Genetic Architecture of Tameness in a Rat Model of Animal Domestication

A common feature of domestic animals is tameness—i.e., they tolerate and are unafraid of human presence and handling. To gain insight into the genetic basis of tameness and aggression, we studied an intercross between two lines of rats (Rattus norvegicus) selected over >60 generations for increased tameness and increased aggression against humans, respectively. We measured 45 traits, including tameness and aggression, anxiety-related traits, organ weights, and levels of serum components in >700 rats from an intercross population. Using 201 genetic markers, we identified two significant quantitative trait loci (QTL) for tameness. These loci overlap with QTL for adrenal gland weight and for anxiety-related traits and are part of a five-locus epistatic network influencing tameness. An additional QTL influences the occurrence of white coat spots, but shows no significant effect on tameness. The loci described here are important starting points for finding the genes that cause tameness in these rats and potentially in domestic animals in general.ANIMAL domestication marked a turning point in human prehistory (Diamond 2002), and domestic animals have been the subject of research for many years (Darwin 1868). Recently, genetic studies have shed light on when, where, and how often a range of animal species were domesticated (Troy et al. 2001; Vila et al. 2001; Savolainen et al. 2002; Larson et al. 2005; Driscoll et al. 2007; Eriksson et al. 2008; Naderi et al. 2008). With the exception of coat color (e.g., Pielberg et al. 2008) and skin pigmentation (Eriksson et al. 2008), little is known about what occurred genetically during animal domestication. At what genes were allelic variants selected for by would-be practitioners of animal husbandry? Although domestic animals differ from each other in many ways, they all share the trait of tameness—i.e., they tolerate and sometimes even seek human presence and handling. Almost nothing is currently known about the genetic basis of tameness.In a series of studies initiated by D. K. Belyaev, researchers at the Institute for Cytology and Genetics in Novosibirsk (Russia) have subjected several mammalian species to a process of experimental domestication (Trut 1999). These studies, some of them ongoing for several decades, involve selection for tame and aggressive behavior in lines of animals derived from wild populations. They include a fox population that has been “domesticated” to such an extent that the tame foxes are now similar to dogs in some respects (Hare et al. 2005). They also include a population of wild-caught rats (Rattus norvegicus) that was selected for either reduced or enhanced aggression toward humans over >60 generations (Belyaev and Borodin 1982). To select the animals, their response to an approaching human hand was observed, and the rats showing the least and the most aggressive behavior were allowed to mate within the two lines, respectively. The initial response to selection was rapid and then slowed, so that little change in behavior from generation to generation has been observed in the last 10–15 generations, although the selection regime has been continued to the present. Today, the “tame” rats are completely unafraid of humans, they tolerate handling and being picked up, and they sometimes approach a human in a nonaggressive manner. By contrast, the “aggressive” rats ferociously attack or flee from an approaching human hand.To study the genetic basis of tameness we have established populations of both rat lines in Leipzig. In their new environment, the rats maintained their behavioral differences in response to humans, and these differences were not influenced by postnatal maternal factors (Albert et al. 2008). In addition, the rat lines differ in a number of other behavioral, anatomical, and physiological traits, raising the question whether these traits are influenced by the same loci as tameness and aggression toward humans.Many domestic animals display conspicuous coat color variations not found in their wild relatives. Prominent examples include the white color variants in dogs, pigs, cows, horses, and chickens. In laboratory rats, it has been proposed that “coat color genes” may account for many of the differences associated with domestication (Keeler and King 1942). It is thus interesting that individuals with white spots appeared in both the tame foxes (Trut 1999) and the tame rats (Trut et al. 2000) at higher frequency than in the corresponding aggressive lines, although they were absent or rare in the founding fox and rat populations, and although they were not selected for. The rat populations studied here provide an excellent opportunity to examine whether tameness is influenced by the same loci as white coat spotting.In this study, we crossed the two rat lines and bred >700 intercross animals. A broad set of behavioral, anatomical, and physiological traits was measured, and a genomewide set of genetic markers was used to identify genomic regions (quantitative trait loci, QTL) that influence tameness as well as other traits that differ between the lines, including white spots.     

SCN2B in the Rat Trigeminal Ganglion and Trigeminal Sensory Nuclei

The beta-2 subunit of the mammalian brain voltage-gated sodium channel (SCN2B) was examined in the rat trigeminal ganglion (TG) and trigeminal sensory nuclei. In the TG, 42.6 % of sensory neurons were immunoreactive (IR) for SCN2B. These neurons had various cell body sizes. In facial skins and oral mucosae, corpuscular nerve endings contained SCN2B-immunoreactivity. SCN2B-IR nerve fibers formed nerve plexuses beneath taste buds in the tongue and incisive papilla. However, SCN2B-IR free nerve endings were rare in cutaneous and mucosal epithelia. Tooth pulps, muscle spindles and major salivary glands were also innervated by SCN2B-IR nerve fibers. A double immunofluorescence method revealed that about 40 % of SCN2B-IR neurons exhibited calcitonin gene-related peptide (CGRP)-immunoreactivity. However, distributions of SCN2B- and CGRP-IR nerve fibers were mostly different in facial, oral and cranial structures. By retrograde tracing method, 60.4 and 85.3 % of TG neurons innervating the facial skin and tooth pulp, respectively, showed SCN2B-immunoreactivity. CGRP-immunoreactivity was co-localized by about 40 % of SCN2B-IR cutaneous and tooth pulp TG neurons. In trigeminal sensory nuclei of the brainstem, SCN2B-IR neuronal cell bodies were common in deep laminae of the subnucleus caudalis, and the subnuclei interpolaris and oralis. In the mesencephalic trigeminal tract nucleus, primary sensory neurons also exhibited SCN2B-immunoreactivity. In other regions of trigeminal sensory nuclei, SCN2B-IR cells were very infrequent. SCN2B-IR neuropil was detected in deep laminae of the subnucleus caudalis as well as in the subnuclei interpolaris, oralis and principalis. These findings suggest that SCN2B is expressed by various types of sensory neurons in the TG. There appears to be SCN2B-containing pathway in the TG and trigeminal sensory nuclei.     

Choline Acetyltransferase Activity in the Rat Trigeminal System

Choline acetyltransferase activity was investigated in the superior cervical ganglia and in six microdissected regions of the medulla oblongata of the rat ipsilateral and contralateral to electrolytic lesions of the trigeminal sensory ganglia (Gasserian). Electrolytic lesions of the Gasserian ganglia failed to modify levels of enzymatic activity in all structures studied. This result would be an argument against the existence of a major cholinergic population of sensory neurones in the trigeminal system.     

通便化痔颗粒对痔疮模型大鼠的疗效

目的对酸灼伤大鼠皮肤能否行成痔疮模型进行方法学研究及通便化痔颗粒对此模型的药理作用。方法采用10 mol/L盐酸灼伤人工划伤的大鼠肛门周围皮肤及肛门内侧的黏膜,连续灌胃给予通便化痔颗粒10 d后,进行肉眼观察及光镜观察评分。通便化痔颗粒能使被盐酸灼伤并发生病理性改变的皮肤得到有效地恢复。结果病理结果显示痔疮模型成功;通便化痔颗粒在大、中剂量下能使大鼠被盐酸灼伤发生病理性改变的皮肤得到有效地恢复。结论酸灼伤大鼠皮肤模拟痔疮模型成立;通便化痔颗粒能够有效恢复大鼠痔疮模型皮肤组织。     

Axon Initial Segment Structural Plasticity is Involved in Seizure Susceptibility in a Rat Model of Cortical Dysplasia

Cortical dysplasia is the most common etiology of intractable epilepsy. Both excitability changes in cortical neurons and neural network reconstitution play a role in cortical dysplasia epileptogenesis. Recent research shows that the axon initial segment, a subcompartment of the neuron important to the shaping of action potentials, adjusts its position in response to changes in input, which contributes to neuronal excitability and local circuit balance. It is unknown whether axon initial segment plasticity occurs in neurons involved in seizure susceptibility in cortical dysplasia. Here, we developed a “Carmustine”- “pilocarpine” rat model of cortical dysplasia and show that it exhibits a lower seizure threshold, as indicated by behavior studies and electroencephalogram monitoring. Using immunofluorescence, we measured the axon initial segment positions of deep L5 somatosensory neurons and show that it is positioned closer to the soma after acute seizure, and that this displacement is sustained in the chronic phase. We then show that Nifedipine has a dose-dependent protective effect against axon initial segment displacement and increased seizure susceptibility. These findings further our understanding of the pathophysiology of seizures in cortical dysplasia and suggests Nifedipine as a potential therapeutic agent.     

Successful Amelioration of Mitochondrial Optic Neuropathy Using the Yeast NDI1 Gene in a Rat Animal Model

Background

Leber''s hereditary optic neuropathy (LHON) is a maternally inherited disorder with point mutations in mitochondrial DNA which result in loss of vision in young adults. The majority of mutations reported to date are within the genes encoding the subunits of the mitochondrial NADH-quinone oxidoreductase, complex I. Establishment of animal models of LHON should help elucidate mechanism of the disease and could be utilized for possible development of therapeutic strategies.

Methodology/Principal Findings

We established a rat model which involves injection of rotenone-loaded microspheres into the optic layer of the rat superior colliculus. The animals exhibited the most common features of LHON. Visual loss was observed within 2 weeks of rotenone administration with no apparent effect on retinal ganglion cells. Death of retinal ganglion cells occurred at a later stage. Using our rat model, we investigated the effect of the yeast alternative NADH dehydrogenase, Ndi1. We were able to achieve efficient expression of the Ndi1 protein in the mitochondria of all regions of retinal ganglion cells and axons by delivering the NDI1 gene into the optical layer of the superior colliculus. Remarkably, even after the vision of the rats was severely impaired, treatment of the animals with the NDI1 gene led to a complete restoration of the vision to the normal level. Control groups that received either empty vector or the GFP gene had no effects.

Conclusions/Significance

The present study reports successful manifestation of LHON-like symptoms in rats and demonstrates the potential of the NDI1 gene therapy on mitochondrial optic neuropathies. Our results indicate a window of opportunity for the gene therapy to be applied successfully after the onset of the disease symptoms.     

Plasticity of the Arabidopsis Root System under Nutrient Deficiencies

Plant roots show a particularly high variation in their morphological response to different nutrient deficiencies. Although such changes often determine the nutrient efficiency or stress tolerance of plants, it is surprising that a comprehensive and comparative analysis of root morphological responses to different nutrient deficiencies has not yet been conducted. Since one reason for this is an inherent difficulty in obtaining nutrient-deficient conditions in agar culture, we first identified conditions appropriate for producing nutrient-deficient plants on agar plates. Based on a careful selection of agar specifically for each nutrient being considered, we grew Arabidopsis (Arabidopsis thaliana) plants at four levels of deficiency for 12 nutrients and quantified seven root traits. In combination with measurements of biomass and elemental concentrations, we observed that the nutritional status and type of nutrient determined the extent and type of changes in root system architecture (RSA). The independent regulation of individual root traits further pointed to a differential sensitivity of root tissues to nutrient limitations. To capture the variation in RSA under different nutrient supplies, we used principal component analysis and developed a root plasticity chart representing the overall modulations in RSA under a given treatment. This systematic comparison of RSA responses to nutrient deficiencies provides a comprehensive view of the overall changes in root plasticity induced by the deficiency of single nutrients and provides a solid basis for the identification of nutrient-sensitive steps in the root developmental program.Plant survival and performance are highly dependent on the plant’s ability to efficiently explore the soil in the search for water and minerals. Thus, root growth and architecture are extremely relevant for the plant’s adaptation to the growth medium, as they determine the soil volume that a plant is able to explore at a given time. Root system architecture (RSA) represents the spatial arrangement of roots of different ages and orders (Lynch, 1995; Osmont et al., 2007) and is determined by genetic factors and the integration of environmental cues (Malamy, 2005). The genetic component determines the fundamental morphology and blueprint of a plant’s root system, whereas environmental cues shape root architecture by modifying the intrinsic genetic program. The existence of this additional level of regulation allows plants to display a high level of root plasticity, which reflects the shape, three-dimensional distribution, branching pattern, and age of the primary and postembryonically generated roots (Pacheco-Villalobos and Hardtke, 2012). The dynamic modulation of RSA is based on the intrinsic developmental nature of the different components of the root system. In fact, the primary root (PR) is established during embryogenesis, while the lateral roots (LRs) that originate from the PR develop postembryonically (Osmont et al., 2007; Péret et al., 2009). These highly dynamic changes in the overall RSA throughout time finally determine root plasticity and allow plants to efficiently adapt to environmental constraints.Nutrient availability can exert a profound impact on RSA by altering the number, length, angle, and diameter of roots and root hairs (for review, see Forde and Lorenzo, 2001; López-Bucio et al., 2003; Malamy, 2005; Osmont et al., 2007). In fact, plants can respond to the heterogenous availability of resources by allocating roots where the most favorable conditions are found (Zhang and Forde, 1998; Linkohr et al., 2002; Remans et al., 2006; Lima et al., 2010; Giehl et al., 2012). When grown under limited phosphorus (P) availability, roots exhibit a shallower architecture that results from the inhibition of PR elongation and the concomitant increase in LR formation (Williamson et al., 2001; López-Bucio et al., 2002; Sanchez-Calderon et al., 2005). Such an architectural rearrangement of the root is thought to improve the plant’s ability to forage P from the usually P-enriched topsoil horizon (Lynch and Brown, 2001; Rubio et al., 2003; Zhu et al., 2005). In contrast to low P, reduced nitrogen (N) availability stimulates PR and particularly LR elongation but not LR initiation (Linkohr et al., 2002; López-Bucio et al., 2003). However, it is noteworthy that under severe N shortage, LR formation is almost completely absent (Krouk et al., 2010), suggesting that plants require a certain level of N to sustain an active foraging strategy. These examples indicate that the availability of different nutrients can evoke distinct effects on RSA that depend upon which nutrient is supplied and the concentration of the supplied nutrient.Unfortunately, for the majority of the nutrients, a more detailed analysis of the architectural modifications under deficient conditions is still missing. In fact, most studies describe the effect of nutrient deficiencies on root growth and development only in terms of root biomass or total root length (Hermans and Verbruggen, 2005; Hermans et al., 2006; Richard-Molard et al., 2008; Jung et al., 2009; Cailliatte et al., 2010). Thus, important features of the root system are not comprehensible from these rather basic measurements. The characterization of RSA in more detail appears justified due to the positive correlations found between single root characteristics and plant yield, especially when the supply of water or mineral resources was limited (Landi et al., 2002; Tuberosa et al., 2002; Manschadi et al., 2006; Kirkegaard et al., 2007; Steele et al., 2007). Although a large number of studies have been conducted on the root development of grasses (Hochholdinger and Tuberosa, 2009; Iyer-Pascuzzi et al., 2010; Pacheco-Villalobos and Hardtke, 2012), our understanding of the molecular players involved in the regulation of root growth and development has benefited most from studies of the reference plant Arabidopsis (Arabidopsis thaliana) grown under controlled conditions to minimize variability. However, imposing consistent nutrient deficiencies presents an experimental challenge as long as plants are grown on agar medium, which is the method of choice to preserve the spatial arrangement of the root system and access a larger number of root traits.A major drawback of agar and agarose media is their inherent nutrient load, such that traces of nutrient contamination must often be made unavailable to plants, for example by adding chelating agents to lower the free activities of micronutrients (Bell et al., 1991; Yang et al., 1994; Rengel, 1999). Additionally, in many cases, symptoms of deficiency are only observed in mutants impaired in the uptake of the nutrient in question (Tomatsu et al., 2007; Mills et al., 2008; Assunção et al., 2010). In general, gelling agents may contribute considerable amounts of nutrients (Debergh, 1983; Scholten and Pierik, 1998), hampering the occurrence of deficiency for specific nutrients (Jain et al., 2009). Thus, it becomes crucial to select the most suitable gelling agent when particular nutrient deficiencies are to be obtained. This is particularly relevant as strategies depending upon the use of gelling media are being developed to overcome the bottleneck that often limits RSA traits from being characterized in high-throughput phenotyping studies (Iyer-Pascuzzi et al., 2010; Clark et al., 2011).In our approach to compare RSA under different nutrient deficiencies in Arabidopsis plants grown on solid medium, we first identified the most appropriate conditions for producing nutrient-deficient plants on agar plates. Once identified, these conditions allowed us to characterize the effects of 12 deficiencies at four intensity levels on the RSA by measuring seven root traits. These measurements, in combination with biomass and elemental concentrations, allowed us to determine the nutrient-specific effects on particular parameters of the RSA and thus to describe the root plasticity of Arabidopsis and analyze the underlying traits under different nutrient deficiencies.     

Characteristics of Sorbitol Uptake in Rat Glial Primary Cultures

Uptake of [U-14C]sorbitol was studied in astrogliarich rat primary cultures. Initial rate of sorbitol uptake is proportional to sorbitol concentration between 20 microM and 400 mM. Sorbitol transport is not inhibited by glucose, fructose, and a variety of structurally related polyols, or by cytochalasin B, an inhibitor of glucose transport. Phloretin, phlorizin, filipin, and n-hexanol, all compounds that alter the properties of biological membranes, and the sulfhydryl reagent p-chloromercuribenzoate inhibit sorbitol uptake to various degrees. Variation in the concentrations of extracellular Na+ and K+ does not affect transfer of sorbitol across the cell membrane. It is concluded that sorbitol is taken up into glial cells by a diffusion process, not involving a carrier and probably not through the lipid bilayer, but through a proteinaceous channel-like structure.     

Impaired ILK Function Is Associated with Deficits in Hippocampal Based Memory and Synaptic Plasticity in a FASD Rat Model

Fetal Alcohol Spectrum Disorder (FASD) is an umbrella term that encompasses a wide range of anatomical and behavioral problems in children who are exposed to alcohol during the prenatal period. There is no effective treatment for FASD, because of lack of complete characterization of the cellular and molecular mechanisms underlying this condition. Alcohol has been previously characterized to affect integrins and growth factor signaling receptors. Integrin Linked Kinase (ILK) is an effector of integrin and growth-factor signaling which regulates various signaling processes. In FASD, a downstream effector of ILK, Glycogen Synthase Kinase 3β (GSK3β) remains highly active (reduced Ser⁹ phosphorylation). GSK3β has been known to modulate glutamate receptor trafficking and channel properties. Therefore, we hypothesize that the cognitive deficits accompanying FASD are associated with impairments in the ILK signaling pathway. Pregnant Sprague Dawley rats consumed a “moderate” amount of alcohol throughout gestation, or a calorie-equivalent sucrose solution. Contextual fear conditioning was used to evaluate memory performance in 32–33-day-old pups. Synaptic plasticity was assessed in the Schaffer Collateral pathway, and hippocampal protein lysates were used to evaluate ILK signaling. Alcohol exposed pups showed impaired contextual fear conditioning, as compared to control pups. This reduced memory performance was consistent with decrease in LTP as compared to controls. Hippocampal ILK activity and GSK3β Ser^21/9 phosphorylation were significantly lower in alcohol-exposed pups than controls. Increased synaptic expression of GluR2 AMPA receptors was observed with immunoprecipitation of post-synaptic density protein 95 (PSD95). Furthermore, immunoprecipitation of ILK revealed a decreased interaction with GluR2. The ILK pathway appears to play a significant role in memory and synaptic plasticity impairments in FASD rats. These impairments appear to be mediated by reduced GSK3β regulation and increased synaptic stabilization of the calcium-impermeable GluR2 AMPA receptors.     

A Stereotaxic Apparatus for Injection of the Trigeminal Root and Ganglion

A stereotaxic apparatus was designed which would enable a needle to be passed easily through the foramen ovale with accuracy and with a minimum of radiological aid by one relatively unskilled in injection of the trigeminal ganglion. Successful penetration of the foramen was achieved in 39 of 46 injections on cadavers and in six injections on five patients. The substance injected was 5% phenol in glycerin. In one patient alcohol was used. The anesthesia produced was satisfactory in all except one patient. We feel that this apparatus will enable the trigeminal ganglion to be injected relatively easily in all patients except those with unusually shaped skulls.     

Experimental Control for the Ovariectomized Rat Model: Use of Sham Versus Nonmanipulated Animal

One of 2 models required by the U.S. Food and Drug Administration for registration of a treatment for osteoporosis, the ovariectomized (OVX) rat model, is widely used in scientific studies investigating sex hormone-deficient bone loss. The use of control nonhuman animals is critical because bone turnover may be affected by animal stress, use of anesthetic, and the mechanisms involved in wound healing. Historically, researchers have used sham-operated animals who undergo the same manipulations as the OVX rats, but ethical concerns require consideration of unmanipulated (unoperated) control animals to minimize animal distress and unnecessary procedures. Herein, we report the results of 3 studies including OVX, sham, and unmanipulated rats and the effects on bone mineral density and content (BMD/BMC) during 2 to 6 months postsurgery. Our data indicate that while OVX animals generally had lower BMD and BMC than animals in either of the control groups, no differences were observed between sham and unmanipulated animals at any of the time points assessed. However, because bone turnover is a long-term process, studies with longer duration and multiple endpoints are warranted to confirm these results.     

Presynaptic Plasticity as a Hallmark of Rat Stress Susceptibility and Antidepressant Response

Two main questions are important for understanding and treating affective disorders: why are certain individuals susceptible or resilient to stress, and what are the features of treatment response and resistance? To address these questions, we used a chronic mild stress (CMS) rat model of depression. When exposed to stress, a fraction of rats develops anhedonic-like behavior, a core symptom of major depression, while another subgroup of rats is resilient to CMS. Furthermore, the anhedonic-like state is reversed in about half the animals in response to chronic escitalopram treatment (responders), while the remaining animals are resistant (non-responder animals). Electrophysiology in hippocampal brain slices was used to identify a synaptic hallmark characterizing these groups of animals. Presynaptic properties were investigated at GABAergic synapses onto single dentate gyrus granule cells. Stress-susceptible rats displayed a reduced probability of GABA release judged by an altered paired-pulse ratio of evoked inhibitory postsynaptic currents (IPSCs) (1.48 ± 0.25) compared with control (0.81 ± 0.05) and stress-resilient rats (0.78 ± 0.03). Spontaneous IPSCs (sIPSCs) occurred less frequently in stress-susceptible rats compared with control and resilient rats. Finally, a subset of stress-susceptible rats responding to selective serotonin reuptake inhibitor (SSRI) treatment showed a normalization of the paired-pulse ratio (0.73 ± 0.06) whereas non-responder rats showed no normalization (1.2 ± 0.2). No changes in the number of parvalbumin-positive interneurons were observed. Thus, we provide evidence for a distinct GABAergic synaptopathy which associates closely with stress-susceptibility and treatment-resistance in an animal model of depression.     

RNA-Seq Analysis of Human Trigeminal and Dorsal Root Ganglia with a Focus on Chemoreceptors

The chemosensory capacity of the somatosensory system relies on the appropriate expression of chemoreceptors, which detect chemical stimuli and transduce sensory information into cellular signals. Knowledge of the complete repertoire of the chemoreceptors expressed in human sensory ganglia is lacking. This study employed the next-generation sequencing technique (RNA-Seq) to conduct the first expression analysis of human trigeminal ganglia (TG) and dorsal root ganglia (DRG). We analyzed the data with a focus on G-protein coupled receptors (GPCRs) and ion channels, which are (potentially) involved in chemosensation by somatosensory neurons in the human TG and DRG. For years, transient receptor potential (TRP) channels have been considered the main group of receptors for chemosensation in the trigeminal system. Interestingly, we could show that sensory ganglia also express a panel of different olfactory receptors (ORs) with putative chemosensory function. To characterize OR expression in more detail, we performed microarray, semi-quantitative RT-PCR experiments, and immunohistochemical staining. Additionally, we analyzed the expression data to identify further known or putative classes of chemoreceptors in the human TG and DRG. Our results give an overview of the major classes of chemoreceptors expressed in the human TG and DRG and provide the basis for a broader understanding of the reception of chemical cues.