in early adulthood, there is age-related decline. We ask whether bone density, as height, reflects economic conditions. SUBJECTS AND METHODS: Using the third National Health and Nutrition Examination Survey, a probability sample of the US population which over-sampled Blacks and Mexican Americans, we examine the associations between adult bone mineral content (BMC) adjusted for bone and body size and three economic indicators: education, height and the poverty income ratio (PIR). We compare four groups: US-born Whites, Blacks and Mexican Americans and Mexican-born Mexican Americans. RESULTS: Education is positively associated with BMC only for White women, although there are similar, non-significant associations for Black women and White and Black men. For women, BMC is more strongly associated with height for Mexican Americans, especially the Mexican-born, than for Whites. For men, the only significant association is a negative one with education for men born in Mexico. PIR is not significantly associated with BMC, although there is pattern of lower income being associated with lower BMC for Whites and Blacks and higher BMC for Mexican Americans. CONCLUSION: Bone density does not reflect economic conditions as strongly or consistently as does physical stature. However, for women there is evidence that lower economic status in childhood or adolescence is associated with lower bone density.     

A surgical operating apparatus for fish and its use in the pinealectomy of salmonids

A surgical operating apparatus for fish that is effective for cranial surgery is described. The fishes are secured with clamp-arms which extend against the pectoral and pelvic girdles. The head is held by a plexiglass mouthpiece, designed specifically for the fish species under investigation. The mouthpiece is also responsible for gill irrigation. The use of the apparatus for the surgical pinealectomy of salmonids is described.