Can the barrier effect of highways cause genetic subdivision in small mammals?

Roads and highways contribute enormously to habitat fragmentation, because they can inhibit or even block animal movement across them, which may result in the ultimate division of the populations adjacent to the roads into smaller isolated subpopulations. The isolation reduces gene flow and increases risk of extinction due to a decrease in the genetic diversity of the isolated population. The aim of the present study is to determine whether highways can cause genetic subdivision of the bank vole Myodes glareolus (Schreber, 1780) and yellow-necked mouse Apodemus flavicollis (Melchior, 1834). The study was carried out at three sites in the Highway D1 (Prague-Brno) in the Czech Republic, where a previous study demonstrated a barrier effect of the highway avoiding the interchange of individuals of both species. The genetic structure was determined from the analysis of six DNA microsatellites loci in M. glareolus and five in A. flavicollis. We found only weak genetic differences between populations living at opposite sides of the highway in either of the species and a low degree of subdivision, but significant positive correlation between genetic and geographical distance, which suggests isolation by distance in both species.     

Can kin selection facilitate the evolution of the genetic program of senescence?

The theory of adaptive senescence, or phenoptosis (“altruistic suicide” of the organism), implies that mutations enhancing mortality growth with age (“senescence genes”) can be favored by selection under some circumstances, although the nature of these circumstances and the frequency of their occurrence are not clear. Here I demonstrate by means of computer simulation that senescence genes can spread in the population’s gene pool via the mechanism of kin selection if two conditions are met. First, the population must have high viscosity (low intermixing), which provides positive correlation between spatial proximity of individuals and their relatedness, an important precondition for kin selection. Second, prior to acquisition of the senescence genes, there must be a sufficiently fast decline in the reproductive potential with age, while viability should decrease slower or remain constant. These conditions are probably met in some territorial and social species with severe competition for social rank and mating partners.     

Can zoo records help answer behavioral research questions? The case of the left‐handed lemurs (Lemur catta)

Most zoos keep comprehensive records, which potentially form a database for use in answering some research questions, such as in veterinary and population management research. They have not, however, been widely used to answer questions about animal behavior and welfare. Here we try to assess the usefulness to behavioral research of two sorts of zoo records (ARKS, the Animal Records Keeping System, and student dissertations held on file) to test the hypothesis that ring-tailed lemurs with a left limb preference experience more negative social lives. We found that, as predicted, lemurs with a left limb preference (LH) received more aggression and were involved in less grooming than nonleft-preferent lemurs (NLH), though the differences were not statistically significant. Contrary to prediction, LH lemurs had fewer reported woundings than NLH lemurs, but again the difference was not statistically significant. We found that the ARKS reports did not contain sufficient quantified and systematic behavioral data for our purposes, although otherwise they provided an excellent context for interpreting results. The student dissertations were also of limited use, primarily because of the small time frame in which they were carried out. Because of these shortcomings we were unable to distinguish whether our inability to find significant effects was due to biological (perhaps hand preference had no consequences for the lemurs) or data reasons. We suggest that closer liaison between zoo research staff, zoo record keepers and academic supervisors could help to improve the usefulness of zoo records for behavioral research.     

Can model species be used to advance the field of invasion ecology?

Hypotheses for explaining plant invasions have focused on a variety of factors that may influence invasion success, including propagule pressure, interactions of the introduced species with the biotic, abiotic, or disturbance properties of the new ecosystem, or the genetic characteristics of the invader itself. Evaluating the relative importance of these factors has been difficult because for most invaders key information about the introduced population or the introduction event is not available. We propose that natural experiments using model species is an important tool to test multiple invasion hypotheses at the same time, providing a complementary approach to meta-analysis and literature review. By focusing on a single candidate species, Pinus contorta, we explore several attributes that we propose constitute a good model, including: (a) intentional and relatively well documented introduction into a wide range of environments and countries across the world during the past century, where invasion success or failure has already occurred, (b) conspicuous growth form that simplifies assessment of growth rates, and comparisons across native and introduced ecosystems around the world, and, (c) documented and replicated variability of introduction intensity, genetic characteristics of the introduced populations, contrasting biotic communities present at sites of introduction, and abiotic conditions within and across introduced ecosystems. We propose that identifying model species with these characteristics will provide opportunities to disentangle the relative importance of different mechanisms hypothesized to influence invasion success, and thereby advance the field of invasion ecology.     

Can ecological land classification increase the utility of vegetation monitoring data?

Vegetation dynamics in rangelands and other ecosystems are known to be mediated by topoedaphic properties. Vegetation monitoring programs, however, often do not consider the impact of soils and other sources of landscape heterogeneity on the temporal patterns observed. Ecological sites (ES) comprise a land classification system based on soil, topographic, and climate variations that can be readily applied by land managers to classify topoedaphic properties at monitoring locations. We used a long-term (>40 y) vegetation record from southeastern Arizona, USA to test the utility of an ES classification for refining interpretations of monitoring data in an area of relatively subtle soil differences. We focused on two phenomena important to rangeland management in the southeastern Arizona region: expansion of the native tree velvet mesquite (Prosopis velutina Woot.) and spread of the introduced perennial grass Lehmann lovegrass (Eragrostis lehmanniana Nees). Specifically, we sought to determine if a quantitative, ES-specific analysis of the long-term record would (1) improve detection of changes in plant species having heightened ecological or management importance and (2) further clarify topoedaphic effects on vegetation trajectories. We found that ES class membership was a significant factor explaining spatiotemporal variation in velvet mesquite canopy cover, Lehmann lovegrass basal cover, and Lehmann lovegrass density measurements. In addition, we observed that the potential magnitude of velvet mesquite and Lehmann lovegrass increases varied substantially among ES classes. Our study brings attention to a practical land management tool that might be called upon to increase the effectiveness of vegetation-based indicators of ecosystem change.     

The Harvard case of Xu Xiping: exploitation of the people, scientific advance, or genetic theft?

A unique history and make-up of a population may make it an attractive research target for population geneticists and pharmaco-genomic investors. The promise of pharmaceutical profits and advances in medical knowledge attracted Harvard researchers and the company Millennium Pharmaceuticals to remote areas in Anhui Province, Central China, leading to international diplomatic disagreements about issues such as the ownership of genetic material and informed consent (IC). This article discusses the role of genomics and genetic sampling in China, the way it is related to population policies (the new eugenics), the national importance of genetic materials and the conflicts it led to between the Chinese government and Harvard University. Here many consider the Xu Xiping case as textbook example of ruthless Western exploitation of development countries, illustrating the cold rationality of science in the process of globalisation. Ten perspectives on this case show that this view is simplistic and contributes little to an understanding of bioethical issues important to the population actually donating the samples. Viewing the Xu Xiping case as the nexus of the intertwinement of international, transnational, national, and local interest groups shows how different interest groups make use of different units of analysis. It also clarifies why the same practice of genetic sampling continues under a different regime, and why the discussion about genetic sampling has shifted from a concern with health care of the poor to an issue of international exploitation, terrorism and development.     

Differences in the onset of laying between island and mainland Mediterranean Blue Tits Parus caeruleus: phenotypic plasticity or genetic differences?

Blue tits Parus caeruleus breeding in deciduous or in evergreen woodlands on the mainland of Europe start to lay 3–4 weeks earlier than Blue Tits on the island of Corsica breeding in evergreen woodlands. A similar difference in average laying date between the two Blue Tit populations has been found in a relatively small sample of captive birds held in outdoor aviaries on the mainland. To provide data on the habitat contrast in Corsica for comparison with that on the mainland, a new study area was started in one of the few deciduous woodlands on Corsica. In addition, new data on laying dates of captive Blue Tits were gathered to increase the sample size of independent pairs in aviaries. This study shows that the habitat effect (deciduous ν evergreen woodland) on the average laying date of Blue Tits is relatively small in comparison with the geography effect (European mainland ν Corsica). The laying date differences between mainland and insular Blue Tits persisted whatever the type of habitat (deciduous, evergreen or outdoor aviaries on the mainland). The data support the hypothesis that the observed differences in the onset of laying between the mainland and insular Blue Tits were mainly influenced by genetic effects and relatively little by non-genetic maternal effects of by genotype—environment interactions.     

The failed invasion of Harmonia axyridis in the Azores,Portugal: Climatic restriction or wrong population origin?

We tested two questions:(i)whether the climatic conditions of the Azorean Islands in Portugal may have restricted the invasion of Harmonia axyridis across this archipelago and(ii)determine what population of this species could have a higher probability of invading the islands.We used MaxEnt to project the climate requirements of different H.axyridis populations from three regions of the world,and the potential global niche of the species in the Azorean islands.Then we assessed the suitability of the islands for each of the three H.axyridis populations and global potential niche through histograms analysis,Principal Component Analysis(PCA)of climate variables,and a variable-by-variable assessment of the suitability response curves compared with the climatic conditions of the Azores.Climatic conditions of the Azores are less suitable for the U.S.and native Asian populations of H.axyridis,and more suitable for European populations and the global potential niche.The PCA showed that the climatic conditions of the islands differed from the climatic requirements of H.axyridis.This difference is mainly explained by precipitation of the wettest month,isothermality,and the minimum temperature of the coldest month.We concluded that the climatic conditions of the Azores could have influenced the establishment and spread of H.axyridis on these islands from Europe.Our results showed that abiotic resistance represented by the climate of the potentially colonizable zones could hinder the establishment of invasive insects,but it could vary depending of the origin of the colonizing population.     

Adaptation or exaptation? The case of the human hand

A controversy of relevance to the study of biological form involves the concept of adaptation. This controversy is illustrated by the structure and function of the human hand. A review of the principal definitions of adaptation points to two main problems: (1) they are qualitative and make reference to the whole structure (or substructural feature) and (2) they are based on the idea of natural selection as a moulding factor. The first problem would be solved by a definition that encompasses quantitative measures of the effects of selection, drawing on new advances in the comparative method. The second problem is deeper and presents greater conceptual difficulties. I will argue that the idea of natural selection as a moulding factor depends on the notion of a genetic program for development. But regarding the hand, experimental evidence on limb development challenges the idea of a genetic program for skeletal pattern formation, undermining a simple application of standard adaptationist concepts. These considerations lead to a revised definition of adaptation and interpretation of the evolutionary determinants of the hand’s form.     

Can AFLP genome scans detect small islands of differentiation? The case of shell sculpture variation in the periwinkle Echinolittorina hawaiiensis

Genome scans have identified candidate regions of the genome undergoing selection in a wide variety of organisms, yet have rarely been applied to broadly dispersing marine organisms experiencing divergent selection pressures, where high recombination rates can reduce the extent of linkage disequilibrium (LD) and the ability to detect genomic regions under selection. The broadly dispersing periwinkle Echinolittorina hawaiiensis exhibits a heritable shell sculpture polymorphism that is correlated with environmental variation. To elucidate the genetic basis of phenotypic variation, a genome scan using over 1000 AFLP loci was conducted on smooth and sculptured snails from divergent habitats at four replicate sites. Approximately 5% of loci were identified as outliers with Dfdist, whereas no outliers were identified by BayeScan. Closer examination of the Dfdist outliers supported the conclusion that these loci were false positives. These results highlight the importance of controlling for Type I error using multiple outlier detection approaches, multitest corrections and replicate population comparisons. Assuming shell phenotypes have a genetic basis, our failure to detect outliers suggests that the life history of the target species needs to be considered when designing a genome scan.     

The hydrobioid freshwater gastropods (Caenogastropoda,Truncatelloidea) of Greece: new?records,taxonomic re-assessments using DNA sequence data and an update of?the IUCN Red List Categories

Hydrobioid freshwater gastropods were collected from mainland and insular Greece. Several threatened taxa, such as Graecoanatolica vegorriticola, Pseudamnicola negropontina, Pseudamnicola pieperi, Pseudobithynia eubooensis and Pseudoislamia balcanica, were recorded from new localities. Trichonia trichonica, which has been considered extinct from its type locality for the last twenty eight years, was re-discovered, whereas the presence of Daphniola exigua, G. vegorriticola, Marstoniopsis graeca, P. pieperi and Pseudobithynia trichonis in their type localities was verified. The taxonomic status of P. negropontina and the newly discovered populations of G. vegorriticola was elucidated using COI sequence data. The new data recorded during this survey indicate that the IUCN status of some Greek endemic hydrobioids needs to be updated.     

The evolution of life cycle complexity in aphids: Ecological optimization or historical constraint?

For decades, biologists have debated why many parasites have obligate multihost life cycles. Here, we use comparative phylogenetic analyses of aphids to evaluate the roles of ecological optimization and historical constraint in the evolution of life cycle complexity. If life cycle complexity is adaptive, it should be evolutionarily labile, that is, change in response to selection. We provide evidence that this is true in some aphids (aphidines), but not others (nonaphidines)—groups that differ in the intensity of their relationships with primary hosts. Next, we test specific mechanisms by which life cycle complexity could be adaptive or a constraint. We find that among aphidines there is a strong association between complex life cycles and polyphagy but only a weak correlation between life cycle complexity and reproductive mode. In contrast, among nonaphidines the relationship between life cycle complexity and host breadth is weak but the association between complex life cycles and sexual reproduction is strong. Thus, although the adaptiveness of life cycle complexity appears to be lineage specific, across aphids, life cycle evolution appears to be tightly linked with the evolution of other important natural history traits.     

Can the preservation of historical relicts permit the conservation of endangered plant species? The case of <Emphasis Type="Italic">Silene sennenii</Emphasis> (Caryophyllaceae)

Allozyme electrophoresis was used to measure levels and distribution of genetic diversity in the critically endangered (CR) Silene sennenii (Caryophyllaceae), a narrow endemic plant species found in northeastern Catalonia (Spain). At present, only 5 populations remain, containing no more than 5,000 individuals, which are subjected to several human pressures such as habitat fragmentation and land use changes. Interestingly, the largest population is located in and around a fortress built in the XVIII century, a circumstance which might facilitated its preservation until now. From the 21 satisfactorily interpreted loci, low levels of genetic variation were detected (P = 20.9, A = 1.31 and H _e = 0.071), which may be related to small population size, isolation, and fragmentation of extant populations. Moderate to high levels of inbreeding were also found, probably as consequence of the population’s genetic structuring. The conservation of the population located in the fortress would allow the preservation of all the alleles detected at species level; nevertheless, conservation of other populations, coupled with the inclusion of S. sennenii in the Spanish Catalogue of Endangered Species, would also be desirable in order to ensure the long-term survival of the species.     

Conservation genetics of two island endemic Ribes spp. (Grossulariaceae) of Sardinia: survival or extinction?

Measuring levels of population genetic diversity is an important step for assessing the conservation status of rare or endangered plant species and implementing appropriate conservation strategies. Populations of Ribes multiflorum subsp. sandalioticum and R. sardoum, two endangered endemic species from Sardinia, representing the whole genus on the island, were investigated using ISSR and SSR markers to determine levels and structure of genetic variability in their natural populations. Results indicated medium to low genetic diversity at the population level: Nei's gene diversity for ISSR markers ranged from 0.0840 to 0.1316; the expected heterozygosity (H_E) for SSR ranged from 0.4281 to 0.7012. In addition, only one remnant population of R. sardoum showed a high level of inbreeding, in accordance with its very small size. Regarding the structure of the six R. sandalioticum populations, both principal coordinates analysis (PCoA) and STRUCTURE analysis of ISSR and SSR data highlighted low population structure, although two populations appeared to be clearly distinct from the others. The genetic pattern of the two taxa associated with their different ecological positions indicated resilience of R. sandalioticum populations in fresh and humid habitats and uncertain future resistance for the residual R. sardoum population in xeric calcareous stands. Hence, this study highlights the importance of an integrated conservation approach (genetic plus in situ and ex situ conservation studies/measures) for activating management programmes in these endemic and threatened taxa that can be considered as crop wild relatives of cultivated Ribes species.     

Is the invasion of Prorocentrum minimum (Dinophyceae) related to the nitrogen enrichment of the Baltic Sea?

The abundance of the invasive, bloom-forming dinoflagellate Prorocentrum minimum (Pavillard) Schiller and triangular, oval, and oval-round cell shapes were examined relative to salinity, temperature, and nutrient concentrations at the selected sites in the Baltic Sea. Based on the multiple regression and multivariate statistical analysis, all cell shapes of P. minimum had highly similar distribution relative to these environmental parameters as well as chlorophyll-a, nitrite + nitrate, ammonium, total nitrogen, phosphate, total phosphorus, and silicate. The species was related positively to total nitrogen, and negatively to salinity, temperature, nitrite + nitrate, and silicate:total nitrogen ratio. The results suggest that P. minimum could well adapt to low salinity and temperature and occurred particularly in coastal waters, rich in total nitrogen relative to silicate or other inorganic nutrients. These results indicate that the recent invasion of P. minimum into the Baltic Sea could have been enhanced by the DON enrichment. The results also support the suggestion that P. minimum is one morphospecies with no distinct subtaxa.     

Did the parasitoid Pnigalio mediterraneus (Hymenoptera: Eulophidae) track the invasion of the horse chestnut leafminer?

How communities of natural enemies, such as parasitoids, adapt to the range expansion of their hosts or the arrival of a novel invasive host is an important question in invasion biology. Do parasitoids track the expansion of their hosts from their shared native range? Do they locally adapt both behaviorally and physiologically to the arrival of a novel species by shifting hosts? Few studies have addressed those questions, yet they are important to develop efficient methods to manage invasive species. Here we focus on Pnigalio mediterraneus Ferriére and Delucchi (Hymenoptera: Eulophidae), an important parasitoid of two major agricultural and ornamental pests, the olive fruit fly Bactrocera oleae Rossi (Diptera: Tephritidae) and the horse chestnut leafminer Cameraria ohridella Deschka & Dimic (Lepidoptera: Gracillariidae). C. ohridella recently invaded Europe starting from the Southern Balkans, whereas B. oleae has been associated since the Quaternary with wild olives in the Mediterranean, where it largely spread after the domestication of cultivated olives. We used two markers, the ribosomal spacer ITS2 and the mitochondrial gene COI. Although the ITS2 dataset provided little variation and no phylogeographic signal, analysis of mtDNA of 188 individuals of P. mediterraneus from 54 European localities allowed us to identify 53 haplotypes. Both nucleotide and haplotype diversity were higher for Mediterranean samples, and from samples reared from B. oleae. The statistical parsimony network identified one haplotype as the most frequent, ancestral and mainly associated with C. ohridella. Our findings suggest that P. mediterraneus locally host switched to C. ohridella from other hosts in the Balkans and later tracked the horse chestnut leafminer invasion over Europe. Therefore both host-tracking and ecological sorting could explain the current distribution of P. mediterraneus haplotypes.