High-throughput β-thalassemia carrier screening by allele-specific Q-primer real-time polymerase chain reaction

Based on a novel Q-primer real-time polymerase chain reaction (PCR) system, we designed allele-specific Q-primers for the detection of three β-thalassemia mutations [Cd41/42(-TCTT), IVSI nt5 (G>C), and IVSII nt654 (C>T)] that have a high carrier frequency in Southeast Asia. With clear distinction between heterozygote and wild-type, ΔC_t (threshold cycle) values were defined. The results of evaluating 139 blinded samples by our system match perfectly with those obtained by the conventional reverse dot blot (RDB) method. With a 384-well plate that included replicates in the same analysis, our throughput reached 190 reactions per run with a turnaround time as short as 130 min, and the cost of consumables was as low as $1 (US) for each test.     

CRITICAL ILLUMINATION AND FLICKER FREQUENCY,AS A FUNCTION OF FLASH DURATION: FOR THE SUNFISH

From the relations between critical illumination in a flash (I_m) and the flash frequency (F) for response of the sunfish to visual flicker when the proportion of light time to dark time (t_L/t_D) in a flicker cycle is varied at one temperature (21.5°) the following results are obtained: At values of t_L/t_D between 1/9 and 9/1 the F - log I_m curves are progressively shifted toward higher intensities and lower F_max.. F_max. is a declining rectilinear function of the percentage of the flash cycle time occupied by light. The rod and the cone portions of the flicker curve are not shifted to the same extent. The cone portion and the rod region of the curve are each well described by a probability integral. In terms of F as 100 F/F_max. the standard deviation of the underlying frequency distribution of elemental contributions, summed to produce the effect proportional to F, is independent of t_L/t_D. The magnitude of log I_m at the inflection point (r''), however, increases rectilinearly with the percentage light time in the cycle. The proportionality between I_m and σ_II1 is independent of t_L/t_D. These effects are interpreted as consequences of the fact that the number of elements of excitation available for discrimination of flicker is increased by increasing the dark interval in a flash cycle. Decreasing the dark interval has therefore the same kind of effect as reducing the visual area, and not that produced by decreasing the temperature.     

Water transport in the midrib tissue of maize leaves : direct measurement of the propagation of changes in cell turgor across a plant tissue

Water movement across plant tissues occurs along two paths: from cell-to-cell and in the apoplasm. We examined the contribution of these two paths to the kinetics of water transport across the parenchymatous midrib tissue of the maize (Zea mays L.) leaf. Water relations parameters (hydraulic conductivity, Lp; cell elastic coefficient, ε; half-time of water exchange for individual cells, T_½) of individual parenchyma cells determined with the pressure probe varied in different regions of the midrib. In the adaxial region, Lp = (0.3 ± 0.3)·10⁻⁵ centimeters per second per bar, ε = 103 ± 72 bar, and T_½ = 7.9 ± 4.8 seconds (n = seven cells); whereas, in the abaxial region, Lp = (2.5 ± 0.9)·10⁻⁵ centimeters per second per bar, ε = 41 ± 9 bar, and T_½ = 1.3 ± 0.5 seconds (n = 7). This zonal variation in Lp, ε, and T_½ indicates that tissue inhomogeneities exist for these parameters and could have an effect on the kinetics of water transport across the tissue.

The diffusivity of the tissue to water (D_t) obtained from the sorption kinetics of rehydrating tissue was D_t = (1.1 ± 0.4)·10⁻⁶ square centimeters per second (n = 6). The diffusivity of the cell-to-cell path (D_c) calculated from pressure probe data ranged from D_c = 0.4·10⁻⁶ square centimeters per second in the adaxial region to D_c = 6.1·10⁻⁶ square centimeters per second in the abaxial region of the tissue. D_t D_c suggests substantial cell-to-cell transport of water occurred during rehydration. However, the tissue diffusivity calculated from the kinetics of pressure-propagation across the tissue (D_t′) was D_t′ = (33.1 ± 8.0)·10⁻⁶ square centimeters per second (n = 8) and more than 1 order of magnitude larger than D_t. Also, the hydraulic conductance of the midrib tissue (Lp_m per square centimeter of surface) estimated from pressure-induced flows across several parenchyma cell layers was Lp_m = (8.9 ± 5.6)·10⁻⁵ centimeters per second per bar (n = 5) and much larger than Lp.

These results indicate that the preferential path for water transport across the midrib tissue depends on the nature of the driving forces present within the tissue. Under osmotic conditions, the cell-to-cell path dominates, whereas under hydrostatic conditions water moves primarily in the apoplasm.

     

Binding properties of the 5-methyltetrahydrofolate/methotrexate transport system in L1210 cells

A binding component with a high affinity for 5-methyltetrahydrofolate (K_D = 0.11μm) is present on the external surface of L1210 cells. The amount of binder (1 pmol/mg protein) corresponds to 8 × 10⁴ sites per cell. The participation of this component in the high-affinity 5-methyltetrahydrofolate/methotrexate transport system is supported by similarities in the K_D values for 5-methyltetrahydrofolate and methotrexate binding and the K_t values of these compounds for transport. Relative affinities for other folate substrates (aminopterin, 5-formyltetrahydrofolate, and folate) and various competitive inhibitors (thiamine pyrophosphate, ADP, AMP, arsenate, and phosphate) are also similar for both the binding component and the transport system. The measured binding activity does not represent low-temperature transport of substrate into cells, since it is readily saturable with time and is eliminated by either washing the cells with buffer or by the addition of excess unlabeled substrate.     

A [P]NAD-based method to identify and quantitate long residence time enoyl-acyl carrier protein reductase inhibitors

The classical methods for quantifying drug–target residence time (t_R) use loss or regain of enzyme activity in progress curve kinetic assays. However, such methods become imprecise at very long residence times, mitigating the use of alternative strategies. Using the NAD(P)H-dependent FabI enoyl-acyl carrier protein (enoyl-ACP) reductase as a model system, we developed a Penefsky column-based method for direct measurement of t_R, where the off-rate of the drug was determined with radiolabeled [adenylate-³²P]NAD(P⁺) cofactor. In total, 23 FabI inhibitors were analyzed, and a mathematical model was used to estimate limits to the t_R values of each inhibitor based on percentage drug–target complex recovery following gel filtration. In general, this method showed good agreement with the classical steady-state kinetic methods for compounds with t_R values of 10 to 100 min. In addition, we were able to identify seven long t_R inhibitors (100–1500 min) and to accurately determine their t_R values. The method was then used to measure t_R as a function of temperature, an analysis not previously possible using the standard kinetic approach due to decreased NAD(P)H stability at elevated temperatures. In general, a 4-fold difference in t_R was observed when the temperature was increased from 25 to 37 °C.     

Appendix: A model of plaque formation

Equations describing plaque formation in soft agar have been based on certain simplifying assumptions, for which data are presented. The derived equations permit one to calculate (i) average plaque size as a function of the initial density of indicator cells (D_o), (ii) the number of cells lysed per plaque as a function of D_o, and (iii) the cumulative number of cells lysed at various stages of plaque development. The calculated values agree well with those determined experimentally.     

A function for describing nitrogen uptake,dry matter production and rooting by wheat crops

The quantities,Y, of nitrogen taken up, and dry matter produced, at various times during the growth of six winter wheat crops at Rothamsted were shown to be related to thermal time,x, based on soil temperature, by a simple equation $$Y = (A^{ - 1/n} + \exp ( - kx))^{ - n} $$ whereA is the ultimate maximum ofY, n a shape factor andk a rate constant that is related toA andn throughx′, the inflexion point of the function. The value ofn was 1.5 for both N uptake and dry matter. The value ofA for N uptake,A _N , was well described by a multiple regression on sowing data,t _s , expressed as the number of days after August 31st, and rainfall,R _Apr , in the April before harvest, but no such regression could be found for the value ofA for dry matter,A _D . The rate constants,k _N andk _D , for N-uptake and dry-matter production respectively, could be related to the date of sowing and the weather through the corresponding inflexion points,x′ _N andx′ _D . Highly significant regressions were found, forx′ _N on the time,t _sf , between sowing and the return of the soil to field capacity and forx′ _D on the reciprocal oft _s . The function was used to generate N uptake curves from values ofA _N andk _N (obtained fromx′ _N ) given by inserting the appropriate values ofR _Apr ,t _s andt _sf in the regressions. These fitted measured N uptakes satisfactorily for the six crops used to obtain the regressions, and four grown subsequently, at Rothamsted, and also for six crops at Woburn. Values ofA _D had to be set arbitrarily because no regression had been found to predict them, but using these arbitrary values in the function gave dry matter curves that fitted the measurements satisfactorily for all ten Rothamsted crops and two of the Woburn crops. Tests for seasonal and site effects showed thatA _N was influenced more by differences between the two sites than by seasonal differences other than those inR _Apr , whereasA _D was strongly influenced by these seasonal differencess and very little by those between the sites.     

Release of Free DNA by Membrane-Impaired Bacterial Aerosols Due to Aerosolization and Air Sampling

We report here that stress experienced by bacteria due to aerosolization and air sampling can result in severe membrane impairment, leading to the release of DNA as free molecules. Escherichia coli and Bacillus atrophaeus bacteria were aerosolized and then either collected directly into liquid or collected using other collection media and then transferred into liquid. The amount of DNA released was quantified as the cell membrane damage index (I_D), i.e., the number of 16S rRNA gene copies in the supernatant liquid relative to the total number in the bioaerosol sample. During aerosolization by a Collison nebulizer, the I_D of E. coli and B. atrophaeus in the nebulizer suspension gradually increased during 60 min of continuous aerosolization. We found that the I_D of bacteria during aerosolization was statistically significantly affected by the material of the Collison jar (glass > polycarbonate; P < 0.001) and by the bacterial species (E. coli > B. atrophaeus; P < 0.001). When E. coli was collected for 5 min by filtration, impaction, and impingement, its I_D values were within the following ranges: 0.051 to 0.085, 0.16 to 0.37, and 0.068 to 0.23, respectively; when it was collected by electrostatic precipitation, the I_D values (0.011 to 0.034) were significantly lower (P < 0.05) than those with other sampling methods. Air samples collected inside an equine facility for 2 h by filtration and impingement exhibited I_D values in the range of 0.30 to 0.54. The data indicate that the amount of cell damage during bioaerosol sampling and the resulting release of DNA can be substantial and that this should be taken into account when analyzing bioaerosol samples.     

Response Characteristics of Soil Fractal Features to Different Land Uses in Typical Purple Soil Watershed

As a fundamental characteristic of soil physical properties, the soil Particle Size Distribution (PSD) is important in the research on soil moisture migration, solution transformation, and soil erosion. In this research, the PSD characteristics with distinct methods in different land uses are analyzed. The results show that the upper bound of the volume domain of the clay domain ranges from 5.743μm to 5.749μm for all land-use types. For the silt domain of purple soil, the value ranges among 286.852~286.966 μm. For all purple soil land-use types, the order of the volume domain fractal dimensions is D_clay<D_silt<D_sand. However, the values of D_silt and D_sand in the Pinus massoniana Lamb, Robinia pseudoacacia L and Ipomoea batatas are all higher than the corresponding values in the Citrus reticulate Blanco and Setaria viridis. Moreover, in all the land-use types, all of the parameters in volume domain fractal dimension (D_vi) are higher than the corresponding parameter values from the United States Department of Agriculture (D_vi(U)). The correlation study between the volume domain fractal dimension and the soil properties shows that the intensity of correlation to the soil texture and soil organic matter has the order as: D_silt>D_silt(U)>D_sand (U)>D_sand and D_silt>D_silt(U)>D_sand>D_sand(U), respectively. As it is compared with all D_vi, the D_silt has the most significant correlativity to the soil texture and organic matter in different land uses of the typical purple soil watersheds. Therefore, D_silt will be a potential indictor for evaluating the proportion of fine particles in the PSD, as well as a key measurement in soil quality and productivity studies.     

Determination of Hepatocellular Carcinoma and Characterization of Hepatic Focal Lesions with Adaptive Multi-Exponential Intravoxel Incoherent Motion Model

PURPOSE: To distinguish hepatocellular carcinoma (HCC) from other types of hepatic lesions with the adaptive multi-exponential IVIM model. METHODS: 94 hepatic focal lesions, including 38 HCC, 16 metastasis, 12 focal nodular hyperplasia, 13 cholangiocarcinoma, and 15 hemangioma, were examined in this study. Diffusion-weighted images were acquired with 13 b values (b?=?0, 3, …, 500 s/mm²) to measure the adaptive multi-exponential IVIM parameters, namely, pure diffusion coefficient (D), diffusion fraction (f_d), pseudo-diffusion coefficient (D_i*) and perfusion-related diffusion fraction (f_i) of the ith perfusion component. Comparison of the parameters of and their diagnostic performance was determined using Mann-Whitney U test, independent-sample t test, one-way analysis of variance, Z test and receiver-operating characteristic analysis. RESULTS: D, D₁* and D₂* presented significantly difference between HCCs and other hepatic lesions, whereas f_d, f₁ and f₂ did not show statistical differences. In the differential diagnosis of HCCs from other hepatic lesions, D₂* (AUC, 0.927) provided best diagnostic performance among all parameters. Additionally, the number of exponential terms in the model was also an important indicator for distinguishing HCCs from other hepatic lesions. In the benign and malignant analysis, D gave the greatest AUC values, 0.895 or 0.853, for differentiation between malignant and benign lesions with three or two exponential terms. Most parameters were not significantly different between hypovascular and hypervascular lesions. For multiple comparisons, significant differences of D, D₁* or D₂* were found between certain lesion types. CONCLUSION: The adaptive multi-exponential IVIM model was useful and reliable to distinguish HCC from other hepatic lesions.     

Recovery Patterns of Spores of Putrefactive Anaerobe 3679 in Various Subculture Media after Heat Treatment

A comparative study was made of the heat resistance of spores of putrefactive anaerobe 3679 grown in two different sporulation media and of the recovery pattern of these spores in several subculturing media after treatment with moist and dry heat. The heat resistance of the spores was characterized in the form of D and z values. The D values were determined by the modified Schmidt method. The z values were established by the graphic method. The results revealed significant differences in D and z values, depending on the type of heat and sporulation and subculture media. Spores grown in beef heart infusion showed higher heat resistance than those grown in Trypticase. Among the seven subculture media used, the largest number of spores was recovered in beef infusion. The magnitude of the D values at 121.1 C obtained with spores heated in moist heat decreased, depending on the subculture medium used, in the following order: beef infusion, pea infusion, yeast extract, liver infusion, Eugonbroth, Trypticase, synthetic medium. With spores subjected to dry heat, D values at 148.9 C decreased with the subculture medium in the following order: beef infusion, yeast extract, pea infusion and liver infusion, Trypticase, Eugonbroth, synthetic medium. The z values obtained with spores subjected to dry heat were approximately double those obtained with moist heat. Their relative magnitude varied slightly, depending on the type of subculture medium used. However, the relative magnitudes of the D values and z values with reference to the subculture media used were different with moist heat from those obtained with dry heat. Two theories are discussed as possible explanations for the logarithmic order of death of bacterial spores. The results obtained in these experiments, together with the findings of other workers, are most compatible with the theory that heat treatment of spores results in an increased rate of random injury to the genetic material of the spores.     

Plasticity of the thermal requirements of exotherms and adaptation to environmental conditions

In exothermal organisms, temperature is an important determinant of the rate of ecophysiological processes, which monotonically increase between the minimum (t_{d min}) and maximum (t_{d max}) temperatures typical for each species. In insects, t_{d min} and t_{d max} are correlated and there is a approximately 20°C interval (thermal window W_T = t_{d max} − t_{d min}) between them over which insects can develop. We assumed that other exotherms have similar thermal windows because the thermal kinetics of their physiological processes are similar. In this study, we determined the thermal requirements for germination in plants. Seeds of 125 species of Central European wild herbaceous and crop plants were germinated at nine constant temperatures between 5 and 37°C, and the time to germination of 50% of the seeds D and rate of germination R (=1/D) were determined for each temperature and the Lactin model used to determine t_{d min}, t_{d max}, and W_T. The average width of the thermal windows for seeds was significantly wider (mean 24°C, 95% CI 22.7–24.2°C), varied more (between 14.5 and 37.5°C) and development occurred at lower temperatures than recorded for insects. The limiting temperatures for germination, t_{d min} and t_{d max}, were not coupled, so the width of the thermal window increased with both a decrease in t_{d min} and/or increase in t_{d max}. Variation in W_T was not associated with taxonomic affiliation, adult longevity, or domestication of the different species, but tends to vary with seed size. Plants are poor at regulating their temperature and cannot move to a more suitable location and as a consequence have to cope with wider ranges in temperatures than insects and possibly do this by having wider thermal windows. Synthesis: The study indicated specificity of W_T in different exotherm taxa and/or their development stages.     

A simplified method for detecting pathogenic Yersinia enterocolitica in slaughtered pig tonsils

The aim of this study was to collect preliminary data on the carriage of pathogenic Yersinia enterocolitica in slaughtered pigs in France and to test a simplified method for detecting these strains from tonsils. From January to March 2009, 900 tonsil swabs were taken from pigs at one slaughterhouse in Brittany, France. The swabs were vortexed in 10 ml PSB broth, then 1 ml was added to 9 ml ITC broth. The media were incubated for 48 h at 25 °C. The PSB enrichment broth was streaked on CIN plates and the ITC enrichment broth on SSDC plates. In addition to the ISO 10273 method, we also streaked ITC enrichment broth on CIN plates. The plates were incubated for 24 h at 30 °C, and we then streaked a maximum of four typical colonies per plate onto a plate containing chromogenic medium (YeCM), for the isolation of pathogenic Y. enterocolitica isolates. In parallel, biochemical assays were carried out to confirm the identification of the isolates as Yersinia and to determine biotype.After passage on a YeCM plate and biochemical tests, 380 strains were confirmed to be pathogenic Y. enterocolitica. Finally, with the ISO 10273 method, 9.1% (CI_95% [5.8-12.4]) of tonsil swabs and 60% (CI_95% [45.4-74.6]) of the batches were positive. With the ITC-CIN method, 14.0% (CI_95% [10.7-17.3]) of the tonsil swabs and 68.9% (CI_95% [54.3-83.5]) of the batches were positive. Identification as pathogenic Y. enterocolitica was confirmed for 97.0% of the typical colonies obtained on the chromogenic medium, YeCM. The most prevalent biotype was biotype 4 (80.5% of the isolates), followed by biotype 3.This study demonstrates that the ITC-CIN method, followed by streaking on YeCM, may be an effective approach to the isolation of pathogenic Y. enterocolitica from tonsil swabs and the recovery of positive samples. This method is less time-consuming than the ISO 10273 method and reduces the number of biochemical tests required for the confirmation of Yersinia identification, through the use of YeCM.     

Novel Tellurite-Amended Media and Specific Chromosomal and Ti Plasmid Probes for Direct Analysis of Soil Populations of Agrobacterium Biovars 1 and 2

Ecology and biodiversity studies of Agrobacterium spp. require tools such as selective media and DNA probes. Tellurite was tested as a selective agent and a supplement of previously described media for agrobacteria. The known biodiversity within the genus was taken into account when the selectivity of K₂TeO₃ was analyzed and its potential for isolating Agrobacterium spp. directly from soil was evaluated. A K₂TeO₃ concentration of 60 ppm was found to favor the growth of agrobacteria and restrict the development of other bacteria. Morphotypic analyses were used to define agrobacterial colony types, which were readily distinguished from other colonies. The typical agrobacterial morphotype allowed direct determination of the densities of agrobacterial populations from various environments on K₂TeO₃-amended medium. The bona fide agrobacterium colonies growing on media amended with K₂TeO₃ were confirmed to be Agrobacterium colonies by using 16S ribosomal DNA (rDNA) probes. Specific 16S rDNA probes were designed for Agrobacterium biovar 1 and related species (Agrobacterium rubi and Agrobacterium fici) and for Agrobacterium biovar 2. Specific pathogenic probes from different Ti plasmid regions were used to determine the pathogenic status of agrobacterial colonies. Various morphotype colonies from bulk soil suspensions were characterized by colony blot hybridization with 16S rDNA and pathogenic probes. All the Agrobacterium-like colonies obtained from soil suspensions on amended media were found to be bona fide agrobacteria. Direct colony counting of agrobacterial populations could be done. We found 10³ to 10⁴ agrobacteria · g of dry soil⁻¹ in a silt loam bulk soil cultivated with maize. All of the strains isolated were nonpathogenic bona fide Agrobacterium biovar 1 strains.     

Comparison of Two Optical-Density-Based Methods and a Plate Count Method for Estimation of Growth Parameters of Bacillus cereus

Quantitative microbiological models predicting proliferation of microorganisms relevant for food safety and/or food stability are useful tools to limit the need for generation of biological data through challenge testing and shelf-life testing. The use of these models requires quick and reliable methods for the generation of growth data and estimation of growth parameters. Growth parameter estimation can be achieved using methods based on plate counting and methods based on measuring the optical density. This research compares the plate count method with two optical density methods, namely, the 2-fold dilution (2FD) method and the relative rate to detection (RRD) method. For model organism Bacillus cereus F4810/72, the plate count method and both optical density methods gave comparable estimates for key growth parameters. Values for the maximum specific growth rate (μ_max) derived by the 2FD method and by the RRD method were of the same order of magnitude, but some marked differences between the two approaches were apparent. Whereas the 2FD method allowed the derivation of values for lag time (λ) from the data, this was not possible with the RRD method. However, the RRD method gave many more data points per experiment and also gave more data points close to the growth boundary. This research shows that all three proposed methods can be used for parameter estimation but that the choice of method depends on the objectives of the research.Food products are required to be safe and sufficiently stable within their given shelf-lives. For this reason, generally some kind of preservation is applied. An often-used preservation method is mild heat treatment, such as pasteurization, which inactivates vegetative microbial pathogens and spoilage microorganisms. Bacillus cereus is a Gram-positive, facultative anaerobic, spore-forming rod (17) that can be found in, for example, soil, food, and the human gastrointestinal tract (23). Viable spores present in a food product may germinate, and the vegetative cells may grow if conditions are favorable. In order to delay or prevent this, one or more hurdles for germination and outgrowth need to be present in the food or food environment. Examples of such hurdles are the acidification of food and addition of salt (12). When a combination of hurdles is used, generally the intensity of the hurdles may be lower to show a preservative effect comparable to the level of those hurdles when they are used individually (24).In this investigation, the use of acidification as a hurdle to prevent growth of B. cereus was studied. The amount of acid to be added to the food product is of importance for both safety reasons and organoleptic properties. B. cereus will not be able to grow at low pH values (pH 5 to 6, depending on the acidulant) (1), but, on the other hand, the food product should not be too acid, given consumer preferences. Research showed that children do not like orange juice with concentrations of citric acid above 0.02 M; for adults this value is 0.04 M (25). The lowest pH value allowing growth of B. cereus can be investigated by experiments culturing the microorganism in a suitable growth medium or food product with different pH values and using the viable plate count method for enumeration (33). Using such an approach to generate biological data for safety or shelf-life evaluations is considered both slow and human resource-intensive since experiments have to be repeated for every new condition. Quantitative microbiological modeling can speed up experimentation and reduce the resources required. Should modeling make it possible to predict the behavior of B. cereus over a wide range and a variety of conditions, then it would help to limit the need for experimentation to the point where just validation of predictions is needed.For successful use of modeling, the maximum specific growth rate (μ_max) and, preferably, also the lag time (λ) have to be known. These parameters can be determined using different techniques. Plate counting can be used to generate the data points μ_max and λ by fitting of the growth curve (15, 33). Often, automated optical density (OD) measurements are used to determine parameters for growth as they allow quicker data generation with less need for human resources (22). It is not possible, however, to directly translate OD values to μ_max values due to the high detection limit of OD readers of ∼10⁷ viable cells. When cells reach their maximum cell density, they proliferate at a progressively slower rate. Consequently, values for μ_max would be consistently underestimated by using OD values. For this reason, OD measurements are often used in combination with time-to-detection (TTD) measurements (5). Values for μ_max can be derived from OD measurements and TTD measurements by the 2-fold dilution (2FD) method (5, 28, 36). The 2FD method uses TTD and inoculum size variations to obtain values for both μ_max and λ. The relative rate to detection (RRD) method also uses OD measurements and TTD measurements to obtain parameters for growth. This method uses the ratio between TTD at the tested and the optimal conditions and can compute μ_max but not λ (20, 21, 37). Notably, plate count data allow both μ_max and λ to be derived, and this method is required as an addition to the RRD method.Although both the 2FD method and the RRD method make use of OD measurements, it is not known whether the two techniques result in comparable estimates of growth parameters and whether these values match values obtained with plate counts. Growth parameters determined by plate count and the 2FD method were previously compared in several studies (5, 27). The present study set out to compare the three different methods for the assessment of parameters for growth on the basis of the following, mainly measureable, criteria: the number of data points obtained per experiment, the measuring intensity, the time consumption per experiment, the reproducibility of the method as determined by comparing the standard deviations of the average μ_max at pH 7, the number of parameters obtained, and the number of criteria necessary for data analysis. B. cereus F4810/72 was used as the model organism. It was cultured at different pH values, a common hurdle in food products, to obtain a variety of growth rates.     

Effect of temperature on the embryonic development of the plaice, Pleuronectes Platessa L. (teleostei)

In normalyears, eggs and prolarvae of the plaice (Pleuronectes platessa L.) in the southern North Sea develop within the temperature range 6.0–8.5 °C, although the water may at times be some degrees colder or warmer than this. The effect of temperature, t °C, on the embryonic development time, D days, has been investigated within the tolerated range 2.8–10.5 °C. Various models to express the observed curvilinear relationship between t and D have been considered, that giving the closest fit to the data being (t−t₀)(D−D₀) = k or $\text{D =}\text{k}\text{(t−t}{}_0\text{)+D}{}_0$. A method is given for the calculation of constants k, D₀, and t₀. The relationship may also be expressed by the equation D = a(t−t₀)^b where a and b are constants, but t₀ must in this case be found by iteration. At investigated temperatures in the range 4.1–10.5 °C the smallest eggs in a batch from a single source hatched first. Within the tolerated range, hatching prolarvae were substantially smaller at 10.5 °C than at the other temperatures. During the period of prolarval yolk utilization, growth is slower at the high temperatures, so that median temperatures of 6.5–8.0 °C are most efficient in terms of the relationship between growth in length and yolk utilization. Toward the end of the yolk-sac phase, the rate of yolk utilization declines unless a suitable external food source (e.g., Artemia nauplii) is provided.     

A study on multidimensional time series model of individual age’s measurement in Castanopsis kawakamii population

Studies on disclosing characteristics and endangered mechanisms of Castanopsis kawakamii population ecology have already become an urgent task of protecting C. kawakamii population. The establishment of the standard life table is one of an important work study on C. kawakamii population ecology, and determining individual ages of the plant is necessary for studying age structures and population dynamics of C. kawakamii. There are three main methods of determining individual age of forest population: (1) by annual ring of tree, (2) by individual growth phase, and (3) by DBH and height of tree. However, the three methods have their shortcomings, such as low precision, worse serviceability, high difficulty for operation and so on. In this paper, a new method for determining plant individual ages more accurately is presented on the basis of the method aboU_t “annual ring–time series”. Based on the stem analysis, the multidimensional time series model of diameter growth at breast height in C. kawakamii population was established by U_tilizing the analY_tical method of multidimensional time series: Y_t = 1.325034Y_t-1 ? 0.4711007Y_t-2 ? 284.5648U_t + 569.4783U_t?1 ? 284.8745U_t?2, where Y_t, Y_t-1, Y_t-2 represent diameter growth in C. kawakamii population at t, t ? 10 and t ? 20 years respectively, and U_t, U_t?1, U_t?2 represent individual age in C. kawakamii population at t, t ? 10 and t ? 20 years respectively, the model coefficient correlation is 0.9994. Based on this model CAR(2), the total increment of individual DBH in C. kawakamii population are simulated and regressively verified at different ages. The mean simulating precision of this model was 98.84%, the maximum relative error was 2.56%, bU_t the next was 2.47% and the minimum relative error was 0.07%, showing that this model was suitable for estimating breast-height diameter of C. kawakamii plant. Using the multidimensional time series model, diameter growth of C. kawakamii population for longer time series was estimated in order to gain data for establishing the relationship model of individual age, diameter growth and to increase its precision in determining individual age is by tree ring analysis. A combination method of determining individual age of C. kawakamii population by integrating annual ring data with its diameter using multidimensional time series model, which can improve precision of individual ages in C. kawakami, was produced: A = 9.966671944 + 1.146011591D + 0.041059628D² ? 0.000211907D³, where A and D represent individual age and diameter at breast height respectively in C. kawakamii population, the model coefficient correlation is 0.9998. The combination model, which shows that the regression relationship is significant and the model can exactly predict the individual age of population, is a valuable tool for determining individual ages in endangered plants.     

Spiral Plate Method for Bacterial Determination

A method is described for determining the number of bacteria in a solution by the use of a machine which deposits a known volume of sample on a rotating agar plate in an ever decreasing amount in the form of an Archimedes spiral. After the sample is incubated, different colony densities are apparent on the surface of the plate. A modified counting grid is described which relates area of the plate of volume of sample. By counting an appropriate area of the plate, the number of bacteria in the sample is estimated. This method was compared to the pour plate procedure with the use of pure and mixed cultures in water and milk. The results did not demonstrate a significant difference in variance between duplicates at the α = 0.01 level when concentrations of 600 to 12 × 10⁵ bacteria per ml were used, but the spiral plate method gave counts that were higher than counts obtained by the pour plate method. The time and materials required for this method are substantially less than those required for the conventional aerobic pour plate procedure.     

THEORY AND MEASUREMENT OF VISUAL MECHANISMS : V. FLASH DURATION AND CRITICAL INTENSITY FOR RESPONSE TO FLICKER

The relation between flash duration and mean critical intensity (white light) for threshold recognition of visual flicker, as a function of flash frequency, was investigated by means of measurements at five values of the light-time fraction: 0.10, 0.25, 0.50, 0.75, 0.90, with flash frequencies of the interrupted beam ranging from 2 to 60 per second. A square area, 6.1 x 6.1°, centrally fixated) was viewed monocularly; the discriminometer used provides automatically an artificial pupil 1.8 mm. in diameter. Except for the slight day-to-day fluctuation in the magnitudes of the parameters, the data for the observer used are shown to form an essentially homogeneous group. As for other animals tested, the F - log I_m curve is enlarged and moved toward lower flash intensities as the light-time fraction is decreased. The high intensity segments of the duplex curves are fitted by normal probability integrals for which F _max. and the abscissa of inflection are rectilinear functions of t_L(t_L + t_D), with opposite slopes. The third parameter, (σ''_{log I}, is invariant. The low intensity segments are composites, their shapes determined by the summation of the lower part of the high intensity curve with an overlapping low intensity population of effects. Both the rising and the declining branches of this latter assemblage suffer competitive partial suppression by the effects in the high intensity population. The detailed analysis shows that these results are consistent with the theory of the central, rather than peripheral, location of the dynamically recognizable elements in the determination of flicker.