5-Azadeoxycytidine induced undercondensation in the giant X chromosomes of Microtus agrestis

Fibroblasts of female Microtus agrestis were treated with 5-azadeoxycytidine (5-aza-dCyd) at a final concentration of 10^–5 M during the last 2 h of culture. This cytidine analogue induces distinct undercondensation of the constitutive heterochromatin in the giant X chromosomes. The undercondensed heterochromatic thread exhibits longitudinal segmentation reminiscent of a chromomere pattern. In the late-replicating X chromosome, 5-aza-dCyd also inhibits condensation of the genetically inactivated euchromatin (facultative heterochromatin). The described effects of 5-aza-dCyd on the X chromosome structure appear to be incorporation independent.     

Fluorescence banding pattern of the chromosomes of Microtus agrestis with a benzimidazol derivative

Summary The fluorescent banding pattern of the chromosomes of Microtus agrestis following staining with a benzimidazol derivative (Hoechst 33258) has been studied. All chromosomes allow easy identification because of their characteristic longitudinal differentiation. The X chromosomes of both sexes show intense fluorescence of the long arm and of a small proximal segment of the short arm, while the rest of the short arm reveals banding patterns. In the Y chromosome, the very short arm is nonfluorescent and the entire long arm shows bright fluorescence. Examination of the interphase nuclei of cultured fibroblasts suggests that the facultative and the constitutive heterochromatin fluoresce intensely only when strongly condensed. In contrast to some other species, in which heterochromatic chromosomal segments show a characteristic staining behaviour, i.e. either positive or negative, with the fluorochrome benzimidazol derivative, this compound behaves rather indifferently in the case of the heterochromatic contents in Microtus agrestis. The staining effects of the benzimidazol dye have also been compared with the various Giemsa and the Quinacrine staining techniques.

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Zusammenfassung Bei Verwendung des Benzimidazol-Derivat Hoechst 33 258 läßt sich an den Chromosomen von Microtus agrestis ein Fluorescenz-Bandenmuster beobachten, das an den Autosomen eine Identifizierung der einzelnen Elemente ermöglicht. Die X-Chromosomen beider Geschlechter weisen eine starke Fluorescenz des linken Arms und eines kleinen proximalen Segments des kurzen Arms auf, während der übrige kurze Arm ein Bandenmuster zeigt. Am Y-Chromosom ist der gesamte lange Arm hell fluorescierend, sein sehr kleiner kurzer Arm bleibt ungefärbt. Die Untersuchung von Interphasekernen in vitro kultivierter Fibroblasten spricht dafür, daß die Fluorescenz des konstitutiven und fakultativen Heterochromatins überwiegend auf seiner etwas stärkeren Kondensation beruht. Während das Benzimidazol-Derivat bei andren Species das konstitutive Chromatin elektiv entweder durch positive oder durch negative Fluorescenz darstellt, verhält es sich bei Microtus agrestis indifferent.

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Supported by Alexander von Humboldt Foundation.     

Late DNA replicaion of X chromosomes in female and pseudofemale cells of Microtus agrestis.

The late replication pattern of the short arms of the X chromosomes of Microtus agrestis was studied in female cells and in cells with 2 X chromosomes of male origin by means of the BUdR-Giemsa technique and of 3H-thymidine labelling. The light absorption of Giemsa stained chromosome sections which were unifilarly substituted with BUdR (labelled), was found to be 59.2% of that of unlabelled chromosomes. In female cells, asynchrony of DNA replication of both X chromosomes indicated the presence of facultative heterochromatin in the X2 and euchromatin in the X1. In the male cells only euchromatic X chromosomes were observed in diploid XX and XO cells as well as in triploid XXY, XX and XO cells. The results show that inactivation of an X chromosone in vitro, in cells with more than one originally active X chromosome does not occur even after a culture duration of several years.     

DNase I sensitivity of Microtus agrestis active,inactive and reactivated X chromosomes in mouse-Microtus cell hybrids

We isolated Microtus agrestis-mouse somatic cell hybrid clones which had retained either the active or the inactive M. agrestis X chromosome. In both hybrid clones the X chromosomes retained their original chromatin conformation as studied by the in situ nick translation technique — the active X chromosome retained its high sensitivity to DNase I while the inactive one remained insensitive. A clone in which the hypoxanthine guanine phosphoribosyltransferase (HPRT) gene had been spontaneously reactivated was isolated from the hybrid containing the inactive X chromosome. The in situ nick translation technique was used to study possible DNA conformation changes in the euchromatin of the inactive X chromosome with special reference to the reactivated HPRT locus. We found that the euchromatin in this X chromosome exhibited the same low sensitivity to DNase I as is characteristic of the inactive X chromosome.Professor Marcus passed away on 2 January 1987     

Localization of repetitive DNA in the chromosomes of Microtus agrestis by means of in situ hybridization

Heterochromatin in the European field vole, Microtus agrestis, was studied using a special staining technique and DNA/RNA in situ hybridization. The heterochromatin composed the proximal 1/4 of the short arm and the entire long arm of the X chromosome, practically the entire Y chromosome and the centromeric areas of the autosomes. By using the DNA/RNA in situ hybridization technique, repeated nucleotide sequences are shown to be in the heterochromatin of the sex chromosomes.Supported in part by Research Grants DRG-1061 and 269 from the Damon Runyon Memorial Fund for Cancer Research, G-373 and G-267 from the Robert A. Welch Foundation.     

Heterochromatin and late replication in the chromosomes of the rat

The distribution of heterochromatin in the chromosomes of the rat was determined by analysing two of its properties: late replication and differential stain with the DNA d-r method. The presence of late and non-late replicating c-heterochromatin in the genome of Rattus norvegicus indicates that this chromatin is an heterogeneous substance exhibiting different properties. Furthermore, the existence of heterochromatin formed by nonrepeated sequences or by sequences with a low degree of repetitiveness is suggested by the presence of late replicating areas which do not react with the DNA d-r method.Supported by grants from the Conicet and Cic.     

Meiotic association and segregation of the achiasmatic giant sex chromosomes in the male field vole (Microtus agrestis)

Controversy exists regarding the meiotic behaviour of the giant sex chromosomes during spermatogenesis in the field vole, Microtus agrestis. Both univalents and bivalents have been observed between diakinesis and metaphase I. These differences seem to be dependent on the technique used. The present study employs electron microscopy of serially sectioned testes tubules and light microscopy of microspread preparations to re-examine the behaviour of sex chromosomes during meiosis. In microspreads, about one-third of the early pachytene nuclei examined showed end joining of the X and Y axes. The longitudinal heterogeneity of the chromosomes in the form of axial thickenings allowed the detection of two different end-joining patterns. In the remaining early pachytene cells as well as in all mid to late pachytene cells seen, the X and Y axes had, though near to each other, no contact in the form of a synaptonemal complex. If a synaptonemal complex is a prerequisite for genetic exchange, the sex chromosomes in M. agrestis males must be achiasmatic. The analysis of serial sections through an early pachytene and a late prophase I nucleus with the electron microscope revealed that the sex chromosomes occupied a common area. By metaphase I, the centromeres of the X and Y were oriented towards opposite spindle poles while the chromosomes remained attached to one another by their distal segments at the level of the metaphase I plate. As a consequence of the large size of the sex chromosomes their centromeres lay close to the spindle poles. In anaphase I the sex chromosomes maintained their metaphase position until the autosomes approached the spindle poles. During autosomal migration a medial constriction developed where the sex chromosomes were mutually associated, the X and Y became separated, and joined the autosomes. In metaphase II the chromatids of the sex chromosomes lay side by side and exhibited a delayed separation in the subsequent anaphase. It is suggested that heterochromatin, which represents a major part of both sex chromosomes, plays a role in the association of the two achiasmatic sex chromosomes in metaphase I and in the delayed separation of the chromatids of the sex chromosomes in anaphase II.Dedicated to Prof. C.-G. Arnold (Erlangen) on the occasion of his 60th birthday     

The pattern of DNA replication in the chromosomes of Puschkinia libanotica

The uptake of H³-thymidine into the chromosomes of Puschkinia libanotica has been studied in plants possessing or lacking a heterochromatic B chromosome. The pattern of H³-thymidine uptake by the A chromosomes at the end of the S phase is similar in plants of both genotypes. Regions around the centromere take up more H³-thymidine at the end of S than do more distal regions. The rate of uptake into the heterochromatin of the B chromosome increases towards the end of S, but there is no evidence that synthesis in the B chromosome carries on after the completion of DNA synthesis in the euchromatic A complement. It is proposed that at the end of the S phase more replicons in the heterochromatin of the B chromosome are engaged in DNA synthesis than in euchromatin.     

Analysis of deoxyribonucleic acid replication in human X chromosomes by fluorescence microscopy.

The genetically inactive, late-replicating human female X chromosome can be effectively distinguished from its more active, earlier-replicating homologue, when cells are grown according to the appropriate BrdU-33258 Hoechst protocol. Results obtained from a fluorescence analysis of DNA replication in X chromosomes are consistent with those from previous autoradiographic studies, but reflect additional sensitivity and resolution offered by the BrdU-Hoechst methodology. Both qualitative and quantitative differences in 33258 Hoechst fluorescence intensity, reflecting alterations in replication kinetics, can be detected between the two X chromosomes in female cells. The pattern of replication in the single X chromosome in male cells is indistinguishable from that of the early female X. Intercellular fluctuations in the distribution of regions replicating early or late in S phase, particularly with reference to the late female X, can be localized to structural bands, suggesting multifocal control of DNA synthesis in X chromosomes.     

Changes over time in the spatiotemporal dynamics of cyclic populations of field voles (Microtus agrestis L.)

We demonstrate changes over time in the spatial and temporal dynamics of an herbivorous small rodent by analyzing time series of population densities obtained at 21 locations on clear cuts within a coniferous forest in Britain from 1984 to 2004. Changes had taken place in the amplitude, periodicity, and synchrony of cycles and density-dependent feedback on population growth rates. Evidence for the presence of a unidirectional traveling wave in rodent abundance was strong near the beginning of the study but had disappeared near the end. This study provides empirical support for the hypothesis that the temporal (such as delayed density dependence structure) and spatial (such as traveling waves) dynamics of cyclic populations are closely linked. The changes in dynamics were markedly season specific, and changes in overwintering dynamics were most pronounced. Climatic changes, resulting in a less seasonal environment with shorter winters near the end of the study, are likely to have caused the changes in vole dynamics. Similar changes in rodent dynamics and the climate as reported from Fennoscandia indicate the involvement of large-scale climatic variables.     

Changes in gene position are accompanied by a change in time of replication

The globin and immunoglobulin multigene families have been used to study the effect of chromosomal organization on the time of gene replication. Some of the genes are late-replicating, providing the first identification of late-replicating sequences that are not highly repetitive. One is a member of the mouse alpha-globin gene family, which consists of genes mapping to three different chromosomes. The other genes in this family replicate early during S. Our studies demonstrate that immunoglobulin gene rearrangements and rearrangements between these genes and the c-myc oncogene are accompanied by dramatic differences in their temporal order of replication. We conclude that a gene's position in the chromosome, rather than its sequence, determines the time of replication. We suggest that the differences in association with gene rearrangement result from changes in the proximity of the affected gene to sites that control the temporal order of replication during S.     

Mapping changes to vegetation pattern in a restoring wetland: Finding pattern metrics that are consistent across spatial scale and time

Tidal salt marshes in the San Francisco Estuary region display heterogeneous vegetation patterns that influence wetland function and provide adequate habitat for native or endangered wildlife. In addition to analyzing the extent of vegetation, monitoring the dynamics of vegetation pattern within restoring wetlands can offer valuable information about the restoration process. Pattern metrics, derived from classified remotely sensed imagery, have been used to measure composition and configuration of patches and landscapes, but they can be unpredictable across scales, and inconsistent across time. We sought to identify pattern metrics that are consistent across spatial scale and time – and thus robust measures of vegetation and habitat configuration – for a restored tidal marsh in the San Francisco Bay, CA, USA. We used high-resolution (20 cm) remotely sensed color infrared imagery to map vegetation pattern over 2 years, and performed a multi-scale analysis of derived vegetation pattern metrics. We looked at the influence on metrics of changes in grain size through resampling and changes in minimum mapping unit (MMU) through smoothing. We examined composition, complexity, connectivity and heterogeneity metrics, focusing on perennial pickleweed (Sarcocornia pacifica), a dominant marsh plant. At our site, pickleweed patches grew larger, more irregularly shaped, and closely spaced over time, while the overall landscape became more diverse. Of the two scale factors examined, grain size was more consistent than MMU in terms of identifying relative change in composition and configuration of wetland marsh vegetation over time. Most metrics exhibited unstable behavior with larger MMUs. With small MMUs, most metrics were consistent across grain sizes, from fine (e.g. 0.16 m²) to relatively large (e.g. 16 m²) pixel sizes. Scale relationships were more variable at the landcover class level than at the landscape level (across all classes). This information may be useful to applied restoration practitioners, and adds to our general understanding of vegetation change in a restoring marsh.     

Analysis of the replication pattern of Chinese hamster chromosomes using 5-bromodeoxyuridine suppression of 33258 Hoechst fluorescence

Chinese hamster fibroblasts were synchronized and given 5-bromodeoxyuridine for DNA synthesis except during one hour of the S phase when thymidine was present in the medium. In the next mitosis, chromosomes stained with 33258 Hoechst were banded in appearance when photographed by fluorescence microscopy. The bright regions corresponded to the chromosome segments replicated during the thymidine exposure in the S phase. The segments replicated together during any one hour produced three distinct patterns which were characteristic of early, middle, and late S phase. Most of the fluorescent regions corresponded in size and position with G-bands of these chromosomes. There was no correlation between the staining behavior of a band in G-band procedure and its time-of-replication, i.e., both light and dark G-bands were replicated during early, middle, and late S phase. However, it appears that all of the DNA within a single band is replicated together within one third of the S phase.     

Linkage of the loci for glucose-6-phosphate dehydrogenase and for inosinic acid pyrophosphorylase to the X chromosome of the field-vole Microtus agrestis.

It has been proposed that there are strong selective pressures which have acted during the evolution of mammals to conserve the linkage of genes on the X chromosome. If so, loci that are known to be X-linked in one mammalian species should be X-linked in others. The loci for glucose-6-phosphate dehydrogenase (E.C. 1.1.1.49) and for inosinic acid pyrophosphorylase (E.C. 2.4.2.8) are known to be X-linked in a variety of mammals. The linkage of these loci to the X chromosome of the field-vole, Microtus agrestis, is indicated by the pattern of segregation of these loci in hybrid cells derived by fusion of mouse cells with vole lymphocytes.     

Cell fusion-induced quick change in replication time of the inactive mouse X chromosome: an implication for the maintenance mechanism of late replication.

It is unknown how and why the genetically inactivated mammalian X chromosome replicates late in S phase. There are also occasional inactive X chromosomes characterized by an opposite behavior replicating early in S phase. Two clonal cell lines, MTLB3 and MTLH8, isolated from a cultured murine T-cell lymphoma have an allocyclic X chromosome of the latter type. This precociously replicating X chromosome was judged to be genetically inactive as the late replicating one. Immediately after fusion with another cell line, the precociously replicating X chromosome from these cells starts to replicate late in S phase. This finding seems to suggest that late replication characterizing the inactive X chromosome is actively maintained by a trans-acting factor in female somatic cells, and that its lack entails a switch from late replication to precocious replication. It remains unknown whether this presumptive factor also modifies the autosomal replication pattern.