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1.
Divergence during the early stage of speciation can be driven by a population bottleneck via reduced gene flow and enhanced lineage sorting. In this study, we aimed to examine whether such bottlenecks occurred during the initial speciation of two closely related spruce species Picea asperata and P. crassifolia occurring on the Qinghai–Tibet Plateau (QTP). We analyzed sequences of three chloroplast, two mitochondrial DNA fragments and a further 13 nuclear loci from 216 individuals of the two species. Both species showed a low level of genetic diversity in contrast to other congeners occurring in the QTP and adjacent regions. The estimated population sizes of P. asperata and P. crassifolia are less than the ancestral population size before splitting. These results together with multiple statistical tests (Tajima's D, Fu and Li's D* and F*) suggest that these two species underwent recent bottlenecks. Based on approximate Bayesian computation (ABC), we also determined that the period of the population shrinkage was consistent with the interspecific divergence during the late Pleistocene. The reduced population sizes and the divergent selection may together have triggered the initial divergence under high gene flow between these two species. Our results therefore highlight the importance of climatic oscillations during the late Pleistocene in promoting speciation through changing demographic sizes of the ancestral species on the QTP and in adjacent regions. 相似文献
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Sabine Matuszak Alexandra N. Muellner‐Riehl Hang Sun Adrien Favre 《Journal of Biogeography》2016,43(3):580-590
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Xinyu Wang Yuanshuo Li Qianlong Liang Lei Zhang Qian Wang Huan Hu Yongshuai Sun 《Ecology and evolution》2015,5(7):1513-1524
It has been hypothesized that species occurring in the eastern and the western Qinghai–Tibet Plateau (QTP) responded differently to climate changes during the Pleistocene. Here, we test this hypothesis by phylogeographic analysis of two sister species, Allium cyathophorum and A. spicata. We sequenced two chloroplast DNA (cpDNA) fragments (accD‐psaI and the rpl16 intron) of 150 individuals, and the nuclear (ITS) region of 114 individuals, from 19 populations throughout the distributional ranges of these species. The divergence between the two species was dated at 779 ‐ 714 thousand years before the present and was likely initiated by the most major glaciation in the QTP. Analysis of chlorotype diversity showed that A. spicata, the species occurring in the western QTP, contains much lower genetic diversity (0.25) than A. cyathophorum (0.93), which is distributed in the eastern QTP. Moreover, multiple independent tests suggested that the A. spicata population had expanded recently, while no such expansion was detected in A. cyathophorum, indicating a contrasting pattern of responses to Pleistocene climate changes. These findings highlight the importance of geographical topography in determining how species responded to the climate changes that took place in the QTP during the Pleistocene. 相似文献
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Hasbagan Ganjurjav Guozheng Hu Yunfan Wan Yue Li Luobu Danjiu Qingzhu Gao 《Ecology and evolution》2018,8(3):1507-1520
Climate is a driver of terrestrial ecosystem carbon exchange, which is an important product of ecosystem function. The Qinghai–Tibetan Plateau has recently been subjected to a marked increase in temperature as a consequence of global warming. To explore the effects of warming on carbon exchange in grassland ecosystems, we conducted a whole‐year warming experiment between 2012 and 2014 using open‐top chambers placed in an alpine meadow, an alpine steppe, and a cultivated grassland on the central Qinghai–Tibetan Plateau. We measured the gross primary productivity, net ecosystem CO2 exchange (NEE), ecosystem respiration, and soil respiration using a chamber‐based method during the growing season. The results show that after 3 years of warming, there was significant stimulation of carbon assimilation and emission in the alpine meadow, but both these processes declined in the alpine steppe and the cultivated grassland. Under warming conditions, the soil water content was more important in stimulating ecosystem carbon exchange in the meadow and cultivated grassland than was soil temperature. In the steppe, the soil temperature was negatively correlated with ecosystem carbon exchange. We found that the ambient soil water content was significantly correlated with the magnitude of warming‐induced change in NEE. Under high soil moisture condition, warming has a significant positive effect on NEE, while it has a negative effect under low soil moisture condition. Our results highlight that the NEE in steppe and cultivated grassland have negative responses to warming; after reclamation, the natural meadow would subject to loose more C in warmer condition. Therefore, under future warmer condition, the overextension of cultivated grassland should be avoided and scientific planning of cultivated grassland should be achieved. 相似文献
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Genetic variation of 10 Rhodiola alsia (Crassulaceae) populations from the Qinghai–Tibet Plateau of China was investigated using intersimple sequence repeat (ISSR) markers. R. alsia is an endemic species of the Qinghai–Tibet Plateau. Of the 100 primers screened, 13 were highly polymorphic. Using these primers, 140 discernible DNA fragments were generated with 112 (80%) being polymorphic, indicating pronounced genetic variation at the species level. Also there were high levels of polymorphism at the population level with the percentage of polymorphic bands (PPB) ranging from 63.4 to 88.6%. Analysis of molecular variance (AMOVA) showed that the genetic variation was mainly found among populations (70.3%) and variance within populations was 29.7%. The main factors responsible for the high level of differentiation among populations are probably the isolation from other populations and clonal propagation of this species. Occasional sexual reproduction might occur in order to maintain high levels of variation within populations. Environmental conditions could also influence population genetic structure as they occur in severe habitats. The strong genetic differentiation among populations in our study indicates that the conservation of genetic variability in R. alsia requires maintenance of as many populations as possible. 相似文献
7.
He Tang Jia Liu Fei‐Xiang Wu Teresa Spicer Robert A. Spicer Wei‐Yu‐Dong Deng Cong‐Li Xu Fan Zhao Jian Huang Shu‐Feng Li Tao Su Zhe‐Kun Zhou 《植物分类学报：英文版》2019,57(6):670-677
The biodiversity history on the Qinghai–Tibetan Plateau (QTP) has remained unclear for a long time. Recent paleobotanical investigations provide opportunities for revealing the phytogeographic history on the QTP in deep time and for testing phylogeographic hypotheses. Lagokarpos is an extinct genus with unknown modern affinities. It is easily distinguished by its fruits, which have two long wings and an elliptical fruit body. Previously, Lagokarpos fossils have only been found from North America and Germany, ranging from the latest Paleogene to early middle Eocene. Recently, we found fossil fruits of this genus from the Niubao Formation, near Bangoin County in the central QTP. A new species, namely Lagokarpos tibetensis H. Tang, T. Su & Z. K. Zhou sp. nov., is described. This is the first fossil record of the genus in Asia. The occurrence of L. tibetensis indicates a close floristic linkage between the QTP and other floras in the Northern Hemisphere during the Paleogene. According to the floristic assemblages, we suggest the central QTP experienced a tropical or subtropical humid climate during that period. 相似文献
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Cong‐Li Xu Tao Su Jian Huang Yong‐Jiang Huang Shu‐Feng Li Yi‐Shan Zhao Zhe‐Kun Zhou 《植物分类学报：英文版》2019,57(2):169-179
The uplift of the Qinghai–Tibetan Plateau dramatically changed the regional topography and climate, profoundly impacting the distribution of many plant lineages. Plant responses to environmental changes are particularly prominent in lineages that require ecological factors differentiated from those present before the uplift of the QTP. Two fossil occurrences of Christella H. Lév., Fl. Kouy–Tchéou (Thelypteridaceae), a fern genus now distributed mainly at low elevations of the pantropics with warm and moist habitats, are described based on fossilized Cenozoic leaf fronds recovered from SW China: late Paleocene Christella nervosa (J. R. Tao) C. L. Xu, T. Su & Z. K. Zhou comb. nov. found in Liuqu, southern Tibet and middle Miocene Christella sp. recovered from the Jinggu Basin in western Yunnan. The frond fossils from both sites share key morphological characteristics that diagnose these fossils as Christella. After detailed comparisons, we further clarified Christella papilio (C. Hope) Holttum, a species distributed in warm, humid habitats at altitudes no more than 1300?m, as the nearest living relative of C. nervosa. This finding suggested that southern Tibet had not reached its present elevation during the late Paleocene (ca. 56 Ma). We propose that the uplift, accompanied by severe cooling and aridification after the late Paleocene, caused the disappearance of Christella in southern Tibet, whereas paleoenvironmental conditions enabled the genus to survive in Yunnan. Our study provides the first example of distributional constraints of ferns in SW China in response to paleoenvironmental changes in the Qinghai–Tibetan Plateau and nearby areas. 相似文献
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Arthur de Lima Silva Marccus Vinícius da Silva Alves Alessandra Ike Coan 《Feddes Repertorium》2019,130(1):65-77
Cyperaceae are a cosmopolitan Monocot family comprising about 5,700 species divided into two subfamilies: Cyperoideae and Mapanioideae. Within Mapanioideae, Mapania is the largest genus, with about 90 species. Anatomical studies on Mapanioideae are of great importance but still scarce. Here, the anatomy of roots, rhizomes and scapes of five Amazonian species of Mapania is studied. The species have two types of roots, which differ anatomically: thick roots, serving mainly for fixing, and thin ones, mainly for nutrient absorption. Rhizomes show a uniform anatomical pattern, with amyloplasts and phenolic idioblasts in the cortex and in the vascular cylinder, without aerenchyma. In this organ, the collateral vascular bundles are similar to those found in Hypolytrum, a genus closely related to Mapania within Mapanioideae, suggesting that this feature may be diagnostic for the tribe Hypolytreae. The scape anatomy of the species is taxonomically important at species level but does not corroborate precisely the infrageneric classification of the genus. Finally, the aerenchyma found in roots and scapes is an adaptive character state for a humid forest environment. This work contributes valuable information for the anatomical characterization of vegetative organs of Mapania and discusses its taxonomic and ecological relevance. 相似文献
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Shaolin Xu Yangliang Gu Juzhi Hou Yongqin Liu Henri J. Dumont Bo‐Ping Han 《Ecology and evolution》2018,8(10):5069-5078
Daphnia on the Tibetan Plateau has been little studied, and information on species diversity and biogeography is lacking. Here, we conducted a 4‐year survey using the barcoding fragment of the mitochondrial COI gene to determine the distribution and diversity of Daphnia species found across the Plateau. Our results show that species richness is higher than previously thought, with total described and provisional species number doubling from 5 to 10. Six of the taxonomic units recovered by DNA taxonomy agreed well with morphology, but DNA barcoding distinguished three clades each for the D. longispina (D. galeata, D. dentifera, and D. longispina) and D. pulex (D. pulex, D. cf. tenebrosa, and D. pulicaria) complexes. The sequence divergence between congeneric species varied within a large range, from 9.25% to 30.71%. The endemic D. tibetana was the most common and widespread species, occurring in 12 hyposaline to mesosaline lakes. The lineage of D. longispina is the first confirmed occurrence in west Tibet. 相似文献
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Exploring the community assembly has been important for explaining the maintenance mechanisms of biodiversity and species coexistence, in that it is a central issue in community ecology. Here, we examined patterns of the community phylogenetic structure of the subalpine meadow plant community along the slope gradient in the Qinghai–Tibetan Plateau of China. We surveyed all species and constructed the phylogenetic tree of the plant community based on data from the Angiosperm Phylogeny Group III. We selected the net relative index (NRI) and evaluated the community phylogenetic structure along the five slope plants communities. We found that the phylogenetic structure varied from phylogenetic clustering to phylogenetic overdispersion with the slope aspect from north to south. In the north slope, the community phylogenetically cluster indicated that the limiting similarity played a leading role in the community assembly and the maintenance of biodiversity. Community phylogenetic overdispersion in the east, southeast, and south slopes indicated that habitat filtration was the driving force for community assembly. The NRI index of the northeast slope was close to zero, implying random dispersion. But it may be driven by the neutral process or limiting similarity, in that the community assembly process was the result of a combination of several ecological factors and thus required further study. 相似文献
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Plant fossils from the Qinghai–Tibetan Plateau (QTP), China are critical to understand not only the diversification history of plants there, but also the paleoenvironmental conditions. Alnus are deciduous trees, mainly distributed in temperate and subtropical regions of Eurasia and North America, and they are well known in the fossil records throughout the Cenozoic in the Northern Hemisphere. We collected numerous well‐preserved Alnus leaf and infructescence fossils from the Lawula Formation (～34.6 Ma with 40Ar/39Ar dating) at the present elevation of 3910 m a.s.l. in the southeastern QTP. Based on detailed morphological comparisons with existing and fossil species, these fossils show closest affinity to Alnus ferdinandi‐coburgii C. K. Schneid., and we refer to these fossils as A. cf. ferdinandi‐coburgii. These specimens comprise the oldest megafossil record of Alnus in the QTP, and provide solid evidence for the distribution of Alnus there as early as the late Eocene. Extant A. ferdinandi‐coburgii is distributed in areas with mean annual temperature values between 9.7 °C and 16.9 °C, and mean annual precipitation values ranging from 896.2 mm to 1161.2 mm; therefore, fossils of A. cf. ferdinandi‐coburgii suggest a much warmer and wetter climate during the late Eocene than today in the southeastern QTP. This finding is consistent with other evidence for continued uplift of the southeastern QTP after the late Eocene that might be due to the eastward extension of the QTP. 相似文献
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The Himalaya–Hengduan Mountain region is one of the hotspots of biodiversity research. The uplift of the Qinghai–Tibetan Plateau (QTP) and the Quaternary glaciation caused great environmental changes in this region, and the responses of many species in the QTP to the Quaternary climate are still largely unknown. The genetic structure and phylogeographical history of Gentiana crassicaulis Duthie ex Burk, an endemic Chinese alpine species in this area, were investigated based on four chloroplast fragments and internal transcribed spacer region of the nuclear ribosomal DNA (nrITS) sequences of 11 populations. The populations with highly diverse chloroplast haplotypes were mainly found at the edge of the QTP. There were two main haplotypes of nrITS clones, one shared by the Yunnan and Guizhou populations, and the other by the remaining populations. The population with the highest diversity was the Gansu population, located at the edge of the plateau. Based on molecular dating, the diversification of G. crassicaulis at the edge of the plateau occurred before the Last Glacial Maximum (LGM), and the species may have completed its expansion from the edge to the platform. Ecological niche models were conducted to predict the distributional ranges of G. crassicaulis at present, during the LGM, and during the last interglacial (LIG) period. The results demonstrated that G. crassicaulis survived on the QTP platform and at the edge during the LGM but afterward retreated from the platform to the southern edge, followed by expansion to the platform. 相似文献
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《Insect Conservation and Diversity》2017,10(4):310-320
- Semi‐natural habitats in Europe host a substantial proportion of biodiversity, but they experience biodiversity loss due to ongoing agricultural changes. We regard the Rattle grasshopper (Psophus stridulus) as a charismatic species of species‐rich submontane xerothermic grasslands. To enable conservation of the species and its habitat, we studied the habitat preferences of this formerly abundant grasshopper, now threatened and declining in many European countries.
- In 2011, we applied capture‐mark‐recapture method to sample adults at four localities (Czech Republic), each divided into two subplots with different management and character of vegetation. In 2012, we carried out a more extensive study on habitat preferences, evaluating 179 grassland patches (24% of them occupied by P. stridulus). For each site, we recorded vegetation characteristics (sward height and density, cover of vegetation components, percentage of bare ground), slope, inclination and agricultural management. We used multistate models in MARK software to analyse survival and movement probabilities between different subplots. Data from the 2012 large‐scale study were analysed by fitting several regression models.
- The results show that the species preferred south‐facing slopes with sparse, short vegetation and with patches of bare ground. Sward density was the most important predictor of species presence.
- For species conservation, we recommend controlling succession on the localities by regular management (grazing or cautious mowing) to maintain optimal habitat with sparse sward. We promote P. stridulus as a flagship and umbrella species of species‐rich submontane xerothermic pastures.
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STEFAN SAFER KARIN TREMETSBERGER YAN‐PING GUO GUDRUN KOHL MARY R. SAMUEL TOD F. STUESSY HERMANN STUPPNER 《Botanical journal of the Linnean Society. Linnean Society of London》2011,165(4):364-377
The genus Leontopodium comprises 30–41 species. The centre of diversity is the Sino‐Himalayan region in south‐western China, where about 15 species occur. The two species native to Europe, L. alpinum (known as the common ‘Edelweiss’) and L. nivale, are part of the cultural heritage of the people living there. Despite its importance, very little is known about the systematics of the genus. Because recent molecular studies have shown that species within this genus are closely related and difficult to distinguish with rDNA and cpDNA data, we used AFLPs to obtain a more detailed understanding of the phylogeny of the genus. Our main aims were as follows: (1) to clarify species relationships within the genus; and (2) to reveal information about the biogeography of the genus. We used AFLPs with six primer combinations to investigate 216 individuals in 38 populations of 16 different species. With AFLPs, we were able to recognize 10 different groups, all of which had strong bootstrap support. These results were also congruent with the morphology‐based taxonomy of the genus. Most private and rare fragments were found in the Yunnan region (south‐western China) relative to Europe and Mongolia/central China, suggesting a long‐lasting in situ history of populations in the centre of diversity of the genus. Our results illustrate the utility of AFLPs to resolve phylogenetic relationships between these closely related species. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 165 , 364–377. 相似文献
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Sandra Stålhandske Martin Olofsson Karl Gotthard Johan Ehrlén Christer Wiklund Olof Leimar 《Biological journal of the Linnean Society. Linnean Society of London》2016,119(4):1060-1067
An insect species that shows variation in host species association across its geographical range may do so either because of local adaptation in host plant preference of the insect or through environmentally or genetically induced differences in the plants, causing variation in host plant suitability between regions. In the present study, we experimentally investigate the host plant preference of Anthocharis cardamines (orange tip butterfly) in two populations from the UK and two from Sweden. Previous reports indicate that A. cardamines larvae are found on different host plant species in different regions of the UK, and some variation has been reported in Sweden. Host plant choice trials showed that females prefer to oviposit on plants in an earlier phenological stage, as well as on larger plants. When controlling for plant phenological stage and size, the host species had no statistically significant effect on the choice of the females. Moreover, there were no differences in host plant species preference among the four butterfly populations. Based on our experiment, the oviposition choice by A. cardamines mainly depends on the phenological stage and the size of the host plant. This finding supports the idea that the geographical patterns of host–plant association of A. cardamines in the UK and Sweden are consequences of the phenology and availability of the local hosts, rather than regional genetic differences in the host species preference of the butterfly. 相似文献
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To identify mucosal immunity in HIV-infected chimpanzees, IgG, IgA, and IgM from plasma, saliva, rectal swabs, vaginal washes, semen, and urethral washes were tested from four male and three female HIV-1IIIB infected chimpanzees. The level of HIV infections in the seven chimpanzees were classified as high, intermediate and low depending on the number of HIV-1 infected cells per 107 peripheral blood mononuclear cells (PBMC). One male chimpanzee had a relatively high viral load, two males and two females had moderate viral loads and one male and one female had low levels of infection. All seven animals had plasma antibody. The principal finding was that nonclassical mucosal antibodies of the IgG isotype were the predominant antibody in the saliva, rectal swabs, vaginal washes, semen, and urethral washes of infected animals. All plasma and mucosal samples were negative for IgM antibodies. The results show that HIV-1 specific IgG responses and not sIgA predominate at mucosal surfaces of HIV-1IIIB infected chimpanzees. A trend was observed in which high viral loads correlated with high plasma IgG, IgA and sIgA titers. An overall correlation between relatively high virus loads and high amounts of mucosal IgG was also found. 相似文献