Five-year study on the autumn food habits of the Asiatic black bear in relation to nut production

We studied the autumn food habits of the Asiatic black bear (Ursus thibetanus) from 1993 to 1997, based on 202 fecal samples in the Chichibu Mountains, central Japan. Nuts occupied the highest proportions of autumn foods (59.9–85.8% important values). Although the proportion of nuts of Quercus crispula, Fagus crenata and Fagus japonica varied greatly between the years, acorns of Q.crispula were most prevalent in four of the five years. We also determined the relative nut production of these three species by counting the number of nuts or cupules on the ground. Black bears consumed the nuts according to their relative availabilities. Nuts of Q.crispula appeared to be the most important food because: (i) these nuts were eaten in the highest proportion in four of the five study years; and (ii) even in poor years the bears consumed acorns of Q.crispula, whereas nuts of Fagus spp. were not consumed. We discuss the significance of alternative foods for black bears in relation to food tree diversity in the forest and the necessity for long-term studies examining the food habits of Asiatic black bears.     

Fruit phenology of Prunus jamasakura and the feeding habit of the Asiatic black bear as a seed disperser

We investigated the relationship between the fruit phenology of Prunus jamasakura and the fruit-feeding period of the Asiatic black bear (Ursus thibetanus). The purposes of this study were to determine (1) when bears feed on the fruit of P. jamasakura in relation to phenology; (2) whether ingestion damages seeds; and (3) how ingestion influences seed germination. We assessed the relationship between the phenology of fruit maturation (size, sugar concentration, color, persistence, and germination percentage) and the feeding period of bears in the field, as judged from bear shelves and claw marks. We also compared the germination percentage of seeds ingested by captive bears with that of uningested. Bears fed on the fruit from days 50 to 66 after flowering, when most of the fruits were on the tree and became large, the germination percentage of seeds increased, and the sugar concentration became high. Bears fed only on mature fruits and so obtained high-quality nutrients. Germination tests showed that ingestion of fruits by the bears caused no physical damage to the seeds. Ingested seeds did not show a significant difference in germination percentage from seeds, whose pulp was artificially removed. These results indicate that bears are potentially effective dispersers from a qualitative perspective and, to some extent, from a quantitative perspective.     

Global-scale genetic identification of hammerhead sharks: Application to assessment of the international fin trade and law enforcement

The future status of sharks is an issue of widespread conservation concern due to declines in many species in the face of high levels of exploitation to satisfy market demands for products, especially fins. Substantial declines in the large-bodied hammerhead sharks, Sphyrna lewini, S. mokarran and S. zygaena, even in regions where some management occurs, indicate that informed conservation measures are warranted for these circumglobally distributed species. Despite the importance of assessing shark catch and trade on a species-specific basis to detect potential overexploitation of individual species, achieving this goal for hammerheads has proven elusive due to difficulties in identification of their products. Here, we present the development and application of a diagnostic, streamlined, five-primer multiplex polymerase chain reaction assay utilizing species-specific primers based on nuclear ribosomal ITS2 for the three hammerhead species throughout their global distribution. Application of this assay to investigations of the fin market confirmed the presence of hammerhead fins in the international trade. A study of the world’s largest fin market in Hong Kong revealed a high concordance between specific Chinese-name trade categories and fins from these three species (“Bai Chun” with S. lewini, “Gui Chun” with S. zygaena and “Gu Pian” with S.␣mokarran), and clear species preferences. This concordance information allows the use of market records for monitoring species-specific trends in trade and exploitation rates. The assay is also proving useful for identification of shark body parts in U.S. fisheries law-enforcement activities. Screening of morphologically identified “ S. lewini” from globally distributed areas using this assay with subsequent whole ITS2 sequencing suggests a cryptic species closely related to S. lewini occurs off the SE USA coast.     

Illegal wildlife trade in the Himalayan region of China

The Himalayan region of China, with its rich biodiversity, used to be important for hunting and collecting of medicinal plants. In the past decades, conservation attitudes and legislation for wildlife conservation have developed rapidly in China. Increasing numbers of species are listed in the state protection list and local protection lists. In the Himalayan region, the area of natural reserves is high accounting for 70% of total area of natural reserves in China. However, wildlife in Himalayan region is suffering from illegal hunting and trade even after China has enforced the China Wildlife Protection Law (CWPL). The illegal wildlife trade and smuggling across Sino-neighbouring country borders and illegal wildlife trade related to domestic use flourish in the region. Although domestic illegal trade has declined in the past ten years, international illegal trade and smuggling continue, and are even expanding, thereby threatening survival of many endangered species such as the Tibetan antelope (Pantholops hodgsoni), Giant panda (Ailuropoda melanoleuca) and Saker Falcon (Falco cherrug). Illegal wildlife trade in the region is attributed to four factors. First, the CWPL is still imperfect, especially concerning illegal trade and smuggling across borders. Second, CWPL is not fully enforced. Third, infrastructure in many nature reserves is undeveloped and human resources are lacking. Fourth, protection is hampered by differences in the laws of neighbouring countries, differences in penalties and in degrees of protection. Furthermore, national legislation is often not fully enforced in areas that are inhabited mainly by tribal and minority communities.     

The effects of primiparity on reproductive performance in the brown bear

We studied the effects of primiparity on litter size, offspring size, and cub loss in brown bears (Ursus arctos) in two study areas (north, south) in Sweden from 1987 to 2006. Sexually selected infanticide (SSI) has been suggested previously as a mortality factor in our study populations. Females in the south became primiparous earlier than females in the north. Primiparous females had significantly smaller litters of cubs than multiparous females. We found no evidence that primiparity was costly in terms of the interlitter interval. Primiparous mothers had a higher probability of cub loss than multiparous mothers. The probability of cub loss was analyzed separately for the pre-mating and the mating season. The probability of cub loss by primiparous females in the pre-mating season increased with both increasing population density and deteriorating food conditions, whereas the probability of cub loss during the mating season decreased with increasing age of primiparity and increased with male turnover (a variable predicting SSI). The temporal patterns of cub loss by primiparous females suggested that the critical times for reproductive success by primiparous females were the pre-mating season (from birth to shortly after leaving the den) and the mating season. Cub loss in these periods was independent and caused by different factors. Cub loss before the mating season seemed to be most influenced by food conditions, whereas that during the mating season appeared to be caused by SSI.     

Genetic characterisation of Toxoplasma gondii in wildlife from North America revealed widespread and high prevalence of the fourth clonal type

Little is known of the genetic diversity of Toxoplasma gondii circulating in wildlife. In the present study wild animals, from the USA were examined for T. gondii infection. Tissues of naturally exposed animals were bioassayed in mice for isolation of viable parasites. Viable T. gondii was isolated from 31 animals including, to our knowledge for the first time, from a bald eagle (Haliaeetus leucocephalus), five gray wolves (Canis lupus), a woodrat (Neotoma micropus), and five Arctic foxes (Alopex lagopus). Additionally, 66 T. gondii isolates obtained previously, but not genetically characterised, were revived in mice. Toxoplasma gondii DNA isolated from these 97 samples (31 + 66) was characterised using 11 PCR-restriction fragment length polymorphism (RFLP) markers (SAG1, 5′- and 3′-SAG2, alt.SAG2, SAG3, BTUB, GRA6, c22–8, c29–2, L358, PK1 and Apico). A total of 95 isolates were successfully genotyped. In addition to clonal Types II, and III, 12 different genotypes were found. These genotype data were combined with 74 T. gondii isolates previously characterised from wildlife from North America and a composite data set of 169 isolates comprised 22 genotypes, including clonal Types II, III and 20 atypical genotypes. Phylogenetic network analysis showed limited diversity with dominance of a recently designated fourth clonal type (Type 12) in North America, followed by the Type II and III lineages. These three major lineages together accounted for 85% of strains in North America. The Type 12 lineage includes previously identified Type A and X strains from sea otters. This study revealed that the Type 12 lineage accounts for 46.7% (79/169) of isolates and is dominant in wildlife of North America. No clonal Type I strain was identified among these wildlife isolates. These results suggest that T. gondii strains in wildlife from North America have limited diversity, with the occurrence of only a few major clonal types.     

The early bear gets the goose: climate change,polar bears and lesser snow geese in western Hudson Bay

As climate change advances the date of spring breakup in Hudson Bay, polar bears are coming ashore earlier. Since they would have lost some of their opportunities to hunt ringed seals from a sea ice platform, they may be deficient in energy. Subadult polar bears appear to come ashore before more mature individuals and the earliest subadults are beginning to overlap the nesting period of the large colony of snow geese also occupying the Cape Churchill Peninsula. The eggs these bears are known to eat could make up some of their energy shortfall. The earlier these eggs are consumed during the snow goose nesting period, the greater would be the energy that is available. Recent studies have shown that the annual survival rate for subadult bears declined in contrast to that of prime aged individuals. If this reduction in survival is related to an increasing energy deficit, as suggested by some, the consumption of goose eggs may reverse the trend and help stabilize the population, at least for some period of time. The total number of polar bears that could benefit from this resource will depend on the increasing temporal overlap with the nesting period and on the foraging behaviors of individuals eating the eggs. It is likely that other food sources will also have to play a role if the polar bears are to persist.     

Characterization of 29 tetranucleotide microsatellite loci in black bear (Ursus americanus) for use in forensic and population applications

We developed 29 forensic quality tetranucleotide microsatellite loci for the identification of individual black bear (Ursus americanus). Allele number averaged 5.35 and ranged from 3 to 11. The eight markers selected for forensic use permit the identification and exclusion of individual bear with a probability of identity of approximately 8.1 × 10⁻⁸ (approximately one per 12 million).     

Non-invasive genetic study of the endangered Cantabrian brown bear (Ursus arctos)

The Brown Bear (Ursus arctos) population present in the Cantabrian Mountains has suffered a dramatic decline in recent centuries and is now threatened with extinction. This situation has led to the development and implementation of a species recovery plan. To accomplish this plan, we need to improve our knowledge about the ecology, demography and genetics of this population. This paper presents the genetic analysis of the Cantabrian brown bear population using non-invasive samples (faeces and hairs) collected between 2004 and 2006. It was necessary to optimize a set of 18 microsatellite loci and a sex marker (several new multiplex reactions were developed) to obtain a suitable probability of identity among genotypes to work with this small, deeply structured population. Genotyping of 48 individuals was carried out using a two-step PCR protocol to increase the quality of the multilocus genotypes. Validation of genotypes was performed using a multi-tube approach combined with different software programmes to measure their error rate and reliability. Diversity in the Cantabrian population was low (H _e = 0.51) and the population was markedly subdivided into two subpopulations (western and eastern) without current gene flow between them. The level of divergence between the two subpopulations (F _st = 0.41) and the extremely low diversity in the eastern group (H _e = 0.25) indicate that this has had an extremely low effective population size and had been isolated from the main group during the last century. Connectivity between the two subpopulations will be of prime importance for the long-term survival of this species in the Cantabrian Mountains.     

Maintenance of high levels of allelic variation in spite of a severe bottleneck in population size: the brown bear (Ursus arctos) in the Western Carpathians

Genetic variation in an isolated brown bear population of the Western Carpathians was studied by electrophoretic analysis of 51 presumptive allozyme loci. In spite of a severe population bottleneck at the beginning of the 1930s (40 survivors), average heterozygosity (H=5.3%) was within the range commonly found in mammals and the mean number of alleles per polymorphic locus (A_p=3, over five polymorphic loci) was very high. Possible reasons for the maintenance of high allelic variation are discussed.     

Abnormal Fossil Upper Molar of Pongo from Thailand: Quaternary Climatic Changes in Southeast Asia as a Possible Cause

We interpret an unusual left M ³ attributed to Pongo from the Late Middle Pleistocene of Thailand to be an abnormal tooth rather than a supernumerary molar. Its peculiar morphology cannot be related to classical known causes that affect the dental germ: Gemination, schizodontia, synodontia. The ontogenic mechanism that might have led to the morphology of the tooth perhaps reflects stress related to a phase of marked climatic changes during the Late Middle Pleistocene in Southeast Asia.     

An additional specimen of a large-bodied Miocene hominoid from Chiang Muan, northern Thailand

Chiang Muan is the first Miocene fossil site in Southeast Asia, from which large-bodied Miocene hominoids have been discovered (Kunimatsu et al., Primate Res 16:299, 2000a). In this article, we describe a hominoid lower molar (CMu15-501) recovered from the Upper Lignite Member of Chiang Muan. The age of Chiang Muan is estimated to be latest Middle or earliest Late Miocene (around 11 Ma), based on the mammalian fauna.This revised version was published online in April 2005 with corrections to the cover date of the issue.     

Using a reference population yardstick to calibrate and compare genetic diversity reported in different studies: an example from the brown bear

In species with large geographic ranges, genetic diversity of different populations may be well studied, but differences in loci and sample sizes can make the results of different studies difficult to compare. Yet, such comparisons are important for assessing the status of populations of conservation concern. We propose a simple approach of using a single well-studied reference population as a ‘yardstick'' to calibrate results of different studies to the same scale, enabling comparisons. We use a well-studied large carnivore, the brown bear (Ursus arctos), as a case study to demonstrate the approach. As a reference population, we genotyped 513 brown bears from Slovenia using 20 polymorphic microsatellite loci. We used this data set to calibrate and compare heterozygosity and allelic richness for 30 brown bear populations from 10 different studies across the global distribution of the species. The simplicity of the reference population approach makes it useful for other species, enabling comparisons of genetic diversity estimates between previously incompatible studies and improving our understanding of how genetic diversity is distributed throughout a species range.     

Clarifying marine invasions with molecular markers: an illustration based on mtDNA from mistaken calyptraeid gastropod identifications

Species invasions are occurring at an increasing rate in coastal environments. Accurately identifying introductions is a critical issue to take full advantage of the new invasion databases. Further, life history differences between morphologically comparable species may require that different management strategies be instigated to effectively control different species. Facing this problem, we used molecular approaches and documented a case of mistaken identification in a group of marine invertebrates, the calyptraeid gastropods. Members of this group have repeatedly and successfully invaded new habitats after anthropogenic introduction, especially in estuaries and bays on the west coast of the United States of America. For example, Crepidula fornicata, native to the east coast of the USA, has been reported from at least five USA west coast estuaries. We sequenced a fragment of the COI gene of a sample of putative C. fornicata from Humboldt Bay, California. By constructing a phylogeny of these and other calpytraeid gastropod sequences, we discovered that the individuals were C. convexa, the convex slippershell. In contrast to C. fornicata, C. convexa has large, demersal eggs and larvae are well developed at hatching. Its potential for dispersal is therefore lower as compared to C. fornicata and therefore any strategy to manage the invasion should take this into account. In the present study, we demonstrated the utility of molecular tools that can be used by non-taxonomic experts, to quickly and accurately identify alien species – an important first step in any study of invasion biology.     

Dasyatis laosensis,a new whiptailed stingray (family Dasyatidae), from the Mekong River of Laos and Thailand

Synopsis Dasyatis laosensis, a new species, is described from the Mekong River where it forms the border between Laos and Thailand. It is the first member of the genus Dasyatis to be described as an endemic freshwater species from Southeast Asia. Bright orange color on the ventral surface of the disc and similar meristic characters indicate that it may be closely related to Dasyatis akajei, a marine species from southern Japan and China, and to Dasyatis sp. undetermined, from the West River in Guangxi, southern China.     

The role of traditional forest gardens in the conservation of tree species in West Kalimantan, Indonesia

We compared forest gardens, or tembawang, in twoareas in West Kalimantan, Indonesia, to patches of primary forest in terms ofsuccessional stage, mode of dispersal and characteristics of human use ofnon-planted tree species. This information was acquired for 144 tree speciesinventoried in six tembawang forest gardens and two intactnatural forest patches, through interviews at the site and a survey of theliterature. In particular older tembawang were found tohave practically the same proportions of species of different successionalstages and modes of dispersal as natural forests, thus emphasising the potentialof tembawang in conserving tree species. Non-planted treespecies of tembawang and natural forests also havepractically indistinguishable spectra of human uses, indicating that themanagement of these tembawang does not significantlydiscriminate between species with certain uses. However, we also identified twoaspects that should be taken into account in considering the conservation roleof tembawang. The floras of the two study areas showedsignificant regional differentiation, implying that efficient conservation inWest Kalimantan needs to have a rather dense network. We also found that latesuccessional species and animal-dispersed species oftembawang were more commonly geographically widespread thanspecies of the same ecological characteristics found in natural forests. Thus,even if tembawang are similar to natural forests in termsof numbers of species with different ecological characteristics, the compositionof non-planted tree species in tembawang is not a randomsample from natural forest, but overrepresents species that are easily dispersedand/or established.     

Establishing the foundation for an applied molecular taxonomy of otters in Southeast Asia

Four species of otters (Mustelidae, Lutrinae) occur in Southeast Asia and are considered to be of conservation concern: Aonyx cinerea (Asian small-clawed otter), Lutra lutra (Eurasian otter), Lutra sumatrana (Hairy-nosed otter), and Lutrogale perspicillata (Smooth-coated otter). Among these, L. sumatrana is endemic to the region, yet little is known about its biology, and the precise distribution of all four species in Southeast Asia is not well known. Furthermore, the taxonomy and systematics of L. sumatrana and L. perspicillata have been the subject of controversy, which has implications for the legal protection and for conservation programs of these taxa. To resolve these controversies, we used a multigene data set comprised of segments from 13 nuclear and 5 mitochondrial loci (11,180 nucleotides) to evaluate the phylogenetic relationships of Asian Old World otters. Phylogenies were also estimated using two mitochondrial loci (1,832 nucleotides) obtained from two or more individuals of the four Southeast Asian species. The results from maximum parsimony, maximum likelihood and Bayesian inference showed that L. sumatrana and L. lutra are sister taxa, whereas L. perspicillata is sister to A. cinerea. Furthermore, the results from the two-mitochondrial gene analyses indicate that L. sumatrana is reciprocally monophyletic with respect to L. lutra, supporting the specific validity of the former taxon. Signs such as tracks and feces are often used in field surveys to provide information on the distribution and abundance of otters, but the accuracy of these methods may be compromised when several closely related species occur sympatrically. Therefore, the two-gene data set was used to develop a provisional set of diagnostic nucleotides that can be potentially used to identify the four species of Southeast Asian otters from noninvasively collected biological samples, such as feces. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Effects of food distribution on the habitat usage of a female brown bear Ursus arctos yesoensis in a beech-forest zone of northernmost Japan

The habitat usage of a female brown bear, Ursus arctos yesoensis L., was studied in relation to the distribution of food plants in a beech-forest zone of Hokkaido, Japan. The bears habitat usage was correlated with the distribution of the plant Angelica ursina (Rupt.) Maxim. in summer. In spring the bear preferred Petasites japonicus (Sieb. et Zucc.) Maxim. and Heracleum dulce Fisch., whose abundance did not differ significantly between Sasa–beech forests and coniferous forests. However, the bear spent more time in coniferous forests where its den site was located. In autumn, this bear preferred the plant Actinidia arguta (Sieb. et Zucc.) Planch. ex Mig., which was abundant in maple–linden forests, however, the bears habitat usage was not correlated with the distribution of A. arguta because it frequently returned to an overlapping area where A. arguta was scarce. Thus, the bears habitat usage depended on food distribution as well as on the location of the den site and the behavioral core area.