Can they dig it? Functional morphology and semifossoriality among small‐eared shrews,genus Cryptotis (Mammalia,Soricidae)

Small‐eared shrews (Mammalia: Soricidae: Cryptotis), exhibit modifications of the forelimb skeleton that have been interpreted as adaptations for semifossoriality. Most species inhabit remote regions, however, and their locomotory and foraging behaviors remain mostly speculative. To better understand the morphological modifications in the absence of direct observations, we quantified variation in these species by measuring 151 individuals representing 18 species and populations of Cryptotis and two species of moles (Talpidae) for comparison. From our measurements, we calculated 22 indices, most of which have been used previously to characterize substrate use among rodents and other taxa. We analyzed the indices using 1) average percentile ranks, 2) principal components analysis, and 3) cluster analysis. From these analyses, we determined that three basic modes of substrate adaptation are present within Cryptotis: 1) a primarily terrestrial mode, with species that are capable of burrowing, but lack adaptations to increase digging efficiency, 2) a semifossorial mode, with species whose forelimbs bones show strong muscle attachment areas and increased mechanical advantage, and 3) an intermediate mode. In addition to identifying new morphological characters and contributing to our understanding of the functional morphology of soricids, these analyses provide additional insight into the ecology of the species of interest. J. Morphol. 275:745–759, 2014. © 2014 Wiley Periodicals, Inc.     

What explains patterns of species richness? The relative importance of climatic‐niche evolution,morphological evolution,and ecological limits in salamanders

A major goal of evolutionary biology and ecology is to understand why species richness varies among clades. Previous studies have suggested that variation in richness among clades might be related to variation in rates of morphological evolution among clades (e.g., body size and shape). Other studies have suggested that richness patterns might be related to variation in rates of climatic‐niche evolution. However, few studies, if any, have tested the relative importance of these variables in explaining patterns of richness among clades. Here, we test their relative importance among major clades of Plethodontidae, the most species‐rich family of salamanders. Earlier studies have suggested that climatic‐niche evolution explains patterns of diversification among plethodontid clades, whereas rates of morphological evolution do not. A subsequent study stated that rates of morphological evolution instead explained patterns of species richness among plethodontid clades (along with “ecological limits” on richness of clades, leading to saturation of clades with species, given limited resources). However, they did not consider climatic‐niche evolution. Using phylogenetic multiple regression, we show that rates of climatic‐niche evolution explain most variation in richness among plethodontid clades, whereas rates of morphological evolution do not. We find little evidence that ecological limits explain patterns of richness among plethodontid clades. We also test whether rates of morphological and climatic‐niche evolution are correlated, and find that they are not. Overall, our results help explain richness patterns in a major amphibian group and provide possibly the first test of the relative importance of climatic niches and morphological evolution in explaining diversity patterns.     

Is there a correlation between abundance and environmental suitability derived from ecological niche modelling? A meta‐analysis

It is thought that species abundance is correlated with environmental suitability and that environmental variables, scale, and type of model fitting can confound this relationship. We performed a meta‐analysis to 1) test whether species abundance is positively correlated with environmental suitability derived from correlative ecological niche models (ENM), 2) test whether studies encompassing large areas within a species range (> 50%) exhibited higher AS correlations than studies encompassing small areas within a species range (< 50%), 3) assess which modelling method provided higher AS correlation, and 4) compare strength of the AS relationship between studies using only climatic variables and those that used both climatic and other environmental variables to derive suitability. We used correlation coefficients to measure the relationship between abundance and environmental suitability derived from ENM. Each correlation coefficient was considered an effect size in a random‐effects multivariate meta‐analysis. In all cases we found a significantly positive relationship between abundance and suitability. This relationship was consistent regardless of scale of study, ENM method, or set of variables used to derive suitability. There was no difference in strength of correlation between studies focusing on large or small areas within a species’ range or among ENM methods. Studies using other variables in combination with climate exhibited higher AS correlations than studies using only climatic variables. We conclude that occurrence data can be a reasonable proxy for abundance, especially for vertebrates, and the use of local variables increases the strength of the AS relationship. Use of ENMs can significantly decrease survey costs and allow the study of large‐scale abundance patterns using less information. Including only climatic variables in ENM may confound the relationship between abundance and suitability when compared to studies including variables taken locally. However, modelers and conservationists must be aware that high environmental suitability does not always indicate high abundance.     

Bones and genes: resolution problems in three Vietnamese species of Crocidura (Mammalia,Soricomorpha, Soricidae) and the description of?an?additional new species

Recent investigations of Southeast Asian white toothed shrews belonging to the genus Crocidura have revealed discrepancies between the results of morphological and molecular studies. The following study concerns three species of Crocidura occurring in Vietnam, namely Crocidura attenuata, Crocidura tanakae and Crocidura wuchihensis, and an undescribed fourth species revealed by molecular analysis. For many years Crocidura attenuata has been known to occur in Vietnam but, until very recently, the morphologically similar and comparably sized Crocidura tanakae was believed to be restricted to Taiwan. Following several molecular studies over the last few years, this species is now believed to be considerably more widespread and recognised as occuring also in Vietnam. The results of one of these recent molecular studies also revealed the presence of an undescribed species of Crocidura, similar in size and morphology to Crocidura wuchihensis, which is herein described. Data are provided on geographical variation in Vietnam and the problems of defining morphologically similar yet molecularly disparate species are discussed.     

To mdivi‐1 or not to mdivi‐1: Is that the question?

The fission/division and fusion of mitochondria are fundamental aspects of mitochondrial biology. The balance of fission and fusion sets the length of mitochondria in cells to serve their physiological requirements. The fission of mitochondria is markedly induced in many disease states and in response to cellular injury, resulting in the fragmentation of mitochondria into dysfunctional units. The mechanism that drives fission is dependent on the dynamin related protein 1 (Drp1) GTPase. mdivi‐1 is a quinazolinone originally described as a selective inhibitor of Drp1, over other dynamin family members, and reported to inhibit mitochondrial fission. A recent study has challenged the activity of mdivi‐1 as an inhibitor of Drp1. This study raises serious issues regarding the interpretation of data addressing the effects of mdivi‐1 as reflective of the inhibition of Drp1 and thus fission. This commentary considers the evidence for and against mdivi‐1 as an inhibitor of Drp1 and presents the following considerations; (1) the activity of mdivi‐1 toward Drp1 GTPase activity requires further biochemical investigation, (2) as there is a large body of literature using mdivi‐1 in vitro with effects as predicted for inhibition of Drp1 and mitochondrial fission, reviewed herein, the evidence is in favor of mdivi‐1's originally described bioactivity, and (3) until the issue is resolved, experimental interpretations for the effects of mdivi‐1 on inhibition of fission in cell and tissue experiments warrants stringent positive controls directly addressing the effects of mdivi‐1 on fission. © 2017 Wiley Periodicals, Inc. Develop Neurobiol 77: 1260–1268, 2017     

Is applied nucleation a straightforward,cost‐effective forest restoration approach? Counter‐response to Holl and Zahawi (2018)

Holl and Zahawi (2018) agree on a number of approaches that we describe in a local case study of tropical montane cloud forest restoration in Mexico. However, they contend our argument that most applied nucleation projects have taken place in tropical lowlands as a mistake. They also provide data on the per‐hectare cost of restoration projects in Costa Rica and compare it to a higher cost figure of plantation‐style reforestation, a view contrary to ours. Last, Holl and Zahawi recognize that applied nucleation requires specialized personnel, but imply that the amount of training needed for this endeavor is not very different than what is required to implement other forest recovery projects. In this counter‐response, we provide some refinements to our original opinion and offer further information in support to our perspective.     

Is <Emphasis Type="Italic">Gammarus tigrinus</Emphasis> (Crustacea,Amphipoda) becoming cosmopolitan through shipping? Predicting its potential invasive range using ecological niche modeling

While the intensity of global shipping has increased dramatically over the last decades, species exchange between continents has likewise intensified. Ballast water of ships is recognized playing a major role in this process. Many of the larger sea ports have become bridgeheads for invasions. Ecological niche modeling is used to investigate the potential invasive range and high invasive risk ports of the North American amphipod Gammarus tigrinus. Sixty-two occurrences of G. tigrinus in its native range (North America) and 34 environmental data sets were compiled. Data on dispersal distances were used via ecological niche modeling to analyze the invasive potential of G. tigrinus. The invasive risk of large ports was analyzed according to modeling result, as well as their salinity in the main oceanic routes of the world. G. tigrinus had a rapid range extension on the British Isles and in the rest of Western Europe. Now it is invading the countries surrounding the Baltic Sea. Worldwide it has a vast potential invasive range. It has a high invasive risk for many large ports along the main oceanic routes, among which the ports of Shanghai, Buenos Aires and Montevideo have the highest invasive risk. G. tigrinus may become cosmopolitan through shipping, and this possibility is increasing. Particular emphasis should be placed on preventing human-mediated dispersal. Ports may be the first places G. tigrinus invades. This study can identify high invasive risk ports, especially those at risk of introduced North America species. More importantly, the water of large ports should be monitored regularly for exotic aquatic organisms that may survive temporarily or permanently.     

Review: To be or not to be an identifiable model. Is this a relevant question in animal science modelling?

What is a good (useful) mathematical model in animal science? For models constructed for prediction purposes, the question of model adequacy (usefulness) has been traditionally tackled by statistical analysis applied to observed experimental data relative to model-predicted variables. However, little attention has been paid to analytic tools that exploit the mathematical properties of the model equations. For example, in the context of model calibration, before attempting a numerical estimation of the model parameters, we might want to know if we have any chance of success in estimating a unique best value of the model parameters from available measurements. This question of uniqueness is referred to as structural identifiability; a mathematical property that is defined on the sole basis of the model structure within a hypothetical ideal experiment determined by a setting of model inputs (stimuli) and observable variables (measurements). Structural identifiability analysis applied to dynamic models described by ordinary differential equations (ODEs) is a common practice in control engineering and system identification. This analysis demands mathematical technicalities that are beyond the academic background of animal science, which might explain the lack of pervasiveness of identifiability analysis in animal science modelling. To fill this gap, in this paper we address the analysis of structural identifiability from a practitioner perspective by capitalizing on the use of dedicated software tools. Our objectives are (i) to provide a comprehensive explanation of the structural identifiability notion for the community of animal science modelling, (ii) to assess the relevance of identifiability analysis in animal science modelling and (iii) to motivate the community to use identifiability analysis in the modelling practice (when the identifiability question is relevant). We focus our study on ODE models. By using illustrative examples that include published mathematical models describing lactation in cattle, we show how structural identifiability analysis can contribute to advancing mathematical modelling in animal science towards the production of useful models and, moreover, highly informative experiments via optimal experiment design. Rather than attempting to impose a systematic identifiability analysis to the modelling community during model developments, we wish to open a window towards the discovery of a powerful tool for model construction and experiment design.     

Will all species with temperature‐dependent sex determination respond the same way to climate change? A reply to Kallimanis (2010)

Recently, Kallimanis (2010) published a paper proposing a mechanism by which temperature‐dependent sex determination (TSD) may play a key role at facilitating species with this strategy to track their climatic niches across space under climate change. Kallimanis hypothesized that TSD species currently inhabiting stable climatic conditions show reduced population growth rates at the edges of their distributional ranges; under warming conditions, these populations will experience faster growth rates and thus are able to colonize new suitable sites. These ideas are based on the assumption that populations of TSD species have balanced sex ratios at the core of their geographic ranges and biased proportions at the edges. However, Kallimanis’ model overlooks complex processes that may produce a more broadly and less predictable aftermath of climate change on TSD species, so we discuss some of his postulates and underlying assumptions. Kallimanis’ model is based only on one of three known TSD strategies in reptiles, thus it lacks generality; and it does not consider the phenological, behavioral, and physiological strategies that TSD species exhibit across their geographic ranges to buffer the potential impacts of climatic variation over the whole reproductive process. We conclude that simple models such as the one proposed by Kallimanis are not broadly applicable; hence, forecasts of TSD species’ responses to climate change will need to be more specific to groups with similar ecologies and modes of TSD.     

A new species of Lathrolestes (Hymenoptera,Ichneumonidae) from Ecuadorian Amazonia,with?a?key?to the Neotropical species of the genus

Here we describe and illustrate a new parasitoid wasp species, Lathrolestes gauldi sp. n. from the lowland rainforest of eastern Ecuador and provide a key to the Neotropical species of the genus. This is the first record of the subfamily Ctenopelmatinae from Ecuador.     

Why species composition is not a good indicator to assess restoration success? Counter‐response to Reid (2015)

The absence of species composition among the indicators of restoration success, recommended for the Brazilian Atlantic Forest by Suganuma and Durigan, was criticized by Reid. In his critic, Reid argues that species composition can be (1) predictable from site history and restoration technique and (2) a surrogate for poor ecosystem functioning and lack of resilience. We disagree on the deterministic view behind the first argument, and the latter is still controversial. Even though, we recommended richness as a good indicator of ecosystem functioning instead of composition—which depends on the exhaustive labor of botanical identification.     

A new species of Scelidopetalon Delkeskamp (Coleoptera,Erotylidae) from China with a?key?to?world species of the genus

A new species Scelidopetalon biwenxuanisp. n. is described from China, representing the first occurrence of the genus in Hainan province. A key to the world species of this genus is provided.     

The phylogeny and limits of Elateridae (Insecta,Coleoptera): is there a common tendency of click beetles to soft‐bodiedness and neoteny?

Kundrata, R. & Bocak, L. (2011). The phylogeny and limits of Elateridae (Insecta, Coleoptera): is there a common tendency of click beetles to soft‐bodiedness and neoteny? —Zoologica Scripta, 40, 364–378. Phylogenetic relationships in Elateroidea were investigated using partial 18S and 28S rDNA and rrnl and cox1 mtDNA sequences with special interest in the phylogeny of Elateridae and the position of soft‐bodied lineages Drilidae and Omalisidae that had been classified as families in the cantharoid lineage of Elateroidea until recently. Females in these groups are neotenic and almost completely larviform (Drilidae) or brachypterous (Omalisidae). The newly sequenced individuals of Elateridae, Drilidae, Omalisidae and Eucnemidae were merged with previously published datasets and analysed matrices include either 155 taxa with the complete representation of fragments or 210 taxa when some fragments were missing. The main feature of inferred phylogenetic trees was the monophyly of Phengodidae + Rhagophthalmidae + Omalisidae + Elateridae + Drilidae with Omalisidae regularly occupying a basal node in the group; Drilidae were embedded as a terminal lineage in the elaterid subfamily Agrypninae and soft‐bodied Cebrioninae were a part of Elaterinae. The soft‐bodied males and incompletely metamorphosed females originated at least three times within the wider Elateridae clade. Their atypical morphology has been considered as a result of long evolutionary history and they were given an inappropriately high rank in the previous classifications. The frequent origins of these modifications seem to be connected with modifications of the hormonal regulation of the metamorphosis. The superficial similarity with other soft‐bodied lineages, such as Cantharidae, Lycidae, Lampyridae, Phengodidae and Rhagophthalmidae is supposed to be a result of homoplasious modifications of the ancestral elateroid morphology due to the incomplete metamorphosis. The results of phylogenetic analyses are translated in the formal taxonomic classification. Most Drilidae are placed in Elateridae as a tribe Drilini in Agrypninae, whilst Pseudeuanoma and Euanoma are transferred from Drilidae to Omalisidae. The subfamily Cebrioninae is placed in Elaterinae as tribes Cebrionini and Aplastini. Oxynopterini, Pityobiini and Semiotini are lowered from the subfamily rank to tribes and classified in Denticollinae.     

Is resource partitioning the key? The role of intra‐interspecific variation in coexistence among five small endemic fish species (Characidae) in subtropical rivers

This study focused on intra and interspecific variations in the diet of small species in the Pelotas River, upper Uruguay River ecoregion. We tested the hypothesis that five small characids coexist via resource partitioning. Samplings were performed quarterly between August 2013 and May 2014 at 14 sites in the Pelotas River basin, using gillnets of different mesh sizes, seines, cast nets and electrofishing. In this study, the contents of 1,253 stomachs were analysed from Astyanax dissensus, A. paris, A. saguazu, A. xiru and Bryconamericus patriciae. The main food resources consumed were aquatic insects, leaves, seeds and detritus. There were significant seasonal intra and interspecific variations in the use of food resources by the five species. Permutational analysis of multivariate dispersions results indicated significant differences in individual intraspecific variability between the sampled periods, with the highest values found in November and February because of an increase in allochthonous resources (leaves and seeds). Besides this, significant differences in the proportions of consumption of allochthonous and autochthonous were observed. The trophic niche breadth was significantly different among the species, such that in August, the species had narrower niche breadths. In the other periods, the highest niche breadth values were due to an increase in the consumption of allochthonous items. Diet overlap was low (< 0.4) between 62% of the species pairs. The small characid species showed pronounced changes in resource use and intra and interspecific variations indicating resource partitioning. These factors appear to be essential in species interactions and for coexistence.     

A new species of Nicon Kinberg, 1866 (Polychaeta,Nereididae) from Ecuador,Eastern Pacific,with a?key?to?all known?species?of the genus

A new species of Nicon Kinberg, 1866 from the east Pacific coast of Ecuador is described. The new species is characterized by a long, thin dorsal ligule on median and posterior parapodia and infracicular sesquigomph falcigers in the neuropodia. A key to all species of Nicon is provided.     

Global meta‐analysis of wood decomposition rates: a role for trait variation among tree species?

The carbon flux from woody debris, a crucial uncertainty within global carbon-climate models, is simultaneously affected by climate, site environment and species-based variation in wood quality. In the first global analysis attempting to explicitly tease out the wood quality contribution to decomposition, we found support for our hypothesis that, under a common climate, interspecific differences in wood traits affect woody debris decomposition patterns. A meta-analysis of 36 studies from all forested continents revealed that nitrogen, phosphorus, and C : N ratio correlate with decomposition rates of angiosperms. In addition, gymnosperm wood consistently decomposes slower than angiosperm wood within common sites, a pattern that correlates with clear divergence in wood traits between the two groups. New empirical studies are needed to test whether this difference is due to a direct effect of wood trait variation on decomposer activity or an indirect effect of wood traits on decomposition microsite environment. The wood trait–decomposition results point to an important role for changes in the wood traits of dominant tree species as a driver of carbon cycling, with likely feedback to atmospheric CO₂ particularly where angiosperm species replace gymnosperms regionally. Truly worldwide upscaling of our results will require further site-based multi-species wood trait and decomposition data, particularly from low-latitude ecosystems.     

Species as family resemblance concepts: The (dis‐)solution of the species problem?

The so-called "species problem" has plagued evolutionary biology since before Darwin's publication of the aptly titled Origin of Species. Many biologists think the problem is just a matter of semantics; others complain that it will not be solved until we have more empirical data. Yet, we don't seem to be able to escape discussing it and teaching seminars about it. In this paper, I briefly examine the main themes of the biological and philosophical literatures on the species problem, focusing on identifying common threads as well as relevant differences. I then argue two fundamental points. First, the species problem is not primarily an empirical one, but it is rather fraught with philosophical questions that require-but cannot be settled by-empirical evidence. Second, the (dis-)solution lies in explicitly adopting Wittgenstein's idea of "family resemblance" or cluster concepts, and to consider species as an example of such concepts. This solution has several attractive features, including bringing together apparently diverging themes of discussion among biologists and philosophers. The current proposal is conceptually independent (though not incompatible) with the pluralist approach to the species problem advocated by Mishler, Donoghue, Kitcher and Dupré, which implies that distinct aspects of the species question need to be emphasized depending on the goals of the researcher. From the biological literature, the concept of species that most closely matches the philosophical discussion presented here is Templeton's cohesion idea.     

Recovery after African Olive invasion: can a ‘bottom‐up’ approach to ecological restoration work?

African Olive (Olea europaea ssp. cuspidata) is a densely crowned evergreen small tree, native to eastern Africa that is highly invasive in areas where it has been introduced, including Hawaii and Australia. Invasion by African Olive threatens Cumberland Plain Woodland, a critically endangered grassy eucalypt woodland from western Sydney, Australia, through the formation of a dense mid‐canopy excluding the regeneration of native species. We established a 3‐year field experiment to determine the effectiveness of direct seeding and fire, as techniques for early stage restoration of a 2 ha historically cleared and degraded Cumberland Plain Woodland site after the removal of African Olive. Direct seeding was able to re‐establish a native perennial grass cover which was resistant to subsequent weed invasion and could be managed as an important first stage in woodland restoration with fire and selective herbicide. Fire was able to stimulate some germination of colonising native species from the soil seed bank after 15 years of African Olive invasion; however, germination and establishment of native shrubs from the applied seed mix was poor. We propose a ‘bottom‐up’ model of ecological restoration in such highly degraded sites that uses a combination of direct seeding and stimulation of the soil seed bank by fire, which could be applicable to other degraded grassy woodland sites and plant communities.     

Is it possible to distinguish alien species of beetles (Coleoptera) from native ones?

Species established outside their native ranges are termed alien. Biological invasions of beetles are poorly studied. Distinguishing between alien and native species is necessary for conservation as well as for taxonomic, zoogeographic, and evolutionary studies. It constitutes a difficult problem, but the experience of botany and some branches of zoology gives reasons to believe that it is not unsolvable. The following criteria for distinguishing alien beetle species from native ones are proposed based on the criteria developed for plants, algae, mammals, and marine invertebrates: (1) detection of an established population of the species which has not been recorded earlier in the region; (2) disjunction of the range which cannot be explained by disjunction of suitable landscapes or host plant ranges; (3) expansion of a part of the range isolated from its main part; (4) highly localized distribution in an area adjacent to a known invasion pathway; (5) establishment in other regions; (6) dependency on another non-native species (feeding on an alien host plant or animal); (7) absence of specific parasites in the given region and their presence in some other region; (8) association with anthropogenic biotopes; (9) sharp fluctuations of abundance; (10) lack of taxonomically close species in the given region and their presence in other regions; (11) detection in the region of two or more taxonomically and/or ecologically close species typical of another region; (12) presence of known vectors of invasion; (13) low genetic diversity; (14) reproduction by parthenogenesis or inbreeding. These criteria are mere indirect evidences of the alien status of a species in the given territory, because numerous exceptions exist. Usually it is impossible to recognize an alien species by a single criterion, but matching several criteria characterizes the species as an alien one with high probability.