Biomass compensation and plant responses to 7 years of plant functional group removals

Question: What is the role of functional group identity in determining community composition and dynamics? Location: A natural grassland in Yukon Territory, Canada. Methods: We selectively removed single plant functional groups (graminoids, forbs, legumes) to examine their effects on biomass compensation, the distribution of biomass among common and rare colonizing species, and plant species richness and diversity. Removals were conducted across two environmental treatments (fertilization and fungicide) to test if biomass compensation was context‐dependent. Biomass was estimated non‐destructively using point‐intercept sampling. Results: When graminoids or legumes were continuously removed, there was full biomass compensation by the remaining functional groups after 5 years, but only partial compensation when forbs were removed. Biomass compensation depended on the colonizing functional group; forbs showed no increase in biomass until 5 years after the removal of any functional group, but graminoids colonized quickly after removals. After any removal, the dominant species within each remaining functional group showed no compensatory growth, whereas the first subdominant forb and graminoid both increased in biomass. Rare species had a delayed response to removals; rare species biomass only increased beginning 5 years after removals. Context dependence was observed only in the response of subdominant species to removals, and these responses did not translate into context‐dependent effects on total estimated biomass. Conclusion: We show that the effects of losing a plant functional group depends both on the identity of the group removed and on the species remaining. In this northern grassland, most compensatory growth was by the subdominant species, which may determine the direction of community development in the long term.     

Assimilation of 1-14-C-octadecane by the (-)4 strain of Blakeslea trispora]

The assimilation of 1-14C-octadecane by the (-) 4 strain of Blakeslea trispora was studied, i.e. the kinetics of 14CO2 evolution and the distribution of the label in the biomass, proteins, lipids, and water-soluble products of the fungus. B1. trispora oxidized octadecane even in the presence of glucose in the medium. The distribution of the label between the protein and lipid fractions was different when the fungus was grown on octadecane or on a mixture of octadecane with glucose. After 6 hours of the incubation the content of the label in proteins (the experiment with 1-14C-octadecane as a carbon source) was 33 percent, and 60 percent in lipids. In the experiment with a mixture of glucose and hydrocarbon, the content of the label was 8 percent in proteins and 95 percent in lipids. These results show the participation of n-alkane and the products of its oxidation in the metabolism of Blakeslea trispora.     

Specific inhibition of glucosyltransferase of Streptococcus mutans

Clinical dextran, partially oxidized with sodium periodate, acts as a potent inhibitor of the extracellular glucosyltransferases of several cariogenic strains of oral Streptococcus mutans. Preincubation with oxidized dextran resulted in a rapid loss of up to 80% of the ability of the enzyme preparation to synthesize polysaccharide from sucrose, but there was no loss of enzyme activity when the oxidized dextrans were reduced with sodium borohydride before preincubation with enzyme. The presence of unoxidized clinical dextran during the preincubation period afforded the enzymes protection against inhibition by partially-oxidized dextran, but clinical dextran did not readily restore activity when it was added after incubation of the enzyme with oxidized polysaccharide. Fructosyltransferase, and glycogen and starch phosphorylase, activities were not inhibited by oxidized dextran, and the bacterial glucosyltransferases were not inhibited by partially oxidized glycogen and amylose. It is proposed that the potent and specific inhibition of glucosyltransferase by oxidized dextran results from the interaction of dialdehyde groups with reactive functional groups close to the dextran-binding site of the enzyme.     

Stabilization of the nuclear matrix by disulfide bridges: identification of matrix polypeptides that form disulfides.

The molecular structure of the nuclear matrix is still poorly understood. We have tried to assess which proteins are important structural elements by examining the process of stabilization of the nuclear matrix by sodium tetrathionate. Sodium tetrathionate stabilizes the nuclear matrix by oxidizing sulfhydryl groups to disulfides. We show that tetrathionate-stabilized matrices are disassembled in buffers containing SDS, indicating that the stabilized nuclear matrix is not a continuous network of cross-linked proteins. Using monobromobimane, a thiol-specific fluorescent reagent, we show that many protein thiols in the stabilized matrix are oxidized. By chromatography on activated thiol-Sepharose we estimated that about 50% of the matrix proteins had oxidized sulfhydryl groups. The protein composition of the material bound to activated thiol-Sepharose was similar to that of the not-bound material. A few proteins are highly enriched in the fraction that was bound to the column. This indicates that many matrix protein species are partially oxidized and that some proteins are completely oxidized. The oxidized protein thiols are found in relatively large complexes as determined by SDS gel-electrophoresis under nonreducing conditions. These results are interpreted in terms of protein-protein interactions in the matrix. The possible role of thiols and disulfides in the in vivo organization of the nucleus is discussed.     

Oxidation of methane in the absence of oxygen in lake water samples.

Methane was oxidized to carbon dioxide in the absence of oxygen by water samples from Lake Mendota, Madison, Wis. The anaerobic oxidation of methane did not result in the assimilation of carbon from methane into material precipitable by cold 10% trichloracetic acid. Only samples taken at the suface of the sediment of Lake Mendota were capable of catalyzine the anaerobic oxidation of methane. The rate of methane oxidation in the presence of oxygen was highest in samples taken from near the thermocline. Of the radioactive methane oxidized, 30 to 60% was assimilated into material precipitable by cold 10% trichloroacetic acid during aerobic incubation of the samples. These data support the conclusion that two distinct groups of methane-oxidizing organisms occur in stratifield lakes. Enrichments with acetate and methane as the sole sources of carbon and energy and sulfate as the electron acceptor resulted in the growth of bacteria that oxidize methane. Sulfate, acetate, and methane were all required for growth of enrichments. Acetate was not oxidized to carbon dioxide but was assimilated by cells. Methane was not assimilated but was oxidized to carbon dioxide in the absence of air.     

Oxidation of methane in the absence of oxygen in lake water samples.

Methane was oxidized to carbon dioxide in the absence of oxygen by water samples from Lake Mendota, Madison, Wis. The anaerobic oxidation of methane did not result in the assimilation of carbon from methane into material precipitable by cold 10% trichloracetic acid. Only samples taken at the suface of the sediment of Lake Mendota were capable of catalyzine the anaerobic oxidation of methane. The rate of methane oxidation in the presence of oxygen was highest in samples taken from near the thermocline. Of the radioactive methane oxidized, 30 to 60% was assimilated into material precipitable by cold 10% trichloroacetic acid during aerobic incubation of the samples. These data support the conclusion that two distinct groups of methane-oxidizing organisms occur in stratifield lakes. Enrichments with acetate and methane as the sole sources of carbon and energy and sulfate as the electron acceptor resulted in the growth of bacteria that oxidize methane. Sulfate, acetate, and methane were all required for growth of enrichments. Acetate was not oxidized to carbon dioxide but was assimilated by cells. Methane was not assimilated but was oxidized to carbon dioxide in the absence of air.     

三峡库区马尾松根系生物量的空间分布

以三峡库区主要植被马尾松人工林为研究对象,用内径为10 cm的根钻,分别在马尾松中龄林、近熟林和成熟林内,据树干0.5、1.0、1.5 m和2.0 m处设置取样点,各样点按0-10、10-20、20-30、30-40、40-60 cm将土壤分为5个垂直层次,对马尾松根系的空间分布格局进行调查。结果表明:(1)三峡库区马尾松总根系生物量(0-10 mm)为中龄林(4.72 t/hm²)显著高于成熟林(2.94 t/hm²)和近熟林(2.40 t/hm²)(P<0.05)。细根(0-2 mm)生物量随年龄增加而递减,差异不显著(P>0.05);(2)马尾松3个林龄中根系生物量表现出一定的水平分布特征,但具体趋势表现各异,细根生物量最大值均出现在距离样木1.0 m处;(3)细根主要分布在土壤上层,其中47.53%-71.73%的活细根集中在0-20 cm土壤深度内,且随土层的加深,其生物量明显减少。粗根(2-10 mm)则主要分布于20-60 cm土层范围内;(4)根系直径越小,受环境变化越明显。马尾松细根生物量分布主要受土壤深度的影响,树龄和不同水平距离对细根分布格局影响不显著(P>0.05),各因素对粗根生物量的影响均未达到显著水平(P>0.05)。     

Southeastern Chukchi Sea (Alaska) epibenthos

Epibenthos of the southeastern Chukchi Sea, inclusive of Kotzebue Sound, was sampled in 1976. Crustaceans dominated abundance while echinoderms, mainly sea stars, dominated biomass. Spatial distribution of fauna was determined by cluster analysis. Scavenger-predators were dominant trophic groups, although suspension feeders dominated some regions. Unexpected high abundance and biomass under Alaska Coastal Water and factors related to presence and distribution of fauna are discussed. Dissimilarities between the benthic systems of the southeastern and northeastern Chukchi Seas are attributed to more complex water mass and flow patterns in the southern system. Entrained particulate organic carbon disperses through the area to support an abundant and apparently highly productive benthic fauna, which sustains resident and transient populations of demersal fishes and marine mammals. Epibenthos was sampled again in 1998 and, although little change was apparent in community composition, many taxa had higher abundance and biomass than 22 years earlier, a trend similar to findings observed in the northeastern Bering Sea.Electronic Supplementary Material Supplementary material is available for this article at     

Effect of excessive intake of thermally oxidized sesame oil on lipids,lipid peroxidation and antioxidants' status in rats

Fresh and thermally oxidized sesame, groundnut and coconut oils were fed to different groups of rats, as high fat diet (20%). Feeding fresh and thermally oxidized oils increased the levels of total cholesterol, low density lipoprotein cholesterol (LDL-C), and phospholipids but high density lipoprotein cholesterol (HDL-C) decreased in all the experimental animals. The levels of very low density lipoproteincholesterol (VLDL-C) and triacylglycerol increased only in groundnut and coconut oils-fed groups and decreased in sesame oil-fed group when compared with the control. When fresh and the corresponding thermally oxidized oils-fed groups were compared with the control, total cholesterol and LDL-cholesterol alone increased while triacylglycerol, VLDL-cholesterol, HDL-cholesterol, HDL/LDL ratio and phospholipids decreased. Thiobarbituric acid reacting substances increased in all the experimental animals and more so in corresponding thermally oxidized oils. It was less pronounced in sesame oil-fed groups when compared with the corresponding other oils-fed groups. Feeding of thermally oxidized oils decreased the levels of vitamin E, vitamin C and reduced glutathione when compared with fresh oils. Among the three thermally oxidized edible oils, sesame oil exhibited lesser risk for hyperlipidemic disorders.     

Role of functional groups of human plasma and luminol in scavenging of NaOCl and neutrophil-derived hypochlorous acid.

Hypochlorous acid HOCl/OCl- and other oxidants derived from stimulated polymorphonuclear leukocytes are involved in tissue damage during a number of pathological processes. In order to obtain more detailed information on possible reactions of HOCl/OCl- the effects of both NaOCl and PMN-derived hypochlorous acid on functional groups of amino acid solutions and human plasma are studied. In valine and lysine solutions NaOCl diminishes the number of amino groups in a molar ratio of 1:1 between NaOCl and amino groups. In cysteine and methionine samples the decrease of amino groups starts only after all sulfhydryl or thioether groups are oxidized by NaOCl. If freshly prepared human plasma is treated with increasing amounts of NaOCl all plasma SH groups are oxidized first, then probably the thioether groups and only after this the amino groups are affected. Furthermore, it was found, that the reactivity of luminol against NaOCl is similar to that of amino groups. Increasing amounts of SH groups of components of human plasma are oxidized by incubation with PMA-stimulated polymorphonuclear leukocytes dependent on the incubation time. Plasma amino groups are not affected under the same experimental conditions. The addition of plasma to FMLP-stimulated PMN in the presence of luminol decreases that part of chemiluminescence caused by extracellularly generated hypochlorous acid. Plasma samples pretreated with NaOCl cause a lower inhibition of light generation in FMLP-stimulated PMN only when more than 4.10(-8) mol NaOCl per mg protein are used to pretreat plasma. It is assumed that in the development of tissue injuries caused by infiltrated PMN the following sequence of damage occurs in accessible tissue regions. First, the sulfhydryl groups are oxidized, then the thioether groups, and only after this amino and other target groups are affected.     

Measurement of potential activity of fixed nitrifying bacteria in biological filters used in drinking water production

Nitrification during biological filtration is being used more and more in drinking water production to remove ammonia, which can be the source of several water quality problems during distribution. In this process, ammonia is converted into nitrite and then into nitrate by fixed autotrophic nitrifying bacteria. The purpose of this work was to develop a technique to estimate fixed nitrifying biomass (sum of ammonia- and nitrite-oxidizing populations). The quantification of autotrophic nitrifying biomass was determined by potential nitrifying activity measurement. The production of oxidized forms of inorganic nitrogen (nitrates and nitrites) was measured after an incubation of 2 cm³ of colonized solid support in the presence of a 5-ml nitrifier medium containing 10 mg N-NH₄ L⁻¹ for 30 min at 32°C. The production rate of oxidized nitrogen in optimal conditions was measured and converted into nitrifying biomass by using the maximum specific oxidizing activity. This technique was shown to be appropriate for conditions encountered in the biological filters used in drinking water production and sufficiently simple to be used for routine measurements. Journal of Industrial Microbiology & Biotechnology (2000) 24, 161–166. Received 28 July 1999/ Accepted in revised form 11 November 1999     

Involvement of phospholipase A2 in Pseudomonas aeruginosa-mediated PMN transepithelial migration

Oxidative damage to surfactant can decrease lung function in vivo. In the current study, our two objectives were: 1) to examine whether the adverse effects of oxidized surfactant would be accentuated in animals exposed to high tidal volume ventilation, and 2) to test whether supplementation with surfactant protein A (SP-A) could improve the function of oxidized surfactant in vivo. The first objective was addressed by evaluating the response of surfactant-deficient rats administered normal or oxidized surfactant and then subjected to low tidal volume (6 ml/kg) or high tidal volume (12 ml/kg) mechanical ventilation. Under low tidal volume conditions, rats administered oxidized surfactant had impaired lung function, as determined by lung compliance and arterial blood gas analysis, compared with nonoxidized controls. Animals subjected to high tidal volume ventilation had impaired lung function compared with low tidal volume groups, regardless of the oxidative status of the surfactant. The second experiment demonstrated a significantly superior physiological response in surfactant-deficient rats receiving SP-A containing oxidized surfactant compared with oxidized surfactant. Lavage analysis at the end of the in vivo experimentation showed no differences in the recovery of oxidized surfactant compared with nonoxidized surfactant. We conclude that minimizing excessive lung stretch during mechanical ventilation is important in the context of exogenous surfactant supplementation and that SP-A has an important biophysical role in surfactant function in conditions of oxidative stress. Furthermore, the oxidative status of the surfactant does not appear to affect the alveolar metabolism of this material.     

间伐对川西亚高山粗枝云杉人工林细根生物量及碳储量的影响

以川西亚高山50年生粗枝云杉(Picea asperata)人工林为研究对象, 探讨了间伐对粗枝云杉人工林1-5级细根生物量及碳储量的影响。结果表明: 粗枝云杉人工林细根生物量和碳储量随根序等级的增加而显著增加(p < 0.05), 5级根序中1级根生物量及碳储量最小, 5级根生物量及碳储量最大。与对照(间伐0%)相比, 间伐对粗枝云杉人工林林分细根生物量及碳储量有显著影响(p < 0.05); 而对单株细根生物量影响不一, 间伐10%和20%与对照没有显著性差异(p > 0.05)。间伐显著影响生物量在各根序中的分配, 随着间伐强度的增加, 1、2级细根中生物量分配比例增加, 1级细根的生物量增加幅度最大; 3-5级细根的生物量分配比例减小, 5级细根减少幅度最大。其中, 间伐50%显著减少了细根在下层(20-40 cm)土壤中的生物量比例(p < 0.05), 但与间伐20%和30%无显著差异(p > 0.05)。     

Life history patterns shape energy allocation among fishes on coral reefs

Although critically important, the link between animal life histories and ecosystem energetics is seldom explored. In the pursuit of ecological simplification, ecosystem properties are typically described by models based on static counts, where organisms are aggregated into trophic- or size-based groups. Consequently, output is often based on an assumption that larger group biomass equals greater energetic contribution. Here, we modelled the individual growth of over 58,000 fishes from 74 genera within a coral reef ecosystem to investigate the role and importance of taxon-specific life histories to the division, spatial distribution and relative contribution of biomass production within 14 coral reef fish families. Rank changes among families in standing biomass to biomass production indicated that small cryptic families (e.g. Gobiidae and Blenniidae) exhibit collective growth potentials equal to or exceeding those of many other common families composed of individuals with body-sizes 1–3 orders of magnitude larger. Remaining at high risk of predation throughout their lives as a consequence of their small size, these cryptic fishes also provide a constant food resource and supply of reproductive energy to coral reefs throughout the year. Enhanced further by the strength and diversity of their trophic relationships within food webs, the highly productive nature of these small cryptic fishes suggests they make a substantial contribution to the flow of energy in coral reef ecosystems via predatory pathways. It appears that life histories leave a strong imprint on ecosystem energy fluxes and illustrate the importance of incorporating taxon-specific features when assigning values to key ecosystem processes. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Physiological state of a microbial community in a biomass recycle reactor

The transition in physiological state was investigated between a carbon-limited chemostat population and microbes growing very slowly in a biomass recycle reactor. The mixed microbial population was metabolizing a mixture of biopolymers and linear alkylbenzene sulfonate, formulated to represent the organic load in graywater. Biomass increased 30-fold during the first 14 days after a shift from chemostat to biomass recycle mode. The ratios of ATP and RNA to cell protein decreased over the first days but then remained constant. The specific rate of CO₂ production by microbes in the reactor decreased 6-fold within 24 h after the shift, and respiratory potentials declined 2–3 fold during the first 7 days. Whereas chemostat cultures used equal proportions of organic carbon substrate for catabolism and anabolism, the proportion of organic substrate oxidized to CO₂ rose from 62 to 82% over the first 8 days in a biomass recycle reactor, and eventually reached 100% as this reactor population exhibited no net growth. Biomass recycle populations removed from the system and subjected to a nutritional shift-up did not immediately initiate exponential growth. The physiological state of cells in the biomass recycle reactor may be distinct from those grown in batch or continuous culture, or from starved cells. Received 02 June 1997/ Accepted in revised form 20 February 1998     

Studies on oxidized low density lipoproteins. Controlled oxidation and a prostaglandin artifact

Low density lipoproteins (LDL), isolated by ultracentrifugal flotation, were oxidized (LDLOXID) slowly during dialysis against 0.15 M NaCl and subsequent incubation in 96% air-4% CO2 at 37 degrees C. Butylated hydroxytoluene prevented LDL oxidation. LDL preparations from different sera were oxidized at different rates and the degree of lipid peroxidation was controlled by varying the incubation time. Mild oxidation did not alter the electrophoretic mobility of the LDLOXID preparations. LDLOXID contained lipid peroxides in neutral lipids, had increased amounts of lysophosphatidylcholine, and contained a number of complex oxidation products that were generated from the oxidation of free fatty acids. These oxidation products included large amounts of soluble material that cross-reacted with antibodies to PGE2 but not 6-keto-PGF1 alpha. The amount of cross-reacting material was proportional to the degree of lipid peroxidation. Cross-reacting material in LDLOXID preparations was evidently formed from the oxidation of free fatty acids released from LDL, since cross-reacting material was also formed when a synthetic fat emulsion was oxidized in the presence of free arachidonic acid.     

Oxidized lipid depresses canine growth,immune function,and bone formation

Dietary oxidized lipids can increase oxidative stress and potentially contribute to a variety of disease syndromes. This research describes the first use of a canine model to assess the effects of dietary oxidized lipids on growth, antioxidant status, and some immune functions. Three groups of eight, two-month old coon-hound puppies were pair fed diets for 16 weeks. The control diet contained <50 ppm aldehydes, and two additional diets contained thermally oxidized lipids targeted to contain 100 ppm aldehydes (medium-oxidation) and 500 ppm aldehydes (high-oxidation). Dogs fed the high-oxidation diet weighed less than those from the medium-oxidation (P < 0.05) and control groups (P < 0.001) at the end of the study. Oxidized lipids reduced serum vitamin E levels, total body fat content, and bone appositional rate. At different time points of the study, peripheral blood neutrophils and monocytes from dogs fed the HO diet had reduced oxidative burst capacity and produced less superoxide and hydrogen peroxide when stimulated with phorbol esters compared to the control group. Lymphocyte blastogenesis in response to concanavalin A was suppressed by dietary oxidized lipid. This study indicates that dietary oxidized lipids negatively affect the growth, antioxidant status, and some immune functions of dogs. Importantly, some effects are evident at 100 ppm aldehydes in the diet, which is a moderate level of oxidation. The rapid growth and weight gain of the dog during the first 6 months of life may also provide a better model for assessing the risks of dietary oxidized lipid in children and adolescents than previously used rodent models.     

Proteasome-dependent degradation of oxidized proteins in MRC-5 fibroblasts

Fibroblasts were exposed to various concentrations of hydrogen peroxide and the removal of oxidized proteins was followed by determining protein-bound carbonyls. Fibroblasts are able to increase the turnover of metabolically radiolabeled proteins after treatment with hydrogen peroxide. It was demonstrated for the first time, that the increased protein turnover was accompanied by a removal of protein-bound carbonyl groups. The proteasome-specific inhibitor lactacystin was able to inhibit the elimination of protein-bound carbonyl groups. Therefore, the key role of the proteasome in the degradation of oxidized proteins in fibroblasts could be demonstrated.     

崇明东滩盐沼湿地大型底栖动物功能群分布特征及其影响因子

以长江口崇明东滩典型盐沼分布区为研究区域,在不同站位固定样地月际取样调查基础上,分析了大型底栖动物食性功能群沿高程梯度的分布特征及其主要影响因子,特别是外来入侵植物的影响。结果表明,不同高程区域,大型底栖动物优势种不同,除中潮带分布区以杂食性和植食性功能群为主外,其余各区域均以杂食性功能群为主。沿高程梯度,大型底栖动物各功能群的多度和生物量均发生极显著的变化(P<0.01),而不同功能群在不同植被带间的差异情况有所不同。其中,高程最低的光滩区域,肉食性功能群多度和生物量均显著高于高程相对较高的植被带(P<0.05);中潮带海三棱藨草分布区植食性功能群多度和生物量均显著高于其他高程区域(P<0.05)。主要生境因子,包括沉积物总磷、总氮、有机质、速效磷、硝态氮、铵态氮、中值粒径,以及植物的植株高度和地上部分生物量干重等指标,均随高程梯度变化显著(P<0.05),但不同因子变化特征有所不同。外来种互花米草的入侵并未造成相应区域大型底栖动物优势功能群的改变,但区域内杂食性功能群的多度和生物量均显著增加(P<0.05);环境因子中的部分因子,包括沉积物速效磷、硝态氮、铵态氮和有机质含量,表现出与同高程的本地种芦苇分布区间的显著差异(P<0.05)。导致大型底栖动物食性功能群组成及分布发生变化是多种生境因子综合作用的结果,而对不同食性功能群起作用的主要影响因子存在差异。沉积物营养盐含量差异是造成大型底栖动物食性功能群多度变化的最主要因素;沉积物盐度是影响大型底栖动物食性功能群生物量的最主要因素。要完整揭示底栖动物功能群分布特征及其影响因子的作用机理,需要综合考虑水文、植被、沉积物等多种生境因子。     

Infection, propagation, distribution and stability of plant virus in hairy root cultures

Nicotiana benthamiana hairy root cultures were infected with tobacco mosaic virus (TMV) and used for in vitro plant virus propagation. The roots were infected with TMV by addition of virus to the medium at the same time as root inoculation. Viral accumulation in the biomass was 7-11-fold greater when the initial infection was carried out in B5 medium rather than sodium phosphate buffer; virus accumulation also increased with increasing viral inoculum concentration. The amount of TMV accumulated in the biomass was similar when virus was retained in the medium for the duration of the cultures and when the inoculum virus was removed 23h after addition to the roots. In roots with established infections, the concentration of virus remained relatively constant and did not increase with further root growth. The distribution of virus within individual root mats harvested from shake flasks was not uniform; there was also significant variability in viral accumulation between replicate hairy root cultures. The picture that emerges from this work is that in vitro viral accumulation in hairy root cultures depends strongly on the viral inoculum concentration applied and the initial level of primary infection achieved, even though primary infection by external virus occurs mainly within only the first few hours of exposure to the biomass and is followed by substantial secondary infection by viral progeny within the root tissue.