Multiple discriminant analysis of macrobenthic infaunal assemblages

Multiple discriminant analysis is applied, in a general benthic survey, to correlate the animal associations with some measurements of physical and chemical variables. Four major macrobenthic assemblages are identified in the study area. In addition, species characterizing the various faunal groups are defined. The delineation of such animal assemblages is mainly due to the relative organic carbon content and the fine silt-clay fraction (positive graphic skewness) of the sediment, which is largely deposited in the sampling area by a river drainage. The application of multiple discriminant analysis to demonstrate such correlative relationships between biotic and abiotic variables in benthic studies is discussed.     

Effects of allylthiourea,salinity, and pH on ammonia/ammonium-oxidizing prokaryotes in mangrove sediment incubated in laboratory microcosms

Anaerobic ammonium-oxidizing (anammox) bacteria, aerobic ammonia-oxidizing archaea (AOA) and bacteria (AOB) are three groups of ammonia/ammonium-oxidizing prokaryotes (AOPs) involved in the biochemical nitrogen cycling. In this study, the effects of allylthiourea (ATU), pH, and salinity on these three groups from mangrove sediment were investigated through microcosm incubation in laboratory. ATU treatments (50, 100, and 500 mg L^?1) obviously affected the community structure of anammox bacteria and AOB, but only slightly for AOA. ATU began to inhibit anammox bacteria growth slightly from day 10, but had an obvious inhibition on AOA growth from the starting of the study. At 100 mg L^?1 of ATU or higher, AOB growth was inhibited, but only lasted for 5 days. The pH treatments showed that acidic condition (pH 5) had a slight effect on the community structure of anammox bacteria and AOA, but an obvious effect on AOB. Acidic condition promoted the growth of all groups of AOPs in different extent, but alkaline condition (pH 9) had a weak effect on AOB community structure and a strong effect on both anammox bacteria and AOA. Alkaline condition obviously inhibited anammox bacteria growth, slightly promoted AOA, and slightly promoted AOB in the first 20 days, but inhibited afterward. Salinity treatment showed that higher salinity (20 and 40?‰) resulted in higher anammox bacteria diversity, and both AOA and AOB might have species specificity to salinity. High salinity promoted the growth of both anammox bacteria and AOB, inhibited AOA between 5 and 10 days, but promoted afterward. The results help to understand the role of these microbial groups in biogeochemical nitrogen cycling and their responses to the changing environments.     

Effects of the burrowing mayfly,Hexagenia, on nitrogen and sulfur fractions in lake sediment microcosms

Effects of the burrowing mayfly, Hexagenia, on nitrogen and sulfur fractions of sediment, and overlying water were determined. Laboratory microcosms were used to reproduce the benthic environment. The activities of Hexagenia increased sediment Eh (1.98 ± 0.486 (22) mV · day ⁻¹), and decreased pH in sediment (−0.007 ± 0.001 (22) day ⁻¹) and overlying water(-0.024 ± 0.004 (10) day⁻¹). In the control, Eh decreased and pH did not change. The presence of Hexagenia also markedly increased ammonia in sediment (5.46 ± 0.14 (22) ppm N · day⁻¹) and overlying water (0.792 ± 0.154 (10) ppm N · day⁻¹), while the control did not change. In addition, the sulfate fraction of sediment (0.177 ± 0.006 (17)% dry mass) and water (50.0 ± 4.9 (5) mg · I⁻¹) in microcosms with Hexagenia was greater than that of the control (0.151 ± 0.005 (16)% dry mass; 14.7 ± 1.71 (3) mg · 1⁻¹) at the termination of the experiment. Hexagenia may also stimulate the mineralization of carbon-bonded sulfur. The general role of Hexagenia in altering sediment chemistry is discussed.     

Nitrate enhancement of nitrification depth in sediment/water microcosms

Manipulation and disposal techniques

Nitrate enhancement of nitrification depth in sediment/water microcosms     

Thermal adaptation of heterotrophic soil respiration in laboratory microcosms

Respiration of heterotrophic microorganisms decomposing soil organic carbon releases carbon dioxide from soils to the atmosphere. In the short term, soil microbial respiration is strongly dependent on temperature. In the long term, the response of heterotrophic soil respiration to temperature is uncertain. However, following established evolutionary trade‐offs, mass‐specific respiration (R_mass) rates of heterotrophic soil microbes should decrease in response to sustained increases in temperature (and vice‐versa). Using a laboratory microcosm approach, we tested the potential for the R_mass of the microbial biomass in six different soils to adapt to three, experimentally imposed, thermal regimes (constant 10, 20 or 30 °C). To determine R_mass rates of the heterotrophic soil microbial biomass across the temperature range of the imposed thermal regimes, we periodically assayed soil subsamples using similar approaches to those used in plant, animal and microbial thermal adaptation studies. As would be expected given trade‐offs between maximum catalytic rates and the stability of the binding structure of enzymes, after 77 days of incubation R_mass rates across the range of assay temperatures were greatest for the 10 °C experimentally incubated soils and lowest for the 30 °C soils, with the 20 °C incubated soils intermediate. The relative magnitude of the difference in R_mass rates between the different incubation temperature treatments was unaffected by assay temperature, suggesting that maximum activities and not Q₁₀ were the characteristics involved in thermal adaptation. The time taken for changes in R_mass to manifest (77 days) suggests they likely resulted from population or species shifts during the experimental incubations; we discuss alternate mechanistic explanations for those results we observed. A future research priority is to evaluate the role that thermal adaptation plays in regulating heterotrophic respiration rates from field soils in response to changing temperature, whether seasonally or through climate change.     

Effects of mixing pine and broadleaved tree/shrub litter on decomposition and N dynamics in laboratory microcosms

This study was carried out to compare the ecological function of exotic pine (Pinus radiata—Pr) and native pine (Pinus tabulaeformis—Pt) in terms of litter decomposition and its related N dynamics and to evaluate if the presence of broad-leaved tree species (Cercidiphyllum japonicum—Cj) or shrub species (Ostryopsis davidiana—Od) litter would promote the decomposition of pine needles and N cycling. Mass remaining, N release of the four single-species litters and mixed-species (Pt + Cj; Pr + Cj; Pt + Od; Pr + Od) litters and soil N dynamics were measured at microcosm scale during an 84-day incubation period. The Pt and Pr litter, with poorer substrate quality, indicated slower decomposition rates than did the Cj and Od litter. Due to their high C/N ratios, the N mass of Pt and Pr litter continuously increased during the early stage of decomposition, which showed that Pt and Pr litter immobilized exogenous N by microbes. No significant differences of soil inorganic, dissolved organic and microbial biomass N were found between the Pt and Pr microcosm at each sampling. The results showed that the exotic Pr performed similar ecological function to the native Pt in terms of litter decomposition and N dynamics during the early stage. The presence of Cj or Od litter increased the decomposition rates of pine needle litter and also dramatically increased soil N availability. So it is feasible for plantation managers to consider the use of Cj as an ameliorative species or to retain Od in pine plantations to promote the decomposition of pine litter and increase nutrient circulation. The results also suggested that different species litters induced different soil dissolved organic nitrogen (DON). As a major soluble N pool in soil, DON developed a different changing tendency over time compared with inorganic N, and should be included into soil N dynamic under the condition of our study.     

Detection, cultivation and maintenance of Gallionella in laboratory microcosms

A simple circulating system was developed whereby growth medium or stream water was circulated through vessels containing putative Gallionella specimens. An iron source was provided, separate from the growth vessel. Removal of the iron source resulted in a rapid depletion of iron II ions indicative of Gallionella activity. Presence and viability of Gallionella were confirmed microscopically and by culture. The system is suitable for corrosion studies under conditions of controlled water chemistry, as well as for studies involving removal of metal ions from waste waters and aquifers.     

Competition between n-alkane-assimilating yeasts and bacteria during colonization of sandy soil microcosms

An n-alkane-assimilating strain of Candida tropicalis was selected in sandy soil inoculated with microorganisms from contaminated sites. Competition experiments with n-alkane utilizers from different strain collections confirmed that yeasts overgrow bacteria in sandy soil. Acidification of the soil is one of the colonization factors useful for the yeasts. It can be counteracted by addition of bentonite, a clay mineral with high ion exchange capacity, but not, however, by kaolin. Strains of different yeast species showed different levels of competitiveness. Strains of Arxula adeninivorans, Candida maltosa, and Yarrowia lipolytica overgrew strains of C. tropicalis, C. shehatae or Pichia stipitis. Two strains of C. maltosa and Y. lipolytica coexisted during several serial transfers under microcosm conditions. Received: 20 October 1999 / Received revision: 26 January 2000 / Accepted: 27 January 2000     

Temporal variation of magnetotactic bacterial communities in two freshwater sediment microcosms

Magnetotactic bacteria (MTB), which can mineralize nanosized magnetite or greigite crystals within cells, play important roles in biogeochemical processes, for example iron and sulfur cycling, and depositional remanent magnetization acquisitions. Despite decades of research, the knowledge of MTB distribution and ecology is still limited. In the present study, we investigated the temporal variation of MTB communities in freshwater sediment microcosms based on 16S rRNA genes and unifrac analyses. Two microcosms (MY8 and MY11) collected from two separate sites in Lake Miyun (Beijing, China) were analyzed. The majority of retrieved sequences belonged to alphaproteobacterial magnetotactic cocci in both microcosms (representing 64.29% of clones from MY8 and 100% of clones from MY11), whereas so-called ' Magnetobacterium bavaricum '-like MTB affiliated within Nitrospira phylum were exclusively found in microcosm MY8. Over a 3-month period, the temporal variation of MTB communities was evident in both microcosms. In addition, the phylogenetic discrepancy of MTB communities between two microcosms is more prominent than that of the same microcosm at different times, implying adaptation of MTB phylogenetic lineages to specific microenvironments. Among the physical–chemical parameters measured, a strong correlation was shown between nitrate and the main genetic variability of MTB communities, indicating that nitrate may influence the occurrence of MTB phylogenetic lineages in natural environments.     

Grazing and nutrient influences of Daphnia and Eudiaptomus on phytoplankton in laboratory microcosms

In two experiments, top-down and bottom-up influences of theherbivorous crustaceans Daphnia pulicaria and Eudiaptomus grac$$$loideson phytoplankton were compared in laboratory microcosms. Ina long-term experiment (63 days), both grazers were able toestablish populations. The Daphnia population exerted strongergrazing pressure, whereas Eudiaptomus fed more selectively.Daphnia retained relatively more phosphorus (P) and thus causedalgal P limitation; with Eudiaptomus as a grazer, both nitrogen(N) and P remained limiting. In a short-term experiment (1 day),N and P release rates and algal-specific grazing rates by bothconsumers were measured. In this experiment, the increase inconcentrations of soluble mineral nutrients (     

Study of nitrogen fixation in microbial communities of oil-contaminated marine sediment microcosms

Aerobic microbial degradation of pollutant oil (petroleum) in aquatic environments is often severely limited by the availability of combined nitrogen. We therefore studied whether the microbial community enriched in marine sediment microcosms with an added oil layer and exposure to light harboured nitrogenase activity. The acetylene reduction (AR) assay indeed indicated active nitrogenase; however, similar activity was observed in oil-free control microcosms. In both microcosms, the AR rate was significantly reduced upon a dark shift, indicating that enriched cyanobacteria were the dominant diazotrophs. Analysis of structural dinitrogenase reductase genes (nifH) amplified from both microcosms indeed revealed NifH sequences related mostly to those of heterocystous cyanobacteria. NifH sequences typically affiliating with those of heterotrophic bacteria were more frequently retrieved from the oil-containing sediment. Expression analyses showed that mainly nifH genes similar to those of heterocystous cyanobacteria were expressed in the light. Upon a dark shift, nifH genes related to those of non-heterocystous cyanobacteria were expressed. Expression of nifH assignable to heterotrophs was apparently not significant. It is concluded that cyanobacteria are the main contributors of fixed nitrogen to oil-contaminated and pristine sediments if nitrogen is a limiting factor and if light is available. Hence, also the oil-degrading heterotrophic community may thus receive a significant part of combined nitrogen from cyanobacteria, even though oil vice versa apparently does not stimulate an additional nitrogen fixation in the enriched community.     

Effects of artificial ultraviolet-B radiation on experimental aquatic microcosms

1. The effects of prolonged ultraviolet-B (UVB) radiation on freshwater communities were studied in indoor microcosms (600 L) with artificial light sources, simulating a clear, shallow, mesotrophic aquatic ecosystem. A range of six intensities (in duplicate) of UVB radiation, ranging from 0 (control) to 9.56 kJ m⁻² day⁻¹ at the water surface, was applied for 8 weeks. The UVB radiation levels, attenuation, shading and scattering were comparable to those in Dutch shallow freshwater systems. Physical, chemical and biological variables were monitored weekly.
2. The UVB treatment did not affect the abundance, species composition or biovolume of the phytoplankton or zooplankton communities, nor did it affect the periphyton or the macroinvertebrate community. A few species showed a significant response on some of the sampling dates, but there was no negative UVB effect at the community level. Overall, the ecosystems in the microcosms were not affected by the UVB treatment.
3. In a bio-assay, a laboratory clone of Daphnia pulex , not subjected to UVB radiation, was fed with seston from the microcosms. Daphnia pulex feeding on seston from the control microcosms grew faster, had better survival and better reproduction than D. pulex feeding on seston from the UVB treated microcosms. The phytoplankton–zooplankton interaction may have been influenced by the UVB treatment.
4. The dissolved oxygen content (DOC) concentrations in the microcosms were around 5 mg L^−1. The DOC levels in Dutch systems rarely fall below 10 mg L^−1. This might provide sufficient protection against the detrimental effects of increased UVB radiation.     

The influence of white seabream (Diplodus sargus) production on macrobenthic colonization patterns

The present work evaluates the influence of fish production on macrobenthic colonization over large areas (approximately 700 m²), where the colonizing populations are not nearby the disturbed area. Sampling was undertaken within newly created aquaculture earthen ponds under two contrasting conditions: white seabream (Diplodus sargus) production and no production (control). Macrobenthic and geochemical samples were collected 7, 23, 54, 93 and 180 days after filling the earthen ponds with seawater pumped from a water reservoir for the first time. The water reservoir was also sampled, and is used as a reference for the colonizing populations. Macrobenthic colonization rate in the ponds was low, probably due to the isolation of the disturbed habitat, to the large size of the defaunated area, and possibly to geochemical constraints. Initial colonization was by insect larvae (mainly chironomids), the bivalves Cerastoderma spp., the polychaetes Pseudopolydora paucibranchiata and Hydrodoides elegans, and nemerteneans. The number of species was similar in control and production ponds, even though under production higher total abundance values were observed. Although well represented in the water reservoir, the amphipod Microdeutopus gryllotalpa was only observed within the new ponds after 6 months. Preliminary results suggest that macrobenthic colonization patterns were influenced by fish production, as assemblages were significantly different among ponds. Higher food availability due to fish production may explain the results obtained, but ecological reasons, such as predation, may also contribute for shaping the macrobenthic communities.     

Resuspension studies in cylindrical microcosms: Effects of stirring velocity on the dynamics of redox sensitive elements in a coastal sediment

Effects of resuspension on the release of dissolved, redox sensitive elements (Fe, Mn) was studied in cylindrical microcosms. Effects from changing water stirring velocity in sediment pools were evaluated through measurements of pore water profiles of dissolved Mn, Fe and redox potential. Mn was a good natural marker to follow such effects. At current velocities below the threshold velocity for resuspension (37 cm s-1), Mn release rates to overlying water were 100 times higher compared to steady-state values. Pulse increases in Mn concentration were the result of convective currents inside flow chambers. These results were strongly supported by measurements of Eh profiles in the sediment pore water. Furthermore, impacts from increasing stirring velocity were found down to 1.9 cm depth below the resuspended layer of sediment.     

Effects of flooding on leaf litter decomposition in microcosms

Summary The effects of hydroperiod on decomposition rates of senescent Acer rubrum leaves were tested in microcosms in a controlled laboratory environment. Microcosm treatments included continuously flooded, continuously unflooded, and fluctuating hydroperiods. All flooding treatments promoted decomposition but variations in hydroperiod had no significant effects. A leaching experiment indicated the higher decay rates under flooded conditions were primarily due to high leaching losses from soaking. Unlike nutrient dynamics in the field, where net accumulation occurs, nitrogen and phosphorus in the litter in the microcosms exhibited net losses. The major external inputs which provide a source of nitrogen and phosphorus for immobilization in the field were lacking in the microcosms. Calcium, magnesium, and potassium exhibited net losses except for calcium in the unflooded microcosms. The microcosm results demonstrated the importance of external inputs to litter nutrient relations.     

螺类牧食与沉积物类型对苦草生长的影响

在室外实验条件下,研究了螺类牧食与沉积物类型对苦草生长的影响。结果表明:椭圆萝卜螺的牧食对苦草生长有显著影响,牧食损害使苦草的相对生长率明显降低、块茎数量及重量下降。沉积物类型对苦草生长也有明显影响,苦草的相对生长率在营养盐相对丰富的湖泥处理组中要远高于岸泥处理组,而根须数与块茎重量在湖泥处理组中显著低于岸泥处理组。螺类牧食与沉积物类型对苦草的各项生长指标无明显交互作用。     

Effects of freeze-thaw stress on bacterial populations in soil microcosms

To test the effect of freezing on soil biota, isolated from the shortgrass prairie of northeastern Colorado, a series of experiments were performed using gnotobiotic soil microcosms.Pseudomonas paucimobilis was used to examine the effects of freezing on bacteria of different growth stages. Secondly, the effect of multiple freeze-thaw cycles was tested on an assemblage of bacterial species. Lastly, the effect of freezing on predator-prey interactions was studied usingP. paucimobilis and an amoebal predator,Acanthamoeba polyphaga. A temperature of ?9°C was not detrimental toP. paucimobilis at any growth stage. A single severe freeze-thaw cycle (?27°C to 23°C) resulted in 40–60% mortality ofP. paucimobilis and the mixed bacteria, although additional freezing events did not reduce the populations further. Multiple freeze-thaw cycles (?9°C to 23°C) gave 40–60% mortality ofP. paucimobilis and the mixed bacteria. Predator-prey population cycles were possibly desynchronized by freeze-thaw events.     

Survival and function of a genetically engineered Pseudomonad in aquatic sediment microcosms.

Pseudomonas sp. strain B13 FR1(pFRC20P) is a genetically engineered microorganism (GEM) which is able to degrade chloro- and methylaromatics through a constructed ortho cleavage pathway. The fate of the GEM and its ability to degrade substituted aromatic compounds in two different aquatic sediments was investigated by using a microcosm system which consisted of intact layered sediment cores with an overlying water column. The GEM survived in Lake Plussee and in Rhine river sediments at densities of approximately 10(5) bacteria per g (dry weight) (1 to 5% of the total CFU) throughout a 4-week period of investigation. According to several criteria, the microcosm system was stable and healthy throughout the experiment and the addition of the GEM did not affect the total number of extractable CFU (I. Wagner-D?bler, R. Pipke, K. N. Timmis, and D. F. Dwyer, Appl. Environ. Microbiol. 58:1249-1258, 1992). When compared with uninoculated controls, the presence of the GEM enhanced the rate of degradation of a mixture of 3-chlorobenzoate and 4-methylbenzoate (25 microns each) which had been added to the water column of the sediment cores.     

Survival and function of a genetically engineered Pseudomonad in aquatic sediment microcosms.

Pseudomonas sp. strain B13 FR1(pFRC20P) is a genetically engineered microorganism (GEM) which is able to degrade chloro- and methylaromatics through a constructed ortho cleavage pathway. The fate of the GEM and its ability to degrade substituted aromatic compounds in two different aquatic sediments was investigated by using a microcosm system which consisted of intact layered sediment cores with an overlying water column. The GEM survived in Lake Plussee and in Rhine river sediments at densities of approximately 10(5) bacteria per g (dry weight) (1 to 5% of the total CFU) throughout a 4-week period of investigation. According to several criteria, the microcosm system was stable and healthy throughout the experiment and the addition of the GEM did not affect the total number of extractable CFU (I. Wagner-Döbler, R. Pipke, K. N. Timmis, and D. F. Dwyer, Appl. Environ. Microbiol. 58:1249-1258, 1992). When compared with uninoculated controls, the presence of the GEM enhanced the rate of degradation of a mixture of 3-chlorobenzoate and 4-methylbenzoate (25 microns each) which had been added to the water column of the sediment cores.     

Mineralization budgets in sediment microcosms: Effect of the infauna and anoxic conditions

Abstract A number of sediment incubations were set up to reproduce some of the conditions used by Kristensen and Blackburn [1] and to make a comparison with their results. There were three types of microcosm: aerobic (OX), anaerobic (AN) and aerobic with Nephtys (NOX). In addition to other measurements, dissolved organic nitrogen (DON) pools and fluxes, were measured. The sediment in this experiment contained more particulate organic matter (POM). Nephtys (NOX) had the same effect as Nereis in increasing the rate of mineralization of POC and PON, compared with the OX-cores (2.1 and 2.6 times, respectively). Again, the AN-cores had a higher mineralization rate (loss of POM) than that of the OX-cores, but in addition, mineralization in NOX-cores was not significantly different from AN-cores. It was thus confirmed that anoxic mineralization could be as high, or higher, than the oxic process. Both the temporal patterns of O₂-and and CO₂-fluxes and their magnitudes were very similar to those reported earlier. This contrasts with the higher loss of POM in the present experiment. However, the loss of C in DOC (associated with the measured DON) can account for the extra POM loss. The pore-water profiles of σCO₂ and NH₄⁺ were similar to those in the earlier report, and the fluxes of σCO₂, O₂, NH₄⁺ and NO₃⁻ followed the same temporal pattern.