The structure of the egg-shell of Porrocaecum ensicaudatum (Nematoda: Ascaridida)

Wharton D. A. 1979. The structure of the egg-shell of Porrocaecum enslcaudatum (Nematoda: Ascaridida). International Journal for Parasltology9: 127–131. The egg-shell of Porrocaecum ensicaudatum is oval with an opercular plug at either end. The shell consists of three layers: an inner lipid layer, a middle chitinous layer and an outer vitelline layer. The vitelline layer has strands of particulate material attached to its outer surface. The chitinous layer consists of 8.5 nrn fibrils which are made up of a chitin microfibril core surrounded by a protein coat. The fibrils are oriented randomly or in parallel, there being no indication of helicoidal architecture.The chitinous layer varies in thickness to form a pattern of interconnecting ridges on the surface of the egg. This pattern presumably increases the shell's structural strength.     

On the structure of the cuticle of Mecoptera

The chitin architecture of Mecoptera cuticle is of two kinds: helicoidal and helicoidal preferred with the preferred layers being cross-plied. Comparison of both systems of terminology currently in use to differentiate the subtypes of cuticle indicates that neither provides much information about the arrangement of chitin within cuticle and that both give information only about the extent of hardening in cuticle. All of the specimens of solid cuticle broken in tension exhibited a similar fracture behaviour in which the exocuticle failed in a brittle manner and the endocuticle failed plastically. The mode of endocuticular failure is dependent upon the arrangement of chitin microfibres within this region. The ultrastructural patterns of chitin microfibres determined by electron microscopy cannot be related to current notions about the phylogenetic interrelationships among Mecoptera and the usefulness of chitin fibre arrangement as a phylogenetic tool remains an open question.     

Ultrastructure and Cytochemistry of Periostracum and Mantle Edge of Biomphalaria glabrata (Gastropoda,Basommatophora)

Abstract Three layers of different electron density can be distinguished in the periostracum. Periostracal units of up to 900 nm length are merged into the outer fibrous layer and binding of gold-labelled lectin-WGA indicates the presence of chitin because it is labile to chitinase treatment. The periostracum is formed by the epithelia of the groove and the belt at the mantle edge. The distal and basal epithelium of the groove consists mainly of type A cells with an extended Golgi apparatus and apical vesicles. The presence of peroxidase and phenol oxidase indicates a function in tanning of the periostracum. In the proximal epithelium of the groove, type B cells with protruding apices add more material for periostracum formation. Type C cells secrete single periostracal units which are formed within single vesicles or larger vacuoles. Type D cells secrete electron-dense vesicles which also contain WGA-positive material. The distal cells of the belt are characterized by predominating strands of the rER while subapical vacuoles, to some of which WGA binds, dominate in the cells of the central part. In the belt, phenol oxidase and peroxidase can be localized in cisternae of the rER and the Golgi apparatus. Numerous control incubations indicate that, indeed, two different enzymes are localized.     

A structural model of the chitin-binding domain of cuticle proteins

The nature of the interaction of insect cuticular proteins and chitin is unknown even though about half of the cuticular proteins sequenced thus far share a consensus region that has been predicted to be the site of chitin binding. We previously predicted the preponderance of beta-pleated sheet in the consensus region and proposed its responsibility for the formation of helicoidal cuticle (Iconomidou et al., Insect Biochem. Mol. Biol. 29 (1999) 285). Consequently, we have also verified experimentally the abundance of antiparallel beta-pleated sheet in the structure of cuticle proteins (Iconomidou et al., Insect Biochem. Mol. Biol. 31 (2001) 877). In this work, based on sequence and secondary structure similarity of cuticle proteins, and especially that of the consensus motif, to that of bovine plasma retinol binding protein (RBP), we propose by homology modelling an antiparallel beta-sheet half-barrel structure as the basic folding motif of cuticle proteins. This folding motif may provide the template for elucidating cuticle protein-chitin interactions in detail and reveal the precise geometrical formation of cuticle's helicoidal architecture. This predicted motif is another example where nature utilizes an almost flat protein surface covered by aromatic side chains to interact with the polysaccharide chains of chitin.     

Irregular helicoids in leech cocoon membranes

Helicoids in the cocoon membrane of leeches Theromyzon tessulatum and Erpobdella punctata comprise a twisted superposition of layers, each containing a variable number of planes formed by unidirectional fibrils. Straight fibrils intersecting at different angles were displayed in tangential sections through the cocoon wall of each species. When the sectioning angle was below a certain value (i.e., the critical angle), bow-shaped lines apparent in oblique sections were replaced by a succession of layers containing straight fibrils, permitting a direct measurement of step-angle change between successive layers in a helicoid. By this methodology, we determined that no regularities exist in the succession of step-angles or in layer thicknesses within the cocoon membranes, but that the distribution of step-angles between layers was unique for each cocoon type.     

Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR

The 37-residue amylin peptide, also known as islet amyloid polypeptide, forms fibrils that are the main peptide or protein component of amyloid that develops in the pancreas of type 2 diabetes patients. Amylin also readily forms amyloid fibrils in vitro that are highly polymorphic under typical experimental conditions. We describe a protocol for the preparation of synthetic amylin fibrils that exhibit a single predominant morphology, which we call a striated ribbon, in electron microscopy and atomic force microscopy images. Solid-state nuclear magnetic resonance (NMR) measurements on a series of isotopically labeled samples indicate a single molecular structure within the striated ribbons. We use scanning transmission electron microscopy and several types of one- and two-dimensional solid-state NMR techniques to obtain constraints on the peptide conformation and supramolecular structure in these amylin fibrils and to derive molecular structural models that are consistent with the experimental data. The basic structural unit in amylin striated ribbons, which we call the protofilament, contains four layers of parallel beta-sheets, formed by two symmetric layers of amylin molecules. The molecular structure of amylin protofilaments in striated ribbons closely resembles the protofilament in amyloid fibrils with a similar morphology formed by the 40-residue beta-amyloid peptide that is associated with Alzheimer's disease.     

The need for a constraining layer in the formation of monodomain helicoids in a wide range of biological structures

1. To be mechanically effective, supporting structures which are helicoidal need to be monodomain, with planar or concentric layers. 2. To achieve this in cholesteric liquid crystalline chemical models, a constraining surface is required. 3. The prediction which logically follows from this is that natural helicoidal systems in plant cell walls, spores, animal eggshells and cuticles need to be secreted within an initial constraining layer. 4. Evidence in support of this prediction is presented for a wide range of living systems, by reinterpretation of published work. This helps, at least partly, to explain the profusion of different kinds of layers in skeletal structures. 5. By contrast, systems lacking constraining layers have polydomain texture. 6. In plants, normal turgor pressure appears to be required for the deposition of monodomain helicoidal wall layers: reduced pressure leads to polydomain helicoid.     

cuticleDB: a relational database of Arthropod cuticular proteins

Background  

The insect exoskeleton or cuticle is a bi-partite composite of proteins and chitin that provides protective, skeletal and structural functions. Little information is available about the molecular structure of this important complex that exhibits a helicoidal architecture. Scores of sequences of cuticular proteins have been obtained from direct protein sequencing, from cDNAs, and from genomic analyses.     

Illustration of the development of bacterial cellulose bundles/ribbons by Gluconacetobacter xylinus via atomic force microscopy

The development of bacterial cellulose (BC) fibrils biosynthesized by Gluconacetobacter xylinus was investigated using atomic force microscopy (AFM). After various incubation times at 30 °C, both the length of BC fibrils and their average diameters increased significantly. After the first 2-h incubation, not only single BC microfibrils with an average diameter of 5.8?±?0.7 nm were biosynthesized but single microfibrils also began to bind with each other forming bundles. After longer incubation times of 6 h, 16 h, and 48 h, only BC bundles and ribbons or even only ribbons were detectable. The development of BC fibrils and the formation of BC bundles/ribbons along with the biosynthesis time were illustrated using AFM. Furthermore, single BC fibrils were twisted in a right-handed manner. The twisting of BC fibrils possibly promoted the formation of bigger ribbons.     

The circularization of amyloid fibrils formed by apolipoprotein C-II

Amyloid fibrils have historically been characterized by diagnostic dye-binding assays, their fibrillar morphology, and a "cross-beta" x-ray diffraction pattern. Whereas the latter demonstrates that amyloid fibrils have a common beta-sheet core structure, they display a substantial degree of morphological variation. One striking example is the remarkable ability of human apolipoprotein C-II amyloid fibrils to circularize and form closed rings. Here we explore in detail the structure of apoC-II amyloid fibrils using electron microscopy, atomic force microscopy, and x-ray diffraction studies. Our results suggest a model for apoC-II fibrils as ribbons approximately 2.1-nm thick and 13-nm wide with a helical repeat distance of 53 nm +/- 12 nm. We propose that the ribbons are highly flexible with a persistence length of 36 nm. We use these observed biophysical properties to model the apoC-II amyloid fibrils either as wormlike chains or using a random-walk approach, and confirm that the probability of ring formation is critically dependent on the fibril flexibility. More generally, the ability of apoC-II fibrils to form rings also highlights the degree to which the common cross-beta superstructure can, as a function of the protein constituent, give rise to great variation in the physical properties of amyloid fibrils.     

Polymorphism and ultrastructural organization of prion protein amyloid fibrils: an insight from high resolution atomic force microscopy

Amyloid fibrils were produced from the full-length mouse prion protein (PrP) under solvent conditions similar to those used for the generation of synthetic prions from PrP 89-230. Analysis of the ultrastructure by atomic force microscopy revealed extremely broad polymorphism in fibrils formed under a single growth condition. Fibrils varied with respect to the number of constitutive filaments and the manner in which the filaments were assembled. PrP polymerization was found to show several peculiar features: (i) the higher-order fibrils/ribbons were formed through a highly hierarchical mechanism of assembly of lower-order fibrils/ribbons; (ii) the lateral assembly proceeded stepwise; at each step, a semi-stable fibrillar species were generated, which were then able to enter the next level of assembly; (iii) the assembly of lower into higher-order fibrils occurred predominantly in a vertical dimension via stacking of ribbons on top of each other; (iv) alternative modes of lateral association co-existed under a single growth condition; (iv) the fibrillar morphology changed even within individual fibrils, illustrating that alternative modes of filament assembly are inter-convertible and thermodynamically equivalent. The most predominant fibrillar types were classified into five groups according to their height, each of which was divided in up to three subgroups according to their width. Detailed analysis of ultrastructure revealed that the fibrils of the major subtype (height 3.61(+/-0.28)nm, width 31.1(+/-2.0)nm) were composed of two ribbons, each of which was composed of two filaments. The molecular volume calculations indicated that a single PrP molecule occupied a distance of approximately 1.2 nm within a single filament. High polymorphism in fibrils generated in vitro is reminiscent of high morphological diversity of scrapie-associated fibrils isolated from scrapie brains, suggesting that polymorphism is peculiar for polymerization of PrP regardless of whether fibrils are formed in vitro or under pathological conditions in vivo.     

Helicoidal cell-wall texture in root hairs

It is shown that root hairs of most aquatic plants have a helicoidal cell-wall texture. Cell walls of root hairs of the aquatic/marshland plant Ranunculus lingua, however, have an axial microfibril alignment. The occurrence of a helicoidal wall texture is not limited to root hairs of aquatic plants: the terrestrial plant Zebrina purpusii has a helicoidal root-hair wall texture, too. With the exception of the grasses, the occurrence of root hairs with helicoidal cell walls pertains to species with predetermined root-hair-forming cells, trichoblasts. The rotation mode of the helicoid is species-specific. The average angle between fibrils of adjacent lamellae varies from 23° to 40°. In Hydrocharis morsus-ranae, cortical microtubules have a net-axial orientation and thus do not parallel nascent microfibrils. The deposition of the helicoidal cell wall is discussed.In honour of Prof. Dr. H.F Linskens (Nijmegen) on the occasion of his 65th birthday     

Organisation of wing cuticle in Locusta migratoria linnaeus,Tropidacris cristata linnaeus and Romalea microptera beauvais (Orthoptera : Acrididae)

The composite fibrous architectures of the wing cuticles of Locusta migratoria, Tropidacris (= Eutropidacris) cristata and Romalea microptera (Orthoptera : Acrididae) have been established. The wing cuticle in all the 3 species consists of: (i) an exocuticle, which is either pigmented or birefringent, and which under an electron microscope shows constantly helicoidal architecture of chitin microfibrils; (ii) endocuticle, which shows alternately birefringent and isotropic layers when sectioned transversely across the wing veins; these layers show helicoidal and unidirectional architecture, respectively of chitin microfibrils under the electron microscope. In transverse section, the chitin microfibrils appear as clear rods (2.8 nm in diameter) in a darkly stained matrix. However, in the hinge called the “claval furrow”, these microfibrils are considerably larger, being 25 nm in diameter. This presumably gives sufficient hardness to the claval hinge, which is the most vulnerable area for wear and tear during flight. The pore canals follow the parabolic pattern of microfibrils in the helicoidal layer, but remain straight in the unidirectional layers. The thickness of wing cuticle increases up to about 10–12 days, the time at which the acridids most probably attain the optimum flight ability. It is suggested that changes in the wing cuticle are related to increased wing beat frequency and speed of flight with age, and may help in resisting the simultaneous increase in the bending and twisting forces on the wing.     

THE MANTLE AND SHELL OF SOLEMYA PARKINSONI (PROTOBRANCHIA: BIVALVIA)

The shell of Solemya exhibits considerable flexibility which is further enhanced by the marked extension of the periostracum beyond the calcareous portions of the valves. This fcature, more than any other, has made possible the habit, unique among bivalves, of burrowing deep within the substrate without direct contact with the water above. The inner calcareous layer of tho valves is restricted to a small area near the umbones while the outer calcareous layer is thin and contains a high proportion of organic material. The shell conchiolin consists mainly of protein, varying in composition, but much of it strengthcned by quinone-tanning, and in ccrtain regions probably by the presence of appreciable quantities of chitin. The ligament, although superficially resembling an amphidetic structure, is opisthodetic, the extcnsion anterior to the umbones consisting of anterior outer layer only.
The mantle is characterized by an extension of the outer fold of the mantle margin which has effected equally both the inner and outer surfaces of this fold. The secretory epithelium and the modified pallial musculature, contraction of which results in the intucking and plaiting of the periostracum, is dcscribed. Simple tubular oil glands open at the mantlo margin and are responsible for the water-repellent nature of the periostracum.
The form of the mantlelshell and that of the enclosed body are discussed and compared with those of other bivalves in which elongation of the mantle/shell is achieved in a different way. It is concluded that the mantlelshell of Solemya is of little value in determining its relationships, and that the greatly elongatod ligament, the edentulous hinge and the flexible shell are all adaptations to a specialized mode of life.     

The dynamics of exoskeletal-epidermal structure during molt in juvenile lobster by electron microscopy and electron spectroscopic imaging

The exoskeletal-epidermal complex of juvenile lobsters at various stages throughout the molt cycle was examined by conventional electron microscopy, freeze-etch replicas, and electron spectroscopic imaging. This latter technique which enables the direct localization of atomic elements superimposed over morphological fine structure has been applied to this tissue complex to determine the spatial distributions and interrelationships of calcium, phosphorus, and sulphur. Chitin microfibril assembly is visualized in thin sections as occurring at the surface of apical membrane plaques which in freeze-etch replicas invariably possess a rich distribution of intramembrane particles on both P and E faces. In early stages of mineralization the exo- and endocuticular zones of the exoskeleton possess a dense Ca-containing lamellar repeat. These bands are unrelated to the helicoidal arrangement of chitin microfibrils. At later stages of development mineral deposits occur within the exocuticle and advance through to the endocuticle. These deposits align with chitin microfibrils and exhibit a helicoidal pattern. Morphological and chemical alterations associated with mineralization and demineralization of the exoskeleton are discussed.     

Is beta-pleated sheet the molecular conformation which dictates formation of helicoidal cuticle?

Over 100 sequences for cuticular proteins are now available, but there have been no formal analyses of how these sequences might contribute to the helicoidal architecture of cuticle or to the interaction of these proteins with chitin. A secondary structure prediction scheme (Hamodrakas, S.J., 1988. A protein secondary structure prediction scheme for the IBM PC and compatibles. CABIOS 4, 473-477) that combines six different algorithms predicting alpha-helix, beta-strands and beta-turn/loops/coil has been used to predict the secondary structure of chorion proteins and experimental confirmation has established its utility (Hamodrakas, S.J., 1992. Molecular architecture of helicoidal proteinaceous eggshells. In: Case, S.T. (Ed.), Results and Problems in Cell Differentiation, Vol. 19, Berlin-Heidelberg, Springer Verlag, pp. 116-186 and references therein). We have used this same scheme with eight cuticular protein sequences associated with hard cuticles and nineteen from soft cuticles. Secondary structure predictions were restricted to a conserved 68 amino acid region that begins with a preponderance of hydrophilic residues and ends with a 33 amino acid consensus region, first identified by Rebers and Riddiford (Rebers, J.F., Riddiford, L.M., 1988. Structure and expression of a Manduca sexta larval cuticle gene homologous to Drosophila cuticle genes. J. Mol. Biol. 203, 411-423). Both classes of sequences showed a preponderance of beta-pleated sheet, with four distinct strands in the proteins from 'hard' cuticles and three from 'soft'. In both cases, tyrosine and phenylalanine were found on one face within a sheet, an optimal location for interaction with chitin. We propose that this beta-sheet dictates formation of helicoidal cuticle.     

Mass distribution and spatial organization of the linear bacterial motor of Spiroplasma citri R8A2

In the simple, helical, wall-less bacterial genus Spiroplasma, chemotaxis and motility are effected by a linear, contractile motor arranged as a flat cytoskeletal ribbon attached to the inner side of the membrane along the shortest helical line. With scanning transmission electron microscopy and diffraction analysis, we determined the hierarchical and spatial organization of the cytoskeleton of Spiroplasma citri R8A2. The structural unit appears to be a fibril, approximately 5 nm wide, composed of dimers of a 59-kDa protein; each ribbon is assembled from seven fibril pairs. The functional unit of the intact ribbon is a pair of aligned fibrils, along which pairs of dimers form tetrameric ring-like repeats. On average, isolated and purified ribbons contain 14 fibrils or seven well-aligned fibril pairs, which are the same structures observed in the intact cell. Scanning transmission electron microscopy mass analysis and sodium dodecyl sulfate-polyacrylamide gel electrophoresis of purified cytoskeletons indicate that the 59-kDa protein is the only constituent of the ribbons.     

The glucan–chitin complex in Saccharomyces cerevisiae. IV. The electron diffraction of crustacean and yeast cell wall chitin

Crustacean and yeast cell wall chitin were analyzed by means of transmission electron microscopy and selected-area diffraction. Single fibrils 8–25 nm wide have been observed in the micrographs of crustacean chitin. Analysis of a series of diffraction patterns obtained from thin crustacean chitin platelets yielded results which were in a better agreement with the theoretical structural model than those measured earlier. In this respect electron diffraction is shown to be superior to the more commonly used x-ray diffraction. Yeast cell wall chitin had a less perfect structure than the crustacean chitin. Single fibrils were not observed on the micrographs and electron diffraction patterns did not show any preferred fiber orientation. The evaluation of electron-diffraction patterns of both the primary septum and the adjacent circular zone of scar ring led to the conclusion that α-chitin is present in both these parts of the mother bud scar.     

Some mechanical properties of crossed fibrillar chitin

The sclerites of P. sinuata consist of crossed reticulate layers of chitin fibrils arranged in the preferred orientation together with protein glues. Stretched beetle whole cuticle and chitin obey Hooke's law in the elastic region. Anisotropic swelling in a sclerite ensures flexibility and prevents sliding in the plane surface. Chitin micelle orientation can be strain-induced in vitro. Although two-phase materials, neither beetle nor locust cuticle meet the requirements of plywood mechanics.     

YB-1 is capable of forming extended nanofibrils

Here we are the first to report that multifunctional Y-box binding protein 1 (YB-1) forms extended fibrils with a diameter of 15–20 nm. The YB-1 fibrils were visualized by atomic force and electron microscopy after 1-h incubation in solution with 2 M LiCl. Their length grew with incubation time and could exceed 10 μm; their shape is helical or zigzag-like. They possess polarity and tend to associate with one another to give structures of a higher order, like ribbons or bundles. The YB-1 fibrillar architecture has a distinct periodicity with a repeat unit of about 52 nm.