Environmental conditions and host genotype direct genetic diversity of Venturia ditricha,a fungal endophyte of birch trees

We investigated whether genetic variation of a common foliar endophyte of birch trees, Venturia ditricha, is affected by environmental conditions or host genotype. Fungal samples were collected from 10 half-sibling families of mountain birch (Betula pubescens ssp. czerepanovii) grown in two environmental conditions with different daily average temperatures: a forested river valley and an adjacent open tundra (altitudinal difference 180 m). Genetic analysis of V. ditricha isolates was done using random amplified microsatellite polymerase chain reaction. We found that host genotypes, along with prevailing environmental conditions, influence the probability of infection by particular endophyte genotypes. The most susceptible host genotypes were highly infected with genetically similar endophyte genotypes, whereas the most resistant trees were poorly infected and they were infected by genetically dissimilar endophytes. Our results also showed environment-host genotype interactions, suggesting that the susceptibility of the host to a particular endophyte genotype may change in natural environments when environmental conditions are changed. It appears that a particular endophyte genotype needs to find the right host genotype for a successful infection. There are many host genotypes in natural stands; this means, from the point of view of the fungus, the environment is heterogeneous. Thus, under the influence of birch tree genotypes, genetically differentiated subgroups of the endophytic fungus may be formed in different environments.     

Maize seed endophytes

Maize is a vital global crop, and each seed (kernel) hosts an ecosystem of microbes living inside it. However, we know very little about these endophytes and what their role is in plant production and physiology. In this Microreview, I summarize the major questions around maize seed endophytes, including what organisms are present, how they get there, whether and how they transmit across generations, and how they and the plant affect each other. Although several studies touch on each of these areas, ultimately there are far more questions than answers. Future priorities for research on maize seed endophytes should include understanding what adaptations allow microbes to be seed endophytes, how the host genetics and the environment affect these communities, and how maize seed endophytes ultimately contribute to the next generation of plants.     

Endophytic Bosea spartocytisi sp. nov. Coexists with rhizobia in root nodules of Spartocytisus supranubius growing in soils of Teide National Park (Canary Islands)

Two rod-shaped Gram negative strains, SSUT16^T and SSUT22, were isolated from root nodules of Spartocytisus supranubius in soils of the Teide National Park (Tenerife, Spain). The 16S rRNA gene sequences of these two novel strains classified them within genus Bosea with similarity values ranging from 97.65 % to 99.54 % with respect to the other species of this genus. The MLSA analysis from a concatenation of the two housekeeping- genes, recA and gyrB, showed that Bosea thiooxidans LMG 26210^T and B. robiniae LMG 26381^T are the two closest relative species with which they share similarity sequences values of 94.42 % and 94.27 %, respectively. The genome sequence analysis of strain SSUT16^T showed average nucleotide identity percentages (ANIb) and digital DNA-DNA hybridization (dDDH) below 84 % and 33 %, respectively, with the type strains of all sequenced species of genus Bosea. These values are much lower than the currently accepted cut-off values for these two parameters to delineate bacterial species, confirming that the novel strains constitute a novel Bosea species. In addition, they are also distinguished from the other closest species in their fatty acid composition and in other phenotypic characteristics. Genome sequence analysis showed the absence of the common nodulation and nitrogen fixation genes in the novel strains. Therefore, based on the results of phylogenetic, genomic, chemotaxonomic and phenotypic characterization, we propose a new species named Bosea spartocytisi sp. nov., with type strain SSUT16^T (=LMG 32510^T = CECT 30526^T = HAMBI 3759^T).     

庞泉沟自然保护区常见禾本科植物内生真菌分布及其影响因素

以庞泉沟自然保护区4种不同群落类型林地和灌丛下的优势禾草为研究对象,调查不同禾草内生真菌感染率,研究内生真菌感染的禾草种群与原生生境的土壤理化性质、土壤酶活性及土壤微生物群落结构的相互关系。结果发现,影响紫羊茅、中亚薹草和野燕麦染菌率的主要因子是土壤水分含量和碳氮比,且土壤C、N、S以及土壤水分含量与紫羊茅的内生真菌染菌率成正相关,土壤蔗糖酶、脲酶和酸性磷酸酶与紫羊茅的感染率显著正相关,但中亚薹草与紫羊茅的结果相反。丝盖伞科是华北落叶松林和油松林土壤微生物群落的优势真菌,但不同染菌植被群落类型下的优势细菌微生物群落组成不同。总体看来,4种森林群落类型下禾草内生真菌染菌率与土壤理化性质相关性不同,且受到的生态因子影响大小也有差异,内生真菌感染导致各植被群落类型的土壤微生物群落结构具有差异,其优势土壤真菌和土壤细菌组成不同,这有助于进一步认识原生生境下不同感染率的禾草种群对土壤微生物群落结构的影响及其在生态系统中的各异生态学功能。     

Impact of dark septate endophytes on tomato growth and nutrient uptake

ABSTRACT

Background

Dark septate endophytes (DSEs) represent a form-group of ascomycetous fungi that inhabit the roots of a wide range of plant species, but our knowledge on their interaction with the host plants is still limited.     

Botrytis species: relentless necrotrophic thugs or endophytes gone rogue?

Plant pathology has a long‐standing tradition of classifying microbes as pathogens, endophytes or saprophytes. Lifestyles of pathogens are categorized as biotrophic, necrotrophic or hemibiotrophic. Botrytis species are considered by many to be archetypal examples of necrotrophic fungi, with B. cinerea being the most extensively studied species because of its broad host range and economic impact. In this review, we discuss recent work which illustrates that B. cinerea is capable of colonizing plants internally, presumably as an endophyte, without causing any disease or stress symptoms. The extent of the facultative endophytic behaviour of B. cinerea and its relevance in the ecology and disease epidemiology may be vastly underestimated. Moreover, we discuss the recent discovery of a novel Botrytis species, B. deweyae, which normally grows as an endophyte in ornamental daylilies (Hemerocallis), but displays facultative pathogenic behaviour, and is increasingly causing economic damage. We propose that the emergence of endophytes ‘gone rogue’ as novel diseases may be related to increased inbreeding of hybrid lines and reduced genetic diversity. These observations lead us to argue that the sometimes inflexible classification of pathogenic microbes by their lifestyles requires serious reconsideration. There is much more variety to the interactions of Botrytis with its hosts than the eye (or the plant pathologist) can see, and this may be true for other microbes interacting with plants.     

植物内生放线菌研究进展

植物内生菌主要包括细菌、真菌和放线菌。放线菌的次生代谢产物,如抗生素、有机酸、生物碱等,在抗癌药物、新型抗生素、植物促生剂、生物农药、纳米新材料等领域取得了一系列研究成果。内生放线菌在生态农业、食品工业、制药工业和环境治理等方面扮演重要角色。本文简要概述了目前植物内生放线菌的研究成果,讨论了存在的问题和发展方向。     

MORE MOSSES WITH CHLOROCHYTRIUM1

The green alga Chlorochytrium is reported intracellular in the mosses Archidium tenerrimum Mitten (Archidiaceae) and Funaria hygrometrica Hedwig (Funariaceae).     

高寒草甸优势植物叶内、根内与土壤原核微生物群落的分异

植物内生菌具有帮助植物吸收营养元素,增强植物免疫力,抵御外界生物和非生物胁迫等功能。植物的根内和叶内存在大量的内生菌,影响着植物的健康生长。但不同植物地下(根内)和地上(叶内)内生原核微生物,以及与土壤微生物在组成和群落结构上的差异和联系还有待探索。以青藏高原高寒草甸三种优势植物青藏苔草(Carex moorcroftii)、火绒草(Leontopodium jacotianum)和高山嵩草(Carex parvula)为对象,研究了高寒草甸优势植物叶内、根内、土壤原核微生物组的组成及其与样品类型和植物类型之间的关系。结果表明:1)在门分类水平上,有13个门在土壤、叶内和根内之间有显著差异,只有5个门在不同植物之间有显著性差异,分别是变形菌门、厚壁菌门、酸杆菌门、疣微菌门以及FBP;2)在α多样性上,同种植物土壤、叶内、根内之间差异显著,而不同植物在土壤和根内差异显著,但在叶内无显著性差异;3)样品类型(叶内、根内以及土壤)是决定植物微生物组差异的最主要因子,对微生物群落变异的贡献度为20.13%;不同植物类型之间微生物群落也有显著性差异,植物类型对总变异的贡献率为14.41%,并且植...     

禾草内生真菌生物碱的研究进展

综述了国内外近20a以来在禾草内生真菌生物碱方面的研究进展。目前,已发现至少4大类10余种生物碱与内生真菌有关。各类生物碱中典型代表物的分子结构已完全清楚,部分内生真菌在离体条件下可产生除黑麦草碱外的生物碱,但产碱量较其在植物体中所产生的低很多,可相差150余倍之多。随着生物技术的发展,美国、新西兰等国在波胺、麦角碱和loline的生物合成途径方面已有了初步的进展,对个别具有重要功能基因以及其所编码的酶已有了深入研究。各种生物碱的致毒机理尚未完全清楚,除饱和吡咯化合物为新陈代谢类毒素和神经性毒素外,其余3类生物碱均为神经性毒素。生物碱可增加禾草对40余种害虫的抗性,并可增加对某些线虫和病害的抗性。诸多因素均可影响寄主植株中生物碱的种类和浓度,包括寄主植株：种群和生态型,植物品种和基因型,植株的部位和生长期;环境：气候因素,土壤养分,季节和年度变化;内生真菌菌株和草地管理利用方式等。用于生物碱检测的主要方法为预分离检测法和直接检测法,其中高效液相色谱法以其分离能力强、选择性高、测定灵敏度高,操作简单,可在室温下进行,应用范围极广的优点而广泛应用。目前,国际关于禾草内生真菌生物碱研究的重点包括创造不含对家畜有毒素的有益禾草-内生真菌共生体,开展基因工程研究以及合理利用生物碱,使其成为新一代的“生物农药”。     

Comparison of the chemistry and diversity of endophytes isolated from wild-harvested and greenhouse-cultivated yerba mansa (Anemopsis californica)

With this study, we explored the identity and chemistry of fungal endophytes from the roots of yerba mansa [Anemopsis californica (Nutt.) Hook. & Arn. (Saururaceae)], a botanical traditionally used to treat infection. We compared the diversity of fungal endophytes isolated from a wild-harvested A. californica population, and those from plants cultivated for one year in a greenhouse environment. The wild-harvested population yielded thirteen fungal strains (eleven unique genotypes). Of the extracts prepared from these fungi, four inhibited growth of Staphylococcus aureus by >25% at 20 μg/mL, and three inhibited growth of Pseudomonas aeruginosa by ≥20% at 200 μg/mL. By comparison, A. californica roots after one year of cultivation in the greenhouse produced only two unique genotypes, neither of which displayed significant antimicrobial activity. The fungus Chaetomium cupreum isolated from wild-harvested A. californica yielded a new antimicrobial spirolactone, chaetocuprum (1). An additional 14 known compounds were identified using LC–MS dereplication of the various fungal endophytes. This study provides new insights into the identity and chemistry of A. californica fungal endophytes, and demonstrates the importance of considering growing conditions when pursuing natural product drug discovery from endophytic fungi.     

红树植物内生真菌Penicillium sp.的化学成分

应用各种层析手段,从红树植物内生真菌GT26158菌丝体的甲醇提取物中分离纯化了7个含氮化合物,结合多种波谱方法(ESI-MS,1D-NMR,2D-NMR),它们被鉴定为2′-deoxyuridine(1)、thymidine(2)、2′-deoxyad-enosine(3)、cyclo(tyrosyl-phenylalanyl,4)、serine(5),cyclo(seryl-tryptophyl,6)、alanine(7)。     

Fungal endophyte diversity from tropical forage grass Brachiaria

ABSTRACT

Background

Microbial endophytes can be beneficial to host plants, improving resistance against biotic and abiotic stress. While beneficial fungal endophytes have been well characterised in temperate grasses, knowledge about fungal endophytes of tropical grasses is limited.     

Colonisation pattern of nonpathogenic Fusarium oxysporum, a potential biological control agent, in roots and rhizomes of tissue cultured Musa plantlets

Under laboratory conditions, nonpathogenic, endophytic Fusarium oxysporum inflicts high mortality among banana weevils and nematodes. Following inoculation into banana (Musa spp.) tissue cultured plants, successful colonisation is necessary for efficient biological control of these pests. The pattern of root and rhizome colonisation by two nonpathogenic Ugandan F. oxysporum strains (V2w2 and III4w1) in cv. Nabusa (AAA‐EA) was investigated using light microscopy. Percentage of colonisation in the rhizomes (93%) was higher than in the roots (56%), but hyphal density in the roots (0.30 mm^?2) was higher than in the rhizomes (0.21 mm^?2). The root bases were better colonised (76%) than root midsections (53%) or tips (39%). Both the strains colonised the roots and the rhizomes, with numerous hyphae infecting the hypodermis but fewer infecting the cortex. Colonisation of vascular tissues was not recorded. Despite the presence of hyphae in intercellular and intracellular spaces of the roots and the rhizomes, normal cell structure was observed. Our report provides the first in situ observation and quantification of endophyte colonisation in banana. The study demonstrated the ability of F. oxysporum strains V2w2 and III4w1 to penetrate intact host tissues and recolonise the host internally upon inoculation, an important step for their suitability as biological control agents.     

Fungal endorhizal associates of Equisetum species from Western and Arctic Canada

We describe endorhizal fungi associated with Equisetum species collected from Ellesmere Island (82°N), Axel Heiberg Island (80°N), and from sites in Yukon Territory and the Prairie Provinces (51–67°N). Fungal colonization was assessed using a multiple quantitation microintersect method for lactofuchsin-stained roots examined with wide-field and confocal epifluorescence microscopy. Equisetum roots host abundant and diverse endorhizal fungal associates. For 85 specimens from 14 sites, total colonization averaged 30 ± 3%, range 0–97%. Colonization rates for wide aseptate hyphae characteristic of arbuscular mycorrhizae (5 ± 1%) was significantly less than for fine endophytes (20 ± 3%) or septate endophytes (17 ± 2%). Equisetum spp. are abundant in tundra and an important understory plant in boreal forests, where they are particularly common on burned or disturbed sites. Endorhizal fungi associated with Equisetum may have broad ecological relevance.     

Apiosordaria striatispora, an endophyte ofMesua ferrea andPrunus arborea from Thailand

Apiosordaria striatispora isolated as an endophyte ofMesua ferrea andPrunus arborea is described, and illustrated with interference contrast light micrographs and scanning electron micrographs.     

植物内生菌研究进展

内生菌由于生长于植物体内且不引起植物病害所以不易被发现,它是一类具有高实用价值的植物内生微生物。经过人们的不断研究,越来越多的植物内生菌被发现,其活性代谢产物的优势也得到了更多研究者的认可。综述了国内外有关植物内生菌研究的主要成果和进展,并从植物内生菌的发现、研究历史、多样性、生理生化特性以及植物内生菌与宿主植物间的作用关系等多个层次进行了概述,以期为植物内生菌相关研究提供参考。     

植物内生菌研究进展及其存在的问题

植物内生菌是一个多样性十分丰富的微生物类群 ,分布于没有外在感染症状的健康植物组织内 ,并与宿主植物协同进化 ,其存在和作用长期以来一直为人们所忽视。随着研究领域的不断拓宽和研究方法的不断深入 ,植物内生菌的生态和生理作用及其作为潜在的生防资源和外源基因载体 ,在农业和医药领域中的巨大应用潜力 ,已逐渐成为国内外研究的热点。本文综述了近 10年来国内外植物内生菌研究的概况和最新进展 ,并对该研究领域中存在的若干问题进行了探讨。     

植物内生菌的研究进展

植物内生菌是存在于植物内部与植物密不可分的一类微生物,包括内生真菌和内生细菌两大类。随着研究的不断深入,发现内生菌不仅产生多种有益的生物学作用,如防病、促生、固氮等,还能对寄主植物的生长发育产生不利影响。近年来,植物内生菌已成为我国微生物学领域研究的热点问题之一。本文综述了植物内生真菌和内生细菌的研究概况,以期更好地研究和了解植物内生菌。     

不同耕作方式结合秸秆还田对玉米内生细菌多样性的影响

【目的】研究土默川平原不同耕作方式与秸秆还田模式下玉米内生细菌群落组成及功能,揭示不同耕作与秸秆还田方式促进玉米秸秆降解的内生菌资源,并为其选择性分离培养及其功能验证奠定基础。【方法】以内蒙古自治区土默川平原灌区连作玉米茎秆为研究对象,利用Illumina Miseq高通量测序技术,分析不同耕作及其秸秆还田方式连年定位试验条件下,玉米成熟期内生微生物多样性及群落结构差异。【结果】综合分析表明,免耕及深翻对玉米内生细菌群落多样性影响显著。不同耕作方式对玉米内生细菌群落组成结构的影响大于秸秆还田,玉米内生细菌群落结构首先可分为2类,第一类是免耕及其秸秆还田,第二类是其他7种耕作方式。从属水平来看,9种耕作方式共有的优势菌群分别为假单胞菌属(Pseudomonas)、肠杆菌科未分类属(unclassified_f__ Enterobacteriaceae)、泛菌属(Pantoea)、拉乌尔菌属(Raoultella)、拉恩氏菌属(Rahnella1),秸秆还田可增加拉乌尔菌属及肠杆菌科未分类属的丰度。【结论】不同耕作方式改变了玉米内生细菌多样性、群落组成和结构;秸秆还田处理能够增加玉米茎秆中对秸秆降解有积极作用的拉乌尔菌属及乳球菌属(Lactococcus)的相对丰度。