Morphological and molecular characteristics of selected species of Minidiscus (Bacillariophyta,Thalassiosiraceae)

We report on taxonomically distinguishing morphological features of six diatom taxa from the marine, nanoplanktonic genus, Minidiscus, found in Eastern Canada and neighbouring waters. Four of the six were also investigated using genetic approaches. We found that the culture deposited in the Provasoli-Guillard National Center for Culture of Marine Phytoplankton (CCMP) as CCMP 496 was morphologically closest to the published type image of M. trioculatus, whereas other isolates were morphologically and/or genetically divergent. Consequently, we propose three new taxa. One monoclonal line isolated from the Bay of Fundy is proposed as a new variety, M. trioculatus var. monoculatus. The well-studied nanoplanktonic diatom strain, CCMP 495, currently considered to be ‘M. trioculatus’ was morphologically and genetically divergent from CCMP 496 and we propose specific status for it, M. variabilis. We isolated a new strain from the Gulf of St Lawrence that was nearly genetically identical in 18S and ITS regions to CCMP 495, but showed distinct morphological differences and we propose a new form for this strain. Culture-based data were supplemented by those from natural seawater whenever possible. Two species (M. comicus, M. chilensis) known from our region, but unavailable in culture, are presented for comparison.     

Phototrophic picoeukaryotes of Onega Bay,the White Sea: Abundance and species composition

The abundance, biomass, and composition of phototrophic picoeukaryotes (PPE, cell size less than 3 μm) were studied in Onega Bay of the White Sea in June 2015. The highest PPE abundance and biomass were registered in the 0–5-m water layer. In the bay, in the 0–5-m water layer, the average abundance and biomass varied from 0 to 36.8 × 10⁴ cell/L and from 0 to 117 μg С/m³, respectively. The Illumina sequencing of V4 region of 18S rRNA gene revealed eight classes of PPE. Mamiellophyceae dominated both by number of reads and by operational taxonomic units. The green algae Bathycoccus prasinos, Ostreococcus tauri, and Micromonas pusila, as well as diatoms Skeletonema marinoi and Minidiscus trioculatus, were identified to the species level.     

Annotated checklist of marine fishes from the Sanctuary of Bahía Chamela,Mexico with occurrence and biogeographic data

An annotated checklist of marine fishes of the Sanctuary of Islands and Islets of Bahía Chamela in the central Mexican Pacific is presented. Records of fish species were obtained by different methods including visual census, sampling with anesthetics, fisherman-nets, and trawling with a biological dredge. Additional records were obtained from natural history collections and publications. The list comprises 196 species in 64 families and 141 genera. The Carangidae is the most speciose family with 11 species, followed by the Labridae with 10 and the Pomacentridae with nine. Fourteen species are endemic in Mexican Pacific waters, but none is restricted to Bahía Chamela. The most dominant species recorded during underwater surveys were Epinephelus labriformis, Stegastes flavilatus, and Halichoeres dispilus. Most species are of tropical affinities distributed throughout the tropical eastern Pacific (123), eastern Pacific (23), and Mexican Pacific (14). Other species are known from the eastern and Indo-Pacific regions (18), eastern Pacific and western Atlantic oceans (2), and some are circumtropical (9). A new record of the Gulf Brotula Ogilbia ventralis is provided for the Bahía Chamela and its geographical distribution is extended to Mexican central Pacific.     

A new species of Peltidium Philippi, 1839 (Crustacea,Copepoda, Harpacticoida) from the Pacific coast of Mexico

During the analysis of phytal meiobenthic samples collected from a rocky-sandy beach in the state of Nayarit, in the Mexican Pacific, several specimens of harpacticoid copepods were obtained and taxonomically examined. These specimens were found to represent an undescribed species of the peltidiid genus Peltidium Philippi, 1839. The new species, Peltidium nayarit sp. n. is described herein. It resembles Peltidium nichollsi Geddes and Peltidium lerneri Geddes from Bahamas but also the widespread Peltidium speciosum Thompson & Scott and Peltidium purpureum Philippi. The new species from the Mexican Pacific differs from its known congeners by its possession of a unique combination of characters, including a modified pectinate seta on the antennary exopod, three terminal setae on the second endopodal segment of leg 1, third exopodal segment of leg 1 with three elements, inner terminal claw twice as long as outer claw, female fifth leg with 5 exopodal setae, exopodal setae I-III stout, spinulose and seta IV being as long as seta V. This is the second species of the family known to be distributed in the Eastern Tropical Pacific and in Mexico. Pending additional data, the distribution of this species appears to be restricted to this area of the Mexican Pacific.     

Range extension and morphological characterization of rhodolith-forming species (Corallinales,Rhodophyta) from shallow water in the Mexican South Pacific

Living rhodolith beds are widely distributed along the Eastern Pacific ocean. Despite their widespread distribution, little is known about the rhodolith-forming species from shallow water in the Mexican South Pacific. Many taxonomic and morphological studies about rhodoliths have been carried out in the Gulf of California, where the forming species belong to the Hapalidiaceae and Corallinaceae families. This paper is the first report on the occurrence of the rhodolith-forming Hapalidiaceae species Lithothamnion muelleri and Phymatolithon repandum at three sites in the Mexican South Pacific. The branch density, maximum length and sphericity were measured for each determined species. Rhodoliths were distributed between 4 and 6 m depth, but differences in the branch density between species and sites were not found. Finally, the present record of L. muelleri fills the gap in the species distribution along the Eastern Pacific ocean, while the record of P. repandum is the first of the species in the region.     

MOLECULAR PHYLOGENY OF SELECTED MEMBERS OF THE ORDER THALASSIOSIRALES (BACILLARIOPHYTA) AND EVOLUTION OF THE FULTOPORTULA1

Recent phylogenetic studies of the diatoms indicate that members of the order Thalassiosirales occupy an interesting position in the diatom evolutionary tree. Despite their radial morphology and scaly auxospores, they are consistently recovered in molecular analyses as a member of subdivision Bacillariophytina and a sister clade to non‐fultoportulate and non‐radial lithodesmioids. This study included 46 species from nine traditionally accepted extant genera, and analyzed 43 nuclear small subunit (SSU) rRNA sequences in parallel with a survey of the variation in fultoportula structure. Three possible scenarios leading to the evolution of the fultoportula are discussed in the context of molecular and morphological similarities between the examined Thalassiosirales and their SSU rRNA sister clade Lithodesmiales. We speculate that the fultoportula might be derived by a modification of either a cribrum in an areola (fultoportula within an areola), or structures similar to marginal ridges now seen in lithodesmioids around a cluster of poroids (fultoportula in a tube), or finally, that the central fultoportula may have an origin different from the marginal fultoportulae. Our data confirm that fultoportula‐bearing diatoms constitute a natural phylogenetic group. The families Thalassiosiraceae, Skeletonemaceae, and Stephanodiscaceae and the genus Thalassiosira Cleve were unexpectedly found to be paraphyletic. Further, Cyclotella Kutz. and Stephanodiscus Ehr. may not be closely related and some species of these genera are more closely allied to other species of Thalassiosira. The generitype, T. nordenskioeldii, is embedded within a large poorly structured cluster of species that includes several members of Thalassiosira, Planktoniella sol, Minidiscus trioculatus, and two members of Stephanodiscus. An emendment of the order Lithodesmiales and the family Lauderiaceae are proposed.     

Bioinvasion threatens the genetic integrity of native diversity and a natural hybrid zone: smooth‐shelled blue mussels (Mytilus spp.) in the Strait of Magellan

Smooth‐shelled blue mussels of the Mytilus edulis species complex are widely distributed bivalve molluscs whose introductions threaten native marine biodiversity (non‐indigenous species – NIS). The aim of the present study was to identify the species and hybrids of Mytilus present in the Magellan Region (southern Chile). Results indicate that three mussel species of the Mytilus edulis complex are found in the region – M. edulis, M. chilensis (or the Southern Hemisphere lineage of Mytilus galloprovincialis), and M. galloprovincialis of Northern Hemisphere origin. For the first time, alleles of the introduced M. trossulus are reported from the Southern Hemisphere. In the Strait of Magellan the native Pacific blue mussel, Mytilus chilensis and the native Atlantic blue mussel, Mytilus edulis, meet and mix at a natural hybrid zone (about 125 km in length). This is the first record of a natural Mytilus hybrid zone in the Southern Hemisphere and is also the first record of the co‐occurrence of genes from all four Mytilus species in any one region. These results contribute to the knowledge of the biodiversity and delimitation of mussel species in southern South America, and highlight how introduced species may threaten the genetic integrity of native species through hybridization and introgression.     

A new simple-leaved species of Recchia (Simaroubaceae) from southeastern Mexico

Recchia simplicifolia, a new species from southern Veracruz, southern Tabasco and northern Chiapas, represents the first non-microphyllous simple-leaved New World species of Simaroubaceae. It differs from the other two species of Recchia in its simple leaves, cauliflory, and rain forest habitat. Its discovery may necessitate a reevaluation of the relationships of Surianaceae and Simaroubaceae. Although its distribution corresponds to a high-precipitation area which demonstrates strong affinities to the wet Central American flora and may have served as a refuge area for rain forest species during parts of the Pleistocene, its relationships are strictly with Mexican species of the dry Pacific slope, supporting the hypothesis of exchange between the wet and dry Mexican floras during the climatic cycles of the Pleistocene.     

First assessment of the diet composition and trophic level of an assemblage of poorly known chondrichthyans off the central coast of Peru

Although chondrichthyans are conspicuously present in shallow waters, many ecological aspects of neritic species in the Humboldt Current System remain unknown. This study provides a first assessment of the diet of seven commercially exploited and understudied sympatric chondrichthyans inhabiting nearshore habitats off the central coast of Peru: four stingrays (Hypanus dipterurus, Myliobatis peruvianus, M. chilensis, and Urotrygon chilensis), a guitarfish (Pseudobatos planiceps), a smooth-hound shark (Mustelus mento), and a chimaera (Callorhinchus callorynchus). A total of 166 stomachs were examined between 2012 and 2015 and prey items were pooled for the total of years for analysis. Although our analysis did not account for inter seasons variability, our results suggest diet partitioning among species, except for the stingrays’ group. A diet based on soft-bottom polychaetes and fish was shared by H. dipterurus, M. peruvianus, and M. chilensis, while soft-bottom polychaetes and crabs were more important in U. chilensis. The smooth-hound shark and guitarfish exhibited a diet dominated by crabs, and the chimaera consumed mainly hard-bottom mollusks. Foraging habitat estimations distinguished two main habitats of association: Benthic, including the stingray U. chilensis, the chimaera, and the smooth-hound shark; and benthic-demersal, including the guitarfish, and the rest of stingrays. A pattern of feeding specialization was observed for H. dipterurus, P. planiceps, and C. callorynchus. Preliminary trophic level estimations based on diet composition placed these species as secondary consumers. Intraspecific dietary variation was assessed for P. planiceps and H. dipterurus as their sampled sizes allowed meaningful comparisons. The diet of P. planiceps varied from small to large sizes but not for H. dipterurus. No differences were detected on diet composition between males and females in either species. Despite the limited temporal resolution, this study provides the first insights of chondrichthyans predatory activity, suggesting diet partitioning among the species of this assemblage in a nearshore habitat of the central coast of Peru. Enhancing the temporal resolution of this type of studies would improve our knowledge on trophic functioning in the Humboldt Current ecosystem.     

MOLECULAR IDENTIFICATION OF TWO SIBLING SPECIES UNDER THE NAME GRACILARIA CHILENSIS (RHODOPHYTA,GRACILARIALES)1,3

Molecular markers belonging to three different genomes, mitochondrial (cox2‐3 spacer), plastid (RUBISCO spacer), and nuclear (internal transcribed spacer 1), were used to compare Gracilaria chilensis samples collected along the Chilean coast with samples ascribed to G. chilensis from the West Pacific Ocean (New Zealand and Australia). Our data are in agreement with previous studies suggesting two sibling species currently going under the name G. chilensis that co‐occur in New Zealand. One of these, a New Zealand sample previously examined by Bird and others in 1990, is conspecific with G. chilensis from Chile. Finally, our results demonstrate clearly that most of the sequences in GenBank reported as G. chilensis are based on misidentified material.     

Historical records reveal potential extirpation of four hammerhead sharks (Sphyrna spp.) in Mexican Pacific waters

Populations of hammerhead sharks (Sphyrna and Eusphyra) have declined in many regions of the world. Six of the eight hammerheads known to date are distributed in the Mexican Pacific: S. corona, S. lewini, S. media, S. mokarran, S. tiburo and S. zygaena. These species, with exception of S. corona, were abundant in the Gulf of California in 1960s. I analyze records from fishery-dependent and fishery-independent surveys, and records from ichthyological collections to determine the presence and frequency of hammerheads in the Mexican Pacific. The most frequent hammerheads in fishery-dependent and fishery-independent surveys were S. lewini and S. zygaena. It appears that S. media, S. mokarran and S. tiburo might have been extirpated from the Gulf of California. In the last two decades, records of S. mokarran (n = 61) were restricted to Central and Southern Mexican Pacific, and records of S. tiburo (n = 3) and S. media (n = 3) were restricted to the Southern region. Given the continued fishing pressure, inferred declines and the probable extirpation of populations, S. tiburo and S. media should be reassessed for the IUCN red list as Endangered or Critically Endangered. Sphyrna corona should be reassessed as Endangered or Critically Endangered, because it is endemic to the Eastern Pacific and recent records have been obtained only from Colombian waters. The Endangered status of S. mokarran is confirmed for this region.     

Atlas of Mexican Triatominae (Reduviidae: Hemiptera) and vector transmission of Chagas disease

Chagas disease is one of the most important yet neglected parasitic diseases in Mexico and is transmitted by Triatominae. Nineteen of the 31 Mexican triatomine species have been consistently found to invade human houses and all have been found to be naturally infected with Trypanosoma cruzi. The present paper aims to produce a state-of-knowledge atlas of Mexican triatomines and analyse their geographic associations with T. cruzi, human demographics and landscape modification. Ecological niche models (ENMs) were constructed for the 19 species with more than 10 records in North America, as well as for T. cruzi. The 2010 Mexican national census and the 2007 National Forestry Inventory were used to analyse overlap patterns with ENMs. Niche breadth was greatest in species from the semiarid Nearctic Region, whereas species richness was associated with topographic heterogeneity in the Neotropical Region, particularly along the Pacific Coast. Three species, Triatoma longipennis, Triatoma mexicana and Triatoma barberi, overlapped with the greatest numbers of human communities, but these communities had the lowest rural/urban population ratios. Triatomine vectors have urbanised in most regions, demonstrating a high tolerance to human-modified habitats and broadened historical ranges, exposing more than 88% of the Mexican population and leaving few areas in Mexico without the potential for T. cruzi transmission.     

Geographic and ontogenetic variation in the diet of two commonly exploited batoids (Chilean eagle ray and Pacific guitarfish) off Peru: evidence of trophic plasticity

This study provides information about the diet across geographic areas and throughout ontogeny and sex of two coastal and commercial batoid species in Peru (Chilean eagle ray Myliobatis chilensis and Pacific guitarfish Pseudobatos planiceps). Data was collected in the central coast (13°30′S to 14°30′S; Pisco district, Lima) and in the northern coast (13°12′S to 13°49′S; San Jose district, Lambayeque) off Peru during the second semester of the years 2015 and 2016 (i.e., winter and spring) in an El Niño event. A total of 357 stomach contents were analyzed in northern and central Peru with different oceanographic and ecological conditions. In the central coast, M. chilensis showed a high trophic position (tertiary consumer) due to its high consumption of Peruvian anchoveta (Engraulis ringens), while P. planiceps had a lower trophic position (secondary consumer) and a less specialized diet of benthic invertebrates (i.e., crustaceans and mollusks) and pelagic fish (e.g., E. ringens). In the northern coast, both species preyed mainly upon benthic invertebrates and to a lesser degree on fish; therefore, their trophic position was lower. Dietary variation was influenced by species, geographic location, and ontogeny. The diet variability between geographic locations shows insights of these batoids’ trophic plasticity and opportunistic feeding behavior in response to differences in the local prey availability, an effect that may be amplified during the El Niño–Southern Oscillation (ENSO). The spatial variation in this species diet may indicate that they play different ecological roles in distinct environments. This study contributes to the scarce literature about batoids’ ecology in the southeast Pacific Ocean and presents novel information on habitat-specific diet composition.

     

Diversity and distribution of Laurencia sensu stricto (Rhodomelaceae,Rhodophyta) from the Mexican Pacific,including L. mutueae sp. nov.

The alpha diversity of Laurencia sensu stricto, as well as the majority of the other algal groups along the Mexican Pacific, was underestimated because very few studies had incorporated the use of molecular markers in taxonomic studies, which would allow a more realistic estimation of diversity, incluing new records and new species. The records of Laurencia s.s. for the Eastern Pacific (California, USA to Chile) currently represent 23% of its richness worldwide. In this work, we proposed an updated census of the currently recognized species of Laurencia s.s. for the Mexican Pacific. This checklist reported the occurrence of 22 species that represent 16% of the 137 species worldly recorded. We further included taxonomic remarks, type localities, and a detailed distribution for each species. In addition, we proposed a new species for this region, Laurencia mutueae sp. nov., based on morphological observation as well as phylogenetic analyses. The distribution in the Mexican Pacific revealed that the highest records of species were for the sub‐temperate region, while the localities along the Mexican tropical Pacific were poorly recorded. The scarcity of floristic affinities between the eastern and the western and central parts of the North Pacific Ocean was hypothesized to be a consequence of a strong isolation and hard barriers, such as the water masses between these regions.     

Almost a century of oblivion: Integrative taxonomy allows the resurrection of the longnose skate Zearaja brevicaudata (Marini, 1933) (Rajiformes; Rajidae)

Zearaja chilensis has been reported from Southern Brazil in the Southwest Atlantic (SWA) to northern Chile in the Southeast Pacific (SEP), and it was listed as vulnerable by the IUCN. Recent molecular studies have called into question the conspecificity between specimens from these opposite coasts of South America, which can have implications for the conservation status of the species. To verify the identity of specimens identified as Z. chilensis, 47 individuals from SWA and 22 from SEP were examined. By comparing external morphology, spinulation pattern, clasper, egg cases, and mitochondrial cytochrome c oxidase I (COI) sequence data, differences between groups were found. Adults from SWA presented longer snout length and shorter tail than those from SEP. Dermal denticles were restricted to the rostral area in SWA skates, whereas in SEP skates most of the dorsal surface was covered with denticles. Marked differences in the morphology of several components of clasper were noticeable. Egg cases of SWA skates had thinner lateral keels than those of SEP. Molecular analysis revealed two well-defined cohesive clusters, corresponding to SWA and SEP specimens, respectively. Average K2P distance between groups was 3.4%, higher than expected for intraspecific differences, and sequences were assigned to different BINs. These integrative approaches strongly support that specimens from SWA known as Z. chilensis correspond to a different nominal species than those from SEP. Herein, Z. brevicaudata (Marini 1933) is resurrected from synonymy with Z. chilensis.     

Gelidiaceae (Rhodophyta) in Bahía de Banderas,Western Pacific,México

We present the results of a floristic study of intertidal species of Gelidiaceae collected in ten localities in the Bahía de Banderas region. The study area is within an extensive overlapping transitional zone between the tropical and subtropical regions of the Mexican Pacific coast. Species of the genera Gelidium and Pterocladia were found, G. microdentatum and G. pusillum being the most abundant and widely distributed in the Bay. The local and Mexican Pacific distribution for each species is given. The number of species found in this study is compared with the numbers reported in the literature for the Mexican Pacific.     

PNPLA3 I148M polymorphism is associated with elevated alanine transaminase levels in Mexican Indigenous and Mestizo populations

The patatin like phospholipase domain-containing (PNPLA3) I148M variant is the strongest genetic factor associated with elevated alanine transaminase (ALT) levels in different populations, particularly in Hispanics who have the highest 148M risk allele frequency reported to date. It has been suggested that Indigenous ancestry is associated with higher ALT levels in Mexicans. The aim of the present study was to assess the frequency of the PNPLA3 148M risk allele in Mexican indigenous and Mestizo individuals, and to examine its association with serum ALT levels. The study included a total of 1624 Mexican individuals: 919 Indigenous subjects from five different native groups and 705 Mexican Mestizo individuals (141 cases with ALT levels ≥40 U/L and 564 controls with ALT <40 U/L). The I148M polymorphism was genotyped by TaqMan assays. The frequency of elevated ALT levels in Indigenous populations was 18.7 %, and varied according to obesity status: 14.4 % in normal weight, 19.9 % in overweight and 24.5 % in obese individuals. The Mexican indigenous populations showed the highest reported frequency of the PNPLA3 148M risk allele (mean 0.73). The M148M genotype was significantly associated with elevated ALT levels in indigenous individuals (OR = 3.15, 95 % CI 1.91–5.20; P = 7.1 × 10^?6) and this association was confirmed in Mexican Mestizos (OR = 2.24, 95 % CI 1.50–3.33; P = 8.1 × 10^?5). This is the first study reporting the association between M148M genotype and elevated ALT levels in Indigenous Mexican populations. The 148M allele risk may be considered an important risk factor for liver damage in Mexican indigenous and Mestizo populations.     

Historical biogeographical patterns of the species of Bursera (Burseraceae) and their taxonomic implications

Aim The plant genus Bursera, with 104 species of trees and shrubs, has been used as a model for biogeographical analyses because of its high species richness and large number of endemic species. The biogeographical patterns of Bursera and their implications for its phylogenetic classification are reviewed in order that some hypotheses on the historical biogeography of tropical Mexico can be proposed. Location Bursera is found in the south‐western USA, most of Mexico, mainly below 1700 m elevation in tropical forests, with some species in xeric shrublands, diversifying along the Pacific slope, Central America, and north‐western South America. A few species occur on the Galapagos and Revillagigedo archipelagos, some of which are endemics, whereas in the Antilles species are distributed extensively, with several endemics in the Bahamas, Cuba, Jamaica, and Hispaniola. Methods Data from specimens in herbaria and the literature were used to construct a matrix of 104 species in 160 areas. Distributional patterns of the species of Bursera were inferred applying track analysis, parsimony analysis of endemicity (PAE), and Brooks parsimony analysis (BPA). Results Track analysis revealed four individual tracks: (1) a circum‐Caribbean track, comprising species of the Bursera simaruba species group; (2) an Antillean track, including species that have been transferred to Commiphora based on their pollen traits; (3) a Mexican Pacific track, including species of the B. fragilis, B. microphylla, and B. fagaroides species groups, called ‘cuajiotes’; and (4) a Neotropical Pacific track, including the two species groups assigned to section Bullockia, in which the individual track of the Bursera copallifera species group is nested within the track of the B. glabrifolia species group. The four tracks overlap in a node in the Mexican Pacific slope, where they are highly diversified. PAE allowed us to identify 22 areas of endemism: 12 in Mexico (11 along the Mexican Pacific slope), six in the Antilles, two in Central America, one in South America, and one in the Galapagos. The general area cladogram obtained by BPA has two main clades: one includes the greater Antilles; and the other, 12 Mexican areas of endemism. Main conclusions Bursera fragilis, B. microphylla, and B. fagaroides species groups can be treated together as a new section within Bursera, sect. Quaxiotea, because they are segregated from the other groups of sect. Bursera based on morphological, anatomical, molecular and geographical evidence.