Distribution of mtDNA haplogroup X among Native North Americans.

Mitochondrial DNA (mtDNA) samples of 70 Native Americans, most of whom had been found not to belong to any of the four common Native American haplogroups (A, B, C, and D), were analyzed for the presence of Dde I site losses at np 1715 and np 10394. These two mutations are characteristic of haplogroup X which might be of European origin. The first hypervariable segment (HVSI) of the non-coding control region (CR) of mtDNA of a representative selection of samples exhibiting these mutations was sequenced to confirm their assignment to haplogroup X. Thirty-two of the samples exhibited the restriction site losses characteristic of haplogroup X and, when sequenced, a representative selection (n = 11) of these exhibited the CR mutations commonly associated with haplogroup X, C --> T transitions at np 16278 and 16223, in addition to as many as three other HVSI mutations. The wide distribution of this haplogroup throughout North America, and its prehistoric presence there, are consistent with its being a fifth founding haplogroup exhibited by about 3% of modern Native Americans. Its markedly nonrandom distribution with high frequency in certain regions, as for the other four major mtDNA haplogroups, should facilitate establishing ancestor/descendant relationships between modern and prehistoric groups of Native Americans. The low frequency of haplogroups other than A, B, C, D, and X among the samples studied suggests a paucity of both recent non-Native American maternal admixture in alleged fullblood Native Americans and mutations at the restriction sites that characterize the five haplogroups as well as the absence of additional (undiscovered) founding haplogroups.     

Patterns of mtDNA diversity in northwestern North America

The mitochondrial DNA (mtDNA) haplogroups of 54 full-blooded modern and 64 ancient Native Americans from northwestern North America were determined. The control regions of 10 modern and 30 ancient individuals were sequenced and compared. Within the Northwest, the frequency distribution for haplogroup A is geographically structured, with haplogroup A decreasing with distance from the Pacific Coast. The haplogroup A distribution suggests that a prehistoric population intrusion from the subarctic and coastal region occurred on the Columbia Plateau in prehistoric times. Overall, the mtDNA pattern in the Northwest suggests significant amounts of gene flow among Northwest Coast, Columbia Plateau, and Great Basin populations.     

Origin and diffusion of mtDNA haplogroup X

A maximum parsimony tree of 21 complete mitochondrial DNA (mtDNA) sequences belonging to haplogroup X and the survey of the haplogroup-associated polymorphisms in 13,589 mtDNAs from Eurasia and Africa revealed that haplogroup X is subdivided into two major branches, here defined as “X1” and “X2.” The first is restricted to the populations of North and East Africa and the Near East, whereas X2 encompasses all X mtDNAs from Europe, western and Central Asia, Siberia, and the great majority of the Near East, as well as some North African samples. Subhaplogroup X1 diversity indicates an early coalescence time, whereas X2 has apparently undergone a more recent population expansion in Eurasia, most likely around or after the last glacial maximum. It is notable that X2 includes the two complete Native American X sequences that constitute the distinctive X2a clade, a clade that lacks close relatives in the entire Old World, including Siberia. The position of X2a in the phylogenetic tree suggests an early split from the other X2 clades, likely at the very beginning of their expansion and spread from the Near East.     

Spatial and temporal patterns in age structure of Golden Eagles wintering in eastern North America

The behavior of wildlife varies seasonally, and that variation can have substantial demographic consequences. This is especially true for long-distance migrants where the use of landscapes varies by season and, sometimes, age cohort. We tested the hypothesis that distributional patterns of Golden Eagles (Aquila chrysaetos) wintering in eastern North America are age-structured (i.e., birds of similar ages winter together) through the analysis of 370,307 images collected by motion-sensitive trail cameras set over bait during the winters of 2012–2013 and 2013–2014. At nine sites with sufficient data for analysis, we documented 145 eagle visits in 2012–2013 and 146 in 2013–2014. We found significant between-year variation in age structure of wintering eastern Golden Eagles, driven largely by annual differences in the proportion of first-winter birds. However, although many other species show spatial structure in wintering behavior, our analysis revealed no latitudinal organization among age cohorts of wintering eastern Golden Eagles. The lack of age-related latitudinal segregation in wintering behavior does not exclude the possibility that these eagles have sex-based or other types of dominance hierarchies that could result in spatial or temporal segregation. Alternatively, other mechanisms such as food availability or habitat structure may determine the distribution and abundance of Golden Eagles in winter.     

Fine characterization of the Iceman's mtDNA haplogroup

Starting from specimens of the intestinal contents of the so-called Tyrolean Iceman or Otzi (5,350-5,100 years before present), it was possible by polymerase chain reaction to amplify fragments of the human mitochondrial DNA (mtDNA) control region that correspond to the sequence found in 1994 at the Munich and Oxford laboratories and which had been attributed to the original DNA of the mummy. The particularly favorable condition of the specimens, showing very low contamination levels, made it easier to extend the analyses to the coding region, which had not previously been considered. The mtDNA of the European population is currently divided into nine (H, T, U, V, W, X, I, J, and K) main groups (haplogroups). The K haplogroup, in particular, is composed of two (K1 and K2) subclusters. The results demonstrate that the Iceman's mtDNA belongs to the K1 subcluster, yet it does not fit any of the three known branches (a, b, and c) into which the K1 subcluster is presently divided. In addition, some other sites, reported to be linked to environmental adaptation or pathologies, were investigated.     

Dynamics of haplogroup frequencies and survival rates in a contact zone of two mtDNA lineages of the lizard Lacerta vivipara

The analysis of contact zones between lineages that were previously isolated in allopatry can lead to important insights on evolutionary processes such as selection and adaptation. In this paper we conducted a comparative demographic study of two mitochondrial DNA (mtDNA) lineages of the lizard Lacerta vivipara in the western Pyrénées to provide detail on the dynamics of their contact zone. By surveying haplogroup frequency across the contact area, we revealed the existence of a stable and very narrow contact zone between two parapatric lineages, which we infer to demonstrate a role for selection in the maintenance of this contact zone. We suggest these two lineages evolved in allopatry after retreating to different refugia during the Pleistocene glaciations, and subsequently came into secondary contact after the last glacial maximum. Although haplogroup frequencies were stable over time, we found significant age and environment (temperature) dependent survival differences between mtDNA haplogroups in one contact population sampled yearly from 2002 to 2009. Therefore, temperature‐induced demographic differences between the two mtDNA lineages may be responsible for the stability of this narrow contact zone. This is one of the first demographic studies conducted under natural conditions indicating the possibility of selection on mtDNA.     

Relationship between seasonal cold acclimatization and mtDNA haplogroup in Japanese

Background

The purpose of this study was to elucidate the interaction between mtDNA haplogroup and seasonal variation that contributes to cold adaptation.

Methods

There were 15 subjects (seven haplotype D subjects and eight haplotype non-D subjects). In summer and winter, the subjects were placed in an environment where the ambient temperature dropped from 27 °C to 10 °C in 30 minutes. After that, they were exposed to cold for 60 minutes.

Results

In summer, the decrease in rectal temperature and increase in oxygen consumption was smaller and cold tolerance was higher in the haplotype non-D group than in the haplotype D group. In winter, no significant differences were seen in rectal temperature or oxygen consumption, but the respiratory exchange ratio decreased in the haplotype D group.

Conclusions

The results of the present study suggest that haplogroup D subjects are a group that changes energy metabolism more, and there appears to be a relationship between differences in cold adaptability and mtDNA polymorphism within the population. Moreover, group differences in cold adaptability seen in summer may decrease in winter due to supplementation by seasonal cold acclimatization.     

Spatial and temporal variability in propagule limitation of California native grasses

Community composition and diversity arise from limitations in propagule supply (i.e. propagule or seed limitation) and propagule establishment after arriving at a site (i.e. establishment or microsite limitation). Recent meta‐analyses suggest that the degree of propagule limitation depends on local abiotic and biotic conditions, which in turn are likely to vary spatially and temporally. Nevertheless, seed addition studies testing propagule limitation are rarely replicated in multiple locations and years and often lack experimental manipulations of critical determinants of propagule limitation, such as the density and species richness of the propagule pool and disturbance and resource supply of recipient site. The invasion of California (USA) grasslands by exotic annual species from the Mediterranean region is unique in its scope (over 9 million ha) and persistence (more than 150 years). This invasion provides an exciting context in which to test the role of spatial and temporal variability in mediating propagule limitation and ultimately the potential for restoration. Here I present the results of native‐grass, seed‐addition trials conducted along a 500 km gradient in California in three consecutive years spanning a wide range of environmental conditions and initial conditions (e.g. rainfall, seeding density and disturbance). While native grasses were able to establish at many locations, per capita seed survival was low suggesting that the fate of these species is governed by interplay between propagule and establishment limitation. Establishment primarily varied spatially, with the most successful establishment occurring at fertile locations with low resident species richness. While recruitment was highly variable among years initially, there was no difference among seedling trials after three years.     

Using ancient mtDNA to reconstruct the population history of northeastern North America

Mitochondrial DNA (mtDNA) was extracted and analyzed from the skeletal remains of 44 individuals, representing four prehistoric populations, and compared to that from two other prehistoric and several contemporary Native American populations to investigate biological relationships and demographic history in northeastern North America. The mtDNA haplogroup frequencies of ancient human remains from the Morse (Red Ocher tradition, 2,700 BP) and Orendorf (Mississippian tradition, 800 BP) sites from the Central Illinois River Valley, and the Great Western Park (Western Basin tradition, 800 BP) and Glacial Kame (2,900 BP) populations from southwestern Ontario, change over time while maintaining a regional continuity between localities. Haplotype patterns suggest that some ancestors of present day Native Americans in northeastern North America have been in that region for at least 3,000 years but have experienced extensive gene flow throughout time, resulting, at least in part, from a demic expansion of ancestors of modern Algonquian-speaking people. However, genetic drift has also been a significant force, and together with a major population crash after European contact, has altered haplogroup frequencies and caused the loss of many haplotypes.     

The colonization of native phytophagous insects in North America by exotic parasitoids

Classical biological control could have a major environmental cost if introduced natural enemies colonize and disrupt native systems. Although quantifying these impacts is difficult for systems already colonized by natural enemies, the a priori condition for such impacts can be evaluated based on the extent to which exotics have acquired native hosts. We use native host records for exotic parasitoids introduced into North America for biological control to document the number of exotic species that have been recorded from at least one native insect species. We also evaluate the ability of six biological and ecological variables to predict whether or not a parasitoid will move onto natives. Sixteen percent of 313 parasitoid species introduced against holometabolous pests are known from natives. Further, the likelihood that a parasitoid had colonized native hosts was largely unpredictable with respect to the independent variables. We conclude that given the quality of the data available either now or in the foreseeable future, coupled with inherent stochasticity in host shifts by parasitoids, there are no rules of thumb to assist biological control workers in evaluating if an introduced parasitoid will colonize native insect communities. Received: 2 July 1997 / Accepted: 3 August 1997     

Diversity and relationships of bradyrhizobia from legumes native to eastern North America

DNA sequencing and polymerase chain reaction (PCR) assays with lineage-specific primers were used to analyze the diversity of 276 isolates of Bradyrhizobium sp. nodule bacteria associated with 13 native legumes species in the northeastern United States, representing eight genera in six legume tribes. A PCR screen with two primer pairs in the rRNA region indicated that seven of the legume species were exclusively associated with strains having markers resembling Bradyrhizobium elkanii, while the remaining six host species harbored strains related to both B. elkanii and Bradyrhizobium japonicum. Sequence analysis of 22 isolates for portions of 16S rRNA and 23S rRNA yielded congruent phylogenetic trees and showed that isolates from different legume genera often shared similar or identical sequences. However, trees inferred from portions of two other genes (alpha-ketoglutarate dioxygenase gene (tfdA), the alpha-subunit of nitrogenase (nifD)) differed significantly from the rRNA phylogeny. Thus, for Bradyrhizobium populations in this region, lateral gene transfer events appear to have altered genealogical relationships of different portions of the genome. These results extend the number of likely cases of gene transfer between divergent taxa of Bradyrhizobium (from members of the B. elkanii lineage to the B. japonicum group) and suggest that transfers have also occurred among separate subgroups of the B. elkanii lineage.     

Niche conservatism among non‐native vertebrates in Europe and North America

Niche conservatism, the hypothesis that niches remain constant through time and space, is crucial for the study of biological invasions as it underlies native‐range based predictions of invasion risk. Niche changes between native and non‐native populations are increasingly reported. However, it has been argued that these changes arise mainly because in their novel range, species occupy only a subset of the environments they inhabit in their native range, and not because they expand into environments entirely novel to them. Here, using occurrences of 29 vertebrate species native to either Europe or North America and introduced into the other continent, we assess the prevalence of niche changes between native and non‐native populations and assess whether the changes detected are caused primarily by native niche unfilling in the non‐native range rather than by expansion into novel environments. We show that niche overlap between native and non‐native populations is generally low because of a large degree of niche unfilling in the non‐native range. This most probably reflects an ongoing colonization of the novel range, as niche changes were smaller for species that were introduced longer ago and into a larger number of locations. Niche expansion was rare, and for the few species exhibiting larger amounts of niche overlap, an unfilling of the niche in the native range (e.g. through competition or dispersal limitations) is the most probable explanation. The fact that for most species, the realized non‐native niche is a subset of the realized native niche allows native‐range based niche models to generate accurate predictions of invasion risk. These results suggest that niche changes arising during biological invasions are strongly influenced by propagule pressure and colonization processes, and we argue that introduction history should be taken into account when evaluating niche conservatism in the context of biological invasions.     

Divergent biogeography of native and introduced soil macroinvertebrates in North America north of Mexico

To improve understanding of the biogeographical consequences of species introduction, we examined whether introduced soil macroinvertebrates differ from natives in the relationship between species richness and key environmental predictors, and whether such differences affect the relationship between native and introduced species richness. For North America north of Mexico, we summarized jurisdiction occurrence data for seven macroinvertebrate taxa with strong influences on soil biodiversity or processes. We analysed the relationships of native and introduced species richness to each other using linear regression; to latitude using Gaussian regressions; and, using the residuals of the richness–latitude regressions, to distance from coasts, human population density, and human population size using regression and correlation. We found weak to strong positive relationships between native and introduced species richness. This variation was related to divergent relationships of native and introduced species with latitude, human population density, and distance from coasts. Native species richness declined with increasing latitude for all taxa, as did introduced species richness for taxa with predominantly lower‐latitude origins (ants, termites, non‐lumbricid earthworms). In contrast, introduced species richness peaked at higher latitudes for four taxa of predominantly Palearctic origins (weevils, ground beetles, lumbricid earthworms, isopods). Partitioning introduced taxa within these groups based on region of origin, we found that Palearctic taxa were distributed at higher latitudes than non‐Palearctic taxa. Thus source region appears to strongly influence introduced species richness–latitude relationships. Compared to natives, introduced species exhibited more positive relationships with human population density and negative relationships with distance from coasts, but did not differ in relationships with human population size. Thus coastal, densely populated regions are likely to have a higher proportion of introduced soil macroinvertebrate species. These differences between distribution of native and introduced species tend to weaken positive correlations between native and introduced species richness, especially for taxa dominated by Palearctic introductions.     

Spatial and temporal variation in natural enemy assemblages on Maryland native plant species

Habitat manipulation is a branch of conservation biological control in which vegetation complexity and diversity are increased in managed landscapes to provide food and other resources for arthropod natural enemies. This is often achieved by maintaining noncrop plant material such as flowering strips and beetle banks that provide natural enemies with nectar and pollen, alternative prey, shelter from disturbance, and overwintering sites. In most cases, plant material used in habitat manipulation programs is not native to the area in which it is planted. Using native plant species in conservation biological control could serve a dual function of suppressing pest arthropod outbreaks and promoting other valuable ecosystem services associated with native plant communities. We evaluated 10 plant species native to Maryland for their attractiveness to foliar and ground-dwelling natural enemies. Plants that showed particular promise were Monarda punctata, Pycnanthemum tenuifolium, and Eupatorium hyssopifolium, which generally harbored the greatest abundance of foliar predators and parasitoids, although abundance varied over time. Among ground-dwelling natural enemies, total predator and parasitoid abundance differed between plant species, but carabid and spider abundance did not. Matching certain plant species and their allied natural enemies with specific pest complexes may be enhanced by identifying the composition of natural enemy assemblages at different times of year and in both foliar and ground habitat strata.     

Comparison of native and non‐native predator consumption rates and prey avoidance behavior in North America and Europe

Novel predator–prey interactions can contribute to the invasion success of non‐native predators. For example, native prey can fail to recognize and avoid non‐native predators due to a lack of co‐evolutionary history and cue dissimilarity with native predators. This might result in a competitive advantage for non‐native predators. Numerous lady beetle species were globally redistributed as biological control agents against aphids, resulting in novel predator–prey interactions. Here, we investigated the strength of avoidance behavior of the pea aphid (Acyrthosiphon pisum) toward chemical cues of native lady beetles and non‐native Asian Harmonia axyridis and European Coccinella septempunctata and Hippodamia variegata in North America, hypothesizing that cues of non‐native lady beetles induce weaker avoidance behavior than cues of co‐evolved native lady beetles. Additionally, we compared aphid consumption of lady beetles, examining potential predation advantages of non‐native lady beetles. Finally, we compared cue avoidance behavior between North American and European pea aphid populations and aphid consumption of native and non‐native lady beetles in North America and Europe. In North America, pea aphids avoided chemical cues of all ladybeetle species tested, regardless of their origin. In contrast to pea aphids in North America, European pea aphids did not avoid cues of the non‐native H. axyridis. The non‐native H. axyridis and C. septempunctata were among the largest and most voracious lady beetle species tested, on both continents. Consequently, in North America non‐native lady beetle species might have a competitive advantage on shared food resources due to their relatively large body size, compared to several native American lady beetle species. In Europe, however, non‐native H. axyridis might benefit from missing aphid cue avoidance as well as a large body size. The co‐evolutionary time gap between the European and North American invasion of H. axyridis likely explains the intercontinental differences in cue avoidance behavior and might indicate evolution in aphids toward non‐native predators.     

华北平原大气氮素沉降的时空变异

利用量雨器和湿沉降自动收集仪在华北平原9个监测点通过2a的试验,研究了农田生态系统中大气氮素沉降的时空变异。结果表明:华北平原大气氮素混合沉降的平均值为28.0 kg/(hm2.a),降水中铵态氮和硝态氮量平均分别为3.76 mg/L和1.85 mg/L。不同地区比较,北京大气氮素沉降为32.5 kg/(hm2.a),明显高于山东和河北两省的23.6 kg/(hm2.a)。北京各监测点的大气氮素沉降也存在明显空间变异,东北旺、房山的氮素沉降水平较高,延庆、顺义的氮素沉降水平较低。大气氮素沉降的年内分布不均,60%的沉降集中在降水较丰沛的6~9月份。氮素的输入与降雨量呈乘幂型正相关(r2=0.67),在农田生态系统中以铵态氮的沉降为主,铵态氮的沉降量是硝态氮的2.0倍;城市生态系统中以硝态氮的沉降为主,铵态氮的沉降量是硝态氮的0.79倍。在东北旺试验点近两年的监测结果表明,在等量降雨量条件下湿沉降输入的氮素(18~20.6 kg/hm2)明显低于混合沉降(26.3 kg/hm2),湿沉降的氮素输入仅占后者的73%,而混合沉降中的超量部分主要来自铵态氮,表明干沉降尤其是降尘带入的铵态氮也是华北平原大气氮素沉降的重要来源。