Divergent landscape effects on population connectivity in two co-occurring amphibian species

The physical and environmental attributes of landscapes often shape patterns of population connectivity by influencing dispersal and gene flow. Landscape effects on movement are typically evaluated for single species. However, inferences from multiple species are required for multi‐species management strategies increasingly being applied in conservation. In this study, I compared the spatial genetic patterns of two amphibian species across the northeastern United States and estimated the influence of specific landscape features on the observed genetic structure. The spotted salamander (Ambystoma maculatum) and wood frog (Rana sylvatica) share many ecological attributes related to habitat use, phenology and site fidelity. However, I hypothesized that important differences in their movement patterns and life history would create distinct genetic patterns for each species. Using 14 microsatellite loci, I tested for differences in the level of genetic differentiation between the two species across 22 breeding ponds. The effects of eight landscape features were also estimated by evaluating 32 landscape resistance models. Spotted salamanders exhibited significantly higher genetic differentiation than wood frogs. Different landscape features were also identified as potential drivers of the genetic patterns in each species, with little overlap in model support between species. Collectively, these results provide strong evidence that these two amphibian species interact with the landscape in measurably different ways. The distinct genetic patterns observed are consistent with key differences in movement ability and life history between A. maculatum and R. sylvatica. These results highlight the importance of considering more than one species when assessing the impacts of the landscape matrix on population connectivity, even for ecologically similar species within the same habitats.     

Towed-float satellite telemetry tracks large-scale movement and habitat connectivity of myliobatid stingrays

Batoids are important mesopredators whose high mobility and extensive migrations can link seemingly distant food webs in coastal ecosystems. Despite this recognition, our knowledge of the movement patterns of many species is limited due to the logistical challenge of tracking these animals on multiple scales. Smart Positioning or Temperature (SPOT) satellite-linked transmitters allow for precise, multi-scale tracking of species that regularly use surface waters. To date, SPOTs have been predominantly used on sharks, with only a single application to a batoid. Given the epipelagic nature of myliobatid stingrays, we examined the potential for towed-float SPOT transmitters to monitor large-scale movements of two representative species: the Cownose Ray (Rhinoptera bonasus; n?=?15) and Spotted Eagle Ray (Aetobatus narinari; n?=?9). Tracking data identified several consistent outmigration patterns of Cownose Rays along the Mississippi-Alabama shelf and seasonal variation in movement rates along barrier island habitats. We also documented sex-related differences in movement rates and habitat use of Spotted Eagle Rays along the Bermuda platform, where males exhibited significantly higher movement rates than females and more transient behavior between inshore lagoons and outer coral reefs. Both Cownose and Spotted Eagle Rays were shown to exhibit connectivity among several habitat types along continental shelves in their respective locales, demonstrating future challenges to the management of these species over large spatial scales. While reductions in tag size and improved tethering techniques would undoubtedly broaden the applicability of towed-float satellite telemetry to other species and sizes, our work highlights the strong potential for this technology to provide insights into the spatial ecology and habitat use of myliobatid rays.     

Historical habitat connectivity affects current genetic structure in a grassland species

Many recent studies have explored the effects of present and past landscape structure on species distribution and diversity. However, we know little about the effects of past landscape structure on distribution of genetic diversity within and between populations of a single species. Here we describe the relationship between present and past landscape structure (landscape connectivity and habitat size estimated from historical maps) and current genetic structure in a perennial herb, Succisa pratensis. We used allozymes as co‐dominant markers to estimate genetic diversity and deviation from Hardy–Weinberg equilibrium in 31 populations distributed within a 5 km² agricultural landscape. The results showed that current genetic diversity of populations was related to habitat suitability, habitat age, habitat size and habitat connectivity in the past. The effects of habitat age and past connectivity on genetic diversity were in most cases also significant after taking the current landscape structure into account. Moreover, current genetic similarity between populations was affected by past connectivity after accounting for current landscape structure. In both cases, the oldest time layer (1850) was the most informative. Most populations showed heterozygote excess, indicating disequilibrium due to recent gene flow or selection against homozygotes. These results suggest that habitat age and past connectivity are important determinants of distribution of genetic diversity between populations at a scale of a few kilometres. Landscape history may significantly contribute to our understanding of distribution of current genetic structure within species and the genetic structure may be used to better understand landscape history, even at a small scale.     

Linking movement and reproductive history of brook trout to assess habitat connectivity in a heterogeneous stream network

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Modeling spatial distribution of amphibian populations: a GIS approach based on habitat matrix permeability

Predictions of occurrence of two amphibian species, the common toad and the alpine newt, were made using information on land use surrounding breeding ponds. A geographical information system (GIS) was used to compile a landuse map, from which permeability estimates (friction) were derived. Potential migration zones based on friction and maximum migration distance were then modeled. Contacts between several migration zones suggest the potential for migration between ponds by adult individuals. The ability of the migration zones to enhance predictions of species occurrence was tested using generalized additive models (GAMs), and several landscape variables were selected as determinants of amphibian presence. The area of a migration zone and the number of ponds within that zone were positively related to both toad and newt presence, suggesting the importance of buffer habitats around each pond in amphibian conservation. Toad presence declined with cultivated field area and newt presence declined with vineyard area, suggesting the negative effect of agricultural activity on amphibians. The friction-based modeling approach improved the prediction of toad presence when compared to a more classical analysis of habitat composition within a circular zone centered on the focal pond. Prediction of newt presence was, however, less accurate than prediction of toad presence. Despite its exploratory nature and the subjectivity of permeability estimates, this study shows the usefulness of GIS in the functional analysis of a landscape, with potential applications in biological conservation. It also highlights the need for improving our knowledge of habitat use by animals.     

Incorporating asymmetric movement costs into measures of habitat connectivity to assess impacts of hydrologic alteration to stream fishes

Aim

Hydrologic alterations are widespread in freshwater ecosystems worldwide and often detrimentally impact fish populations. Habitat suitability models are commonly used to assess these impacts, but these models frequently rely upon observed fish–habitat relationships rather than more mechanistic underpinnings. The aim of this study was to demonstrate how to incorporate swim performance into a measure of habitat connectivity at a fine scale, providing a method for assessing the availability of suitable habitat for stream fishes.

Location

We applied this technique to an endangered species, the Western Silvery Minnow Hybognathus argyritis, in the Milk River of southern Alberta, Canada. The Milk River is an augmented system, where a diversion in nearby St. Mary River augments flow by a factor >3 × (from 1–5 m³/s to 15–20 m³/s).

Methods

We used laboratory measured swim performance of Western Silvery Minnow to develop a movement cost function that was used in conjunction with a habitat suitability model to assess habitat availability via a recently developed graph‐theoretic metric, equivalent connected area (ECA).

Results

Stream augmentation altered not only habitat suitability but also habitat connectivity for this species. During augmentation, suitable habitat area declined by 81.3%. Changes in habitat connectivity were site dependent. Movement costs between habitat patches were lower during augmentation due to current‐assisted dispersal and increased distance to patches during natural flows from dried streambeds. When movement costs were incorporated into ECA, ECA decreased by 78.0% during augmentation.

Main conclusions

With changing climate and increasing anthropogenic impacts on aquatic ecosystems, understanding how freshwater fishes relate to their habitat is critical for appropriate management. In many cases, such as the Western Silvery Minnow, mitigating habitat suitability may not be sufficient, as species are unable to reach suitable habitat. The incorporation of swim performance into habitat connectivity assessments, as carried out here, can be easily adapted to other species and situations and can improve the understanding of impacts to stream fishes and increase the effectiveness of mitigation efforts.     

Forest and connectivity loss drive changes in movement behavior of bird species

In a rapidly changing world, it is important to understand how environmental modifications by humans affect species behavior. This is not a simple task, since we need to deal with a multitude of species and the different external contexts that affect their behavior. Here, we investigate how interpatch short-distance movements of 73 common forest bird species can be predicted by forest cover and forest isolation. We modeled bird movement as a function of environmental covariates, species traits – body mass and feeding habit – and phylogenetic relationships using Joint Species Movement Models. We used field data collected in forest edges and open pastures of six 600 × 600 m plots in the Atlantic Forest biodiversity hotspot. We found that birds fly larger distances and visit more forest patches and remnant trees with decreasing forest cover. Increasing landscape isolation results in larger flight distances, and it increases the use of trees as stepping-stones for most species. Our results show that birds can adjust their behavior as a response to spatial modification in resource distribution and landscape connectivity. These adjusted behaviors can potentially contribute to ecosystem responses to habitat modification.     

Combining environmental suitability and habitat connectivity to map rare or Data Deficient species in the Tropics

The IUCN Red List is a widely accepted system for classifying species’ risk of extinction, based on quantitative criteria. Although IUCN discourages the liberal use of the category “Data Deficient” (DD), most assessed groups have a large number of their species assigned to this category, especially in the Tropics. Therefore, DD species can introduce considerable uncertainty into estimates of proportions of threatened species, and research focused on elucidating the true status of those species should be a priority. Here we propose a simple method to gather information on geographic distribution and guide the search for new populations of rare, small-ranged, forest species, using the literature, online data, and standard GIS procedures. The method involves: (i) creating a geographic distribution model; (ii) selecting the environmentally suitable sites from that model; (iii) removing sites that have lost natural vegetation; and (iv) removing habitat networks that are too small and/or isolated, based on thresholds established from known occurrence records and the literature for ecologically similar species. As a case study, we use Lonchophylla peracchii, a recently described forest-dependent bat endemic to southeastern Brazil. We found that environmentally suitable sites for L. peracchii are already heavily deforested, confirming habitat loss as a major threat. Importantly, we identified five priority sites to search for the species outside of its currently known distribution. From that, we discuss its likely status based on IUCN's Criterion B2 (Extent of Occurrence). This method could be useful for other poorly known forest species, especially in the Tropics where most of these species are, and funding for research and fieldwork is scarcest. Currently there are 1910 terrestrial vertebrates in tropical forest worldwide classified as DD that could be evaluated using this method, provided that they have at least 5–10 occurrence records.     

Modeling ring puckering in strained systems: application to 3,6-anhydroglycosides

Different conformations of methyl 3,6-anhydroglycosides with the beta-D-galacto, alpha-D-galacto, and beta-D-gluco configurations were studied by molecular mechanics (using the program mm3) and by quantum mechanical (QM) methods at the HF/- and B3LYP/6-31+G** levels, with and without solvent emulation. Using molecular mechanics, the energies were plotted against the phi, theta puckering coordinates of Cremer and Pople. In such strained systems, only two extreme conformations of the six-membered ring are likely: (1)C(4) and B(1,4), or any one close to either of them. Results show the preponderance of a distorted chair conformation over that of the distorted boat, though the energy difference is lower and the distortions are larger for the compound with the beta-D-galacto configuration. For derivatives of this compound, experimental data in solution indicate both chair and boat forms, depending on the compound and the solvent, whereas for the remaining compounds, experimental data always show the preponderance of the chair conformation. The more accurate DFT calculations lead to the lower energy differences, suggesting that HF and MM3 underestimate the stability of the boat-like conformations. Similar studies on model compounds depict the importance of the anomeric effect in the conformational preferences.     

Turning passive detection systems into field experiments: an application using wetland fishes and enclosures to track fine-scale movement and habitat choice

Understanding habitat selection and movement remains a key question in behavioral ecology. Yet, obtaining a sufficiently high spatiotemporal resolution of the movement paths of organisms remains a major challenge, despite recent technological advances. Observing fine-scale movement and habitat choice decisions in the field can prove to be difficult and expensive, particularly in expansive habitats such as wetlands. We describe the application of passive integrated transponder (PIT) systems to field enclosures for tracking detailed fish behaviors in an experimental setting. PIT systems have been applied to habitats with clear passageways, at fixed locations or in controlled laboratory and mesocosm settings, but their use in unconfined habitats and field-based experimental setups remains limited. In an Everglades enclosure, we continuously tracked the movement and habitat use of PIT-tagged centrarchids across three habitats of varying depth and complexity using multiple flatbed antennas for 14 days. Fish used all three habitats, with marked species-specific diel movement patterns across habitats, and short-lived movements that would be likely missed by other tracking techniques. Findings suggest that the application of PIT systems to field enclosures can be an insightful approach for gaining continuous, undisturbed and detailed movement data in unconfined habitats, and for experimentally manipulating both internal and external drivers of these behaviors.     

Sea surface temperature dictates movement and habitat connectivity of Atlantic cod in a coastal fjord system

While movements of organisms have been studied across a myriad of environments, information is often lacking regarding spatio‐seasonal patterning in complex temperate coastal systems. Highly mobile fish form an integral part of marine food webs providing linkages within and among habitats, between patches of habitats, and at different life stages. We investigated how movement, activity, and connectivity patterns of Atlantic cod (Gadus morhua) are influenced by dynamic environmental conditions. Movement patterns of 39 juvenile and subadult Atlantic cod were assessed in two coastal sites in the Swedish Skagerrak for 5 months. We used passive acoustic telemetry and network analysis to assess seasonal and spatial movement patterns of cod and their relationships to different environmental factors, using statistical correlations, analysis of recurrent spatial motifs, and generalized linear mixed models. Temperature, in combination with physical barriers, precludes significant connectivity (complex motifs) within the system. Sea surface temperature had a strong influence on connectivity (node strength, degree, and motif frequency), where changes from warmer summer waters to colder winter waters significantly reduced movement activity of fish. As the seasons changed, movement of fish gradually decreased from large‐scale (km) linkages in the summer to more localized movement patterns in the winter (limited to 100s m). Certain localized areas, however, were identified as important for connectivity throughout the whole study period, likely due to these multiple‐habitat areas fulfilling functions required for foraging and shelter. This study provides new knowledge regarding inshore movement dynamics of juvenile and subadult Atlantic cod that use complex, coastal fjord systems. The findings show that connectivity, seasonal patterns in particular, should be carefully considered when selecting conservation areas to promote marine stewardship.     

Modeling connectivity to identify current and future anthropogenic barriers to movement of large carnivores: A case study in the American Southwest

This study sought to identify critical areas for puma (Puma concolor) movement across the state of Arizona in the American Southwest and to identify those most likely to be impacted by current and future human land uses, particularly expanding urban development and associated increases in traffic volume. Human populations in this region are expanding rapidly, with the potential for urban centers and busy roads to increasingly act as barriers to demographic and genetic connectivity of large‐bodied, wide‐ranging carnivores such as pumas, whose long‐distance movements are likely to bring them into contact with human land uses and whose low tolerance both for and from humans may put them at risk unless opportunities for safe passage through or around human‐modified landscapes are present. Brownian bridge movement models based on global positioning system collar data collected during bouts of active movement and linear mixed models were used to model habitat quality for puma movement; then, a wall‐to‐wall application of circuit theory models was used to produce a continuous statewide estimate of connectivity for puma movement and to identify pinch points, or bottlenecks, that may be most at risk of impacts from current and future traffic volume and expanding development. Rugged, shrub‐ and scrub‐dominated regions were highlighted as those offering high quality movement habitat for pumas, and pinch points with the greatest potential impacts from expanding development and traffic, although widely distributed, were particularly prominent to the north and east of the city of Phoenix and along interstate highways in the western portion of the state. These pinch points likely constitute important conservation opportunities, where barriers to movement may cause disproportionate loss of connectivity, but also where actions such as placement of wildlife crossing structures or conservation easements could enhance connectivity and prevent detrimental impacts before they occur.     

Spatiotemporal variability of stream habitat and movement of three species of fish

Relationships between environmental variability and movement are poorly understood, due to both their complexity and the limited ecological scope of most movement studies. We studied movements of fantail (Etheostoma flabellare), riverweed (E. podostemone), and Roanoke darters (Percina roanoka) through two stream systems during two summers. We then related movement to variability in measured habitat attributes using logistic regression and exploratory data plots. We indexed habitat conditions at both microhabitat (i.e., patches of uniform depth, velocity, and substrate) and mesohabitat (i.e., riffle and pool channel units) spatial scales, and determined how local habitat conditions were affected by landscape spatial (i.e., longitudinal position, land use) and temporal contexts. Most spatial variability in habitat conditions and fish movement was unexplained by a site’s location on the landscape. Exceptions were microhabitat diversity, which was greater in the less-disturbed watershed, and riffle isolation and predator density in pools, which were greater at more-downstream sites. Habitat conditions and movement also exhibited only minor temporal variability, but the relative influences of habitat attributes on movement were quite variable over time. During the first year, movements of fantail and riverweed darters were triggered predominantly by loss of shallow microhabitats; whereas, during the second year, microhabitat diversity was more strongly related (though in opposite directions) to movement of these two species. Roanoke darters did not move in response to microhabitat-scale variables, presumably because of the species’ preference for deeper microhabitats that changed little over time. Conversely, movement of all species appeared to be constrained by riffle isolation and predator density in pools, two mesohabitat-scale attributes. Relationships between environmental variability and movement depended on both the spatiotemporal scale of consideration and the ecology of the species. Future studies that integrate across scales, taxa, and life-histories are likely to provide greater insight into movement ecology than will traditional, single-season, single-species approaches. The Virginia Cooperative Fish and Wildlife Research Unit is jointly sponsored by the US Geological Survey, Virginia Polytechnic Institute and State University, Virginia Department of Game and Inland Fisheries, and Wildlife Management Institute.     

The role of connectivity and physicochemical conditions in effective habitat of two exploited penaeid species

The value of estuarine habitats is often measured by their contribution to the adult component of the population, but a broader suite of attributes can also contribute to nursery function. Identifying and quantifying these elements allows habitat repair to be effectively targeted toward improving ecosystem function for desirable species. We present a study that incorporates stable isotopes and quantitative sampling to investigate the relative importance of different estuarine areas for juveniles of exploited prawn species within the context of habitat rehabilitation, and the potential drivers of these relationships. Eastern King Prawn (Penaeus [Melicertus] plebejus) and School Prawn (Metapenaeus macleayi) were studied for two years in the lower Hunter River estuary, on the temperate east coast of Australia. The higher salinity areas near the lower end of the estuary were most important for Eastern King Prawn, and marsh systems in the lower estuary were only important for the species where there was good connectivity with oceanic water. Areas along the estuary were important for juvenile School Prawn, especially marsh habitats, and relative abundance tended to increase with increasing distance along the estuary. Designation of effective juvenile habitat for School Prawn may have been affected by high fishing mortality in fished areas, but this requires further investigation. Salinity, depth, turbidity and distance along the estuary were all important indicators of prawn distribution. The implications of these patterns for current and future habitat rehabilitation in temperate Australia are discussed.     

Variation in habitat connectivity generates positive correlations between species and genetic diversity in a metacommunity

An increasing number of studies are simultaneously investigating species diversity (SD) and genetic diversity (GD) in the same systems, looking for ‘species– genetic diversity correlations’ (SGDCs). From negative to positive SGDCs have been reported, but studies have generally not quantified the processes underlying these correlations. They were also mostly conducted at large biogeographical scales or in recently degraded habitats. Such correlations have not been looked for in natural networks of connected habitat fragments (metacommunities), and the underlying processes remain elusive in most systems. We investigated these issues by studying freshwater snails in a pond network in Guadeloupe (Lesser Antilles). We recorded SD and habitat characteristics in 232 ponds and assessed GD in 75 populations of two species. Strongly significant and positive SGDCs were detected in both species. Based on a decomposition of SGDC as a function of variance–covariance of habitat characteristics, we showed that connectivity (opportunity of water flow between a site and the nearest watershed during the rainy season) has the strongest contribution on SGDCs. More connective sites received both more alleles and more species through immigration resulting in both higher GD and higher SD. Other habitat characteristics did not contribute, or contributed negatively, to SGDCs. This is true of the desiccation frequency of ponds during the dry season, presumably because species markedly differ in their ability to tolerate desiccation. Our study shows that variation in environmental characteristics of habitat patches can promote SGDCs at metacommunity scale when the studied species respond homogeneously to these environmental characteristics.     

Forest mammal roadkills as related to habitat connectivity in protected areas

Fragmentation of wildlife habitat by road development is a major threat to biodiversity. Hence, conservation and enhancement of habitat connectivity in roaded landscapes are crucial for effectively maintaining long-term persistence of ecological processes, such as gene flow and migration. Using multivariate statistical techniques combined with graph theoretical methods, we investigated the influence of road-crossing habitat connectivity and road-related features on roadkill abundance of forest mammals in protected areas of South Korea. Because species have different dispersal abilities and thus connectivity would differ between them, we explored three different groups of road-killed mammals, categorized as small, intermediate, and large ones. We found that in all three mammal groups, roadkills are increased on roads that intersect high-connectivity routes. Furthermore, the effect of habitat connectivity on roadkill abundance was scale-dependent. The roadkill abundances of small, intermediate, and large mammals were related with connectivity measured at scales ranging between 100 and 300 m, between 5 and 7 km, and between 10 and 25 km, respectively. Our finding with regard to scale-dependency highlights the importance of maintaining movement and connectivity across roads at multiple scales based on the dispersal potential of different species when planning conservation strategies for forest mammalian roadkill mitigation.     

Causes and consequences of crayfish extinction: Stream connectivity,habitat changes,alien species and ecosystem services

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