Phylogenomics of several deer species revealed by comparative chromosome painting with Chinese muntjac paints

A set of Chinese muntjac (Muntiacus reevesi) chromosome-specific paints has been hybridized onto the metaphases of sika deer (Cervus nippon, CNI, 2n = 66), red deer (Cervus elaphus, CEL, 2n = 62) and tufted deer (Elaphodus cephalophus, ECE, 2n = 47). Thirty-three homologous autosomal segments were detected in genomes of sika deer and red deer, while 31 autosomal homologous segments were delineated in genome of tufted deer. The Chinese muntjac chromosome X probe painted to the whole X chromosome, and the chromosome Y probe gave signals on the Y chromosome as well as distal region of the X chromosome of each species. Our results confirmed that exclusive Robertsonian translocations have contributed to the karyotypic evolution of sika deer and red deer. In addition to Robertsonian translocation, tandem fusions have played a more important role in the karyotypic evolution of tufted deer. Different types of chromosomal rearrangements have led to great differences in the genome organization between cervinae and muntiacinae species. Our analysis testified that six chromosomal fissions in the proposed 2n = 58 ancestral pecoran karyotype led to the formation of 2n = 70 ancestral cervid karyotype and the deer karyotypes is more derived compare with those of bovid species. Combining previous cytogenetic and molecular systematic studies, we analyzed the genome phylogeny for 11 cervid species.     

The founder effect theory: quantitative variation and mdg-1 mobile element polymorphism in experimental populations of Drosophila melanogaster

The chromosomes of 14 specimens of the genus Reithrodon from three different localities of Argentina and two localities of Uruguay were studied using G-and C-banding techniques. Specimens of Uruguay showed a karyotype of 2n=28 chromosomes having a large metacentric X, and a telocentric Y chromosome. This karyotype is very similar to that recently described in a sample from southern Brazil, differing only in the nature of the Y chromosome, which is metacentric in the Brazilian form. All specimens from Argentina showed a 2n=34 karyotype, differing from the Brazilian karyotype by two centric fusions, an acquisition of chromosome material, and at least one pericentric inversion, and by the telocentric nature of both the X and the Y chromosomes. G-and C-banding suggest that the metacentric gonosomes in the Brazilian form resulted from a double autosomal-X-Y Robertsonian translocation. The Uruguayan cytotype is interpreted as derived from a hypothetical neo-X/Y₁Y₂ ancestral form by the secondary loss of the Y₁ chromosome. The karyotypic differences between the Brazilian-Uruguayan and the Argentinian forms afford evidence of species differentiation. It is proposed to assign the former to Reithrodon typicus, and the later to R. auritus.     

Cytological variation and evolution withinPelargonium sectionHoarea (Geraniaceae)

Chromosome numbers of 65 species of sect.Hoarea have been determined. These show three basic chromosome numbers, x = 11, 10 and 9. Only a few species are tetraploid. In five species both diploid and tetraploid cytotypes are reported. Several cases of deviations in chromosome numbers and cytological abnormalities were found, most of these being related to the presence of B chromosomes that occur in eight species. Evidence is presented to suggest that the basic chromosome numbers of x = 10 and x = 9 are derived from x = 11 by centric fusion. Although variation in basic chromosome number withinPelargonium has been the subject of detailed study, this is the first time that evidence has been found for a mechanism of change in basic number, that of centric fusion by Robertsonian translocation. For the species of sect.Hoarea with x = 9, where the evidence for Robertsonian translocation is greatest, this process has probably taken place quite recently. In contrast to results from other sections of the genusPelargonium, the three different basic numbers of sect.Hoarea do not contradict its delimitation as a natural taxon.     

Comparative cytogenetics of six Indo‐Pacific moray eels (Anguilliformes: Muraenidae) by chromosomal banding and fluorescence in situ hybridization

A comparative cytogenetic analysis, using both conventional staining techniques and fluorescence in situ hybridization, of six Indo‐Pacific moray eels from three different genera (Gymnothorax fimbriatus, Gymnothorax flavimarginatus, Gymnothorax javanicus, Gymnothorax undulatus, Echidna nebulosa and Gymnomuraena zebra), was carried out to investigate the chromosomal differentiation in the family Muraenidae. Four species displayed a diploid chromosome number 2n = 42, which is common among the Muraenidae. Two other species, G. javanicus and G. flavimarginatus, were characterized by different chromosome numbers (2n = 40 and 2n = 36). For most species, a large amount of constitutive heterochromatin was detected in the chromosomes, with species‐specific C‐banding patterns that enabled pairing of the homologous chromosomes. In all species, the major ribosomal genes were localized in the guanine‐cytosine‐rich region of one chromosome pair, but in different chromosomal locations. The (TTAGGG)_n telomeric sequences were mapped onto chromosomal ends in all muraenid species studied. The comparison of the results derived from this study with those available in the literature confirms a substantial conservation of the diploid chromosome number in the Muraenidae and supports the hypothesis that rearrangements have occurred that have diversified their karyotypes. Furthermore, the finding of two species with different diploid chromosome numbers suggests that additional chromosomal rearrangements, such as Robertsonian fusions, have occurred in the karyotype evolution of the Muraenidae.     

A new low chromosome number forOrnithogalum tenuifolium (Hyacinthaceae)

A new chromosome number (2n=4) forOrnithogalum tenuifolium Delaroche is reported. The new chromosome race is postulated to have originated by a Robertsonian translocation from a Southern African chromosome race with six chromosomes, and represents thus the final step in a series of decreasing basic number of the species.     

Fixation of metacentric chromosomes in eastern Europe populations of the common shrew <Emphasis Type="Italic">Sorex araneus</Emphasis> L.

In this review, we discuss the processes of fixation of Robertsonian chromosome fusions in populations of the common shrew Sorex araneus L. Various Robertsonian fusions, accumulating in populations, create an illusion of large chromosomal rearrangements, reciprocal translocations of complete chromosome arms. The use of these rearrangements for phylogenetic reconstructions results in false conclusions. Robertsonian fusions accumulate in populations at such stages of the species evolution, when large open or subdivided populations prevail (populations of warm periods of Pleistocene and many present-day populations) and are fixed in small isolated populations and glacial refugia. The formation of monomorphic chromosome races requires a long time, several glaciation epochs during the whole Pleistocene.     

Chromosomal evolution inCallithrix emiliae

We studied the karyotype of specimens ofCallithrix emiliae (Callithricidae, Primates) from Rondonia, Brazil. Comparison with the karyotype ofCallithrix jacchus showed that, even though these two species show many karyotypic similarities, they differ by a Robertsonian translocation, a paracentric inversion and large-scale addition of heterochromatin. TheC. emiliae species appears to be in an active phase of chromosome evolution by the addition of constitutive heterochromatin.     

Genomic changes following the reversal of a Y chromosome to an autosome in Drosophila pseudoobscura

Robertsonian translocations resulting in fusions between sex chromosomes and autosomes shape karyotype evolution by creating new sex chromosomes from autosomes. These translocations can also reverse sex chromosomes back into autosomes, which is especially intriguing given the dramatic differences between autosomes and sex chromosomes. To study the genomic events following a Y chromosome reversal, we investigated an autosome‐Y translocation in Drosophila pseudoobscura. The ancestral Y chromosome fused to a small autosome (the dot chromosome) approximately 10–15 Mya. We used single molecule real‐time sequencing reads to assemble the D. pseudoobscura dot chromosome, including this Y‐to‐dot translocation. We find that the intervening sequence between the ancestral Y and the rest of the dot chromosome is only ～78 Kb and is not repeat‐dense, suggesting that the centromere now falls outside, rather than between, the fused chromosomes. The Y‐to‐dot region is 100 times smaller than the D. melanogaster Y chromosome, owing to changes in repeat landscape. However, we do not find a consistent reduction in intron sizes across the Y‐to‐dot region. Instead, deletions in intergenic regions and possibly a small ancestral Y chromosome size may explain the compact size of the Y‐to‐dot translocation.     

Chromosome evolution in Australian Rattus — G-banding and hybrid meiosis

The karyotypes of seven species of Australian Rattus were studied by G-banding. When taken in conjunction with molecular data, it is shown that rate of chromosome evolution in the R. sordidus group (R. sordidus, R. villosissimus and R. colletti) has been remarkably rapid and directed entirely towards changes of the Robertsonian type. From data on hybrid fertility it is concluded that the presence of fusions with monobrachial homology contributes more to reduced fertility than fusions per se or genetic differences.     

The role of the Robertsonian rearrangements in the origin of the XX/XY1Y2 sex chromosome system and in the chromosomal differentiation in Harttia species (Siluriformes, Loricariidae)

Harttia is a genus of the subfamily Loricariinae that posses a broad chromosomal variation. In addition to interspecific karyotype diversity within this group, a multiple sex chromosome system, XX/XY₁Y₂, has been described for Harttia carvalhoi. Thus, this study aimed to determine the role of chromosomal rearrangements in karyotype differentiation in Harttia by classical and molecular cytogenetic procedures. The results show that Robertsonian rearrangements have a prominent role in the chromosomal diversification of the species analysed, which initially leads to hypothesize a diploid number reduction in Harttia torrenticola and H. carvalhoi. The metacentric chromosome 1, shared between H. torrenticola and H. carvalhoi, could have originated from centric fusions from the ancestral karyotype. A centric fission event associated with the first metacentric pair allowed for the origination of a multiple sex chromosome system XX/XY₁Y₂, specific to H. carvalhoi. This study highlights the relevance of Robertsonian rearrangements in karyotypic differentiation of the species studied and demonstrates that the occurrence of a centric fission, as opposed to a previously hypothesised chromosome fusion, is directly implicated in the origin of the sex chromosome system of H. carvalhoi.     

Karyotypes of three species of the family Cottidae (Scorpaeniformes)

Karyotypes and cellular DNA contents of three species of the family Cottidae viz.Icelus cataphractus, Gymnocanthus intermedius andAlcichthys alcicornis were analyzed. Structural modifications within the family were supposedly by Robertsonian translocations. The diploid chromosome numbers were determined to be 48 inAlcichthys alcicornis, 44 inGymnocanthus intermedius and 40 inIcelus cataphractus. The DNA contents ranged from 1.46 to 1.50pg/cell in the three species. The karyotype ofIcelus cataphractus is unique in having the smallest chromosome number (2n = 40) and 14 large-sized chromosomes. From the chromosome number and the existence of some large chromosome pairs, Robertsonian translocations seem to have occurred frequently inIcelus cataphractus andGymnocanthus intermedius.     

The role of hybridization in the karyotype evolution of deer (Cervidae; Artiodactyla; Mammalia)

Summary The karyotypes of 46 animals from a population ofCervus elaphus, Cervus nippon, and hybridsCervus elaphus xCervus nippon were studied using G- and C-banding techniques. It was found that four chromosome pairs known from the karyotype ofCervus elaphus are involved in two systems of Robertsonian translocations. Pedigree analysis supports the hypothesis of a simple Mendelian inheritance of each translocation system. With respect to these translocation systems, the population shows no significant deviation from the corresponding Hardy-Weinberg-structure. Thus, hybridization events can be accepted as a major factor in karyotype evolution of deer.     

Limited Introgression between Rock-Wallabies with Extensive Chromosomal Rearrangements

Chromosome rearrangements can result in the rapid evolution of hybrid incompatibilities. Robertsonian fusions, particularly those with monobrachial homology, can drive reproductive isolation amongst recently diverged taxa. The recent radiation of rock-wallabies (genus Petrogale) is an important model to explore the role of Robertsonian fusions in speciation. Here, we pursue that goal using an extensive sampling of populations and genomes of Petrogale from north-eastern Australia. In contrast to previous assessments using mitochondrial DNA or nuclear microsatellite loci, genomic data are able to separate the most closely related species and to resolve their divergence histories. Both phylogenetic and population genetic analyses indicate introgression between two species that differ by a single Robertsonian fusion. Based on the available data, there is also evidence for introgression between two species which share complex chromosomal rearrangements. However, the remaining results show no consistent signature of introgression amongst species pairs and where evident, indicate generally low introgression overall. X-linked loci have elevated divergence compared with autosomal loci indicating a potential role for genic evolution to produce reproductive isolation in concert with chromosome change. Our results highlight the value of genome scale data in evaluating the role of Robertsonian fusions and structural variation in divergence, speciation, and patterns of molecular evolution.     

Chromosome cytology and karyotype change inGalaxia (Iridaceae)

Basic chromosome number inGalaxia is believed to be x = 9, and this number, or multiples, occurs in all species of subgenusGalaxia. In subgenusEurystigma, G. barnardii has n = 8,G. versicolor n = 8 and 7,G. citrina n = 8, 7 and 17 whileG. variabilis has n = 7 exclusively. Karyotypes in forms ofG. versicolor with n = 7 and inG. variabilis are quite different and clearly originated independently. Karyotypic features provide evidence for the hypothesis that changes in chromosome number were accomplished through chromosome fusion either by classical Robertsonian translocation, or unequal reciprocal translocation.     

Chromosome evolution in the Gibasis linearis alliance (Commelinaceae)

Two related species of Gibasis, G. venustula (x = 6) and G. speciosa (x = 5) have been shown to be differentiated by a Robertsonian fusion. Meiotic analysis of the F₁ hybrids has revealed further chromosome differentiation of the parent species, involving several interchanges and inversions. These rearrangements tend to be concentrated in the Robertsonian group, and give rise to unusual meiotic configurations. The sets of the two species are nonetheless highly homologous as shown by high chiasma frequency and as much as 65% stainable pollen in the F₁. Models are proposed suggesting the possible evolutionary pathways of this karyotypic differentiation. The results are discussed in terms of chromosome evolution and its consequences for these species.     

On the karyotypes of the Neorhabdocoela species and karyological evolution of Turbellaria

The karyotypes of 10 species belonging to the Neorhabdocoela order (Turbellaria) are described: Proxenetes flabelliger, 2n=6 (Trigonostomidae), Promesostoma rostratum, 2n=12 (Promesostomatidae), Castrada sp., 2n=6, Rhynchomesostoma rostratum, 2n=6, Bothromesostoma esseni, 2n=10, Mesostoma lingua, 2n=8 (Typhloplanidae), Provortex karlingi, 2n=8 (Provorticidae), Halamovortex macropharynx, 2n=16 (Dalyellidae), Macrorhynchus crocea, 2n=16, and Gyratrix hermaphroditus, 2n=4 (Polycystidae). It is proposed that the karyotypes of the ancestral marine neorhabdocoel forms, as well as those of the other groups of turbellarians, must have consisted of 16–20 biarmed chromosomes. The processes of adaptation and speciation in each group seem to be accompanied by a gradual decrease in chromosome number to 2n=8–4, this being due to Robertsonian fusions and translocations. In some freshwater turbellarians the diploid number increased by polyploidisation. The same processes evidently took place in different groups of parasitic worms.     

Robertsonian polymorphism in plaice, Pleuronectes platessa L., and cod, Gadus morhua L., (Pisces Pleuronectiformes and Gadiformes)

Karyotypic analysis of plaice, Pleuronectes platessa L., and cod, Gadus morhua L., revealed that the chromosome numbers in both species vary but that chromosome arm numbers (NF) stay constant. The C-, Q- and R-banding patterns also confirmed that the population of plaice studied shows Robertsonian polymorphism. The tendency of reduction in chromosome number in fishes suggests that Robertsonian fusions play a role in karyotype evolution in fishes.     

Karyotype evolution in Tilapia: mitotic and meiotic chromosome analysis of Oreochromis karongae and O. niloticus x O. karongae hybrids

The karyotype of Oreochromis species is considered to be highly conserved, with a diploid chromosome complement of 2n = 44. Here we show, by analysis of mitotic and meiotic chromosomes, that the karyotype of O. karongae, one of the Lake Malawi chambo species, is 2n = 38. This difference in chromosome number does not prevent the production of inter-specific hybrids between O. niloticus (2n = 44) and O. karongae (2n = 38). Analysis of the meiotic chromosomes of the O. niloticus × O. karongae hybrids indicates that three separate chromosome fusion events have occurred in O. karongae. Comparison of the O. karongae and O. niloticus karyotypes suggests that these consist of one Robertsonian fusion and two fusions of a more complex nature.     

Chromosome translocations: study of 232 cases originating from 144 families

Between 1974 and 1987, 232 translocation carriers have been detected in our Center; they belong to 144 different families. Indications for chromosome analysis were the following: familial studies in relation with a patient suggesting a chromosome anomaly (25.4%); mental retardation with or without malformations (24.6%); 2 or more spontaneous abortions (17.2%); infertility problems, mainly male (16.4%); genetic counseling for a non-chromosomal disease (9.5%); prenatal diagnosis in risk pregnancies (6.9%). The chromosome anomalies detected were the following; balanced Robertsonian fusions (114 cases = 49.1%); balanced translocations (74 cases = 31.9%); unbalanced translocations, Robertsonian fusions included (44 cases = 19%). Two groups may be distinguished: the first one confirms data already known, such as high frequency of balanced translocations in couples with multiple abortions, or in infertile males. The second group on the contrary shows more unusual observations: 4 cases of standard trisomy 21 born to young parents carriers of a balanced translocation not involving chromosome 21; 5 cases of trisomy 13 with 46 chromosomes and a Robertsonian fusion, born to parents carriers of a t(13q; Dq) (twice the mother and thrice the father); 14 cases of apparently balanced translocations, however with an abnormal phenotype; and finally 22 cases of balanced translocations incidentally detected during the course of investigations in patients with a genetic problem generally not associated with a chromosome defect.